Wall clock time and date at job start Wed Apr 1 2020 04:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.00195 * 2 1 4 4 C 1.54330 * 109.78018 * 121.16635 * 2 1 3 5 5 C 1.55160 * 103.01973 * 97.49608 * 4 2 1 6 6 H 1.09001 * 111.00452 * 277.23516 * 5 4 2 7 7 N 1.46499 * 111.00626 * 153.38417 * 5 4 2 8 8 C 1.36929 * 120.00238 * 161.35153 * 7 5 4 9 9 H 1.07999 * 120.00396 * 359.97438 * 8 7 5 10 10 C 1.38816 * 120.00308 * 179.97438 * 8 7 5 11 11 N 1.31625 * 119.99520 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00167 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47124 * 90.00043 * 12 10 8 14 14 H 1.48511 * 109.46908 * 209.99878 * 12 10 8 15 15 H 1.48495 * 109.47150 * 329.99599 * 12 10 8 16 16 C 1.54905 * 101.58047 * 35.30519 * 5 4 2 17 17 N 1.47026 * 109.88160 * 238.90671 * 2 1 3 18 18 C 1.34778 * 125.64460 * 59.56027 * 17 2 1 19 19 O 1.21713 * 120.00554 * 0.71979 * 18 17 2 20 20 C 1.46549 * 119.99424 * 180.72095 * 18 17 2 21 21 C 1.37954 * 126.22678 * 351.80142 * 20 18 17 22 22 C 1.39787 * 107.12928 * 180.28581 * 21 20 18 23 23 Cl 1.73605 * 126.06190 * 179.72000 * 22 21 20 24 24 C 1.35719 * 107.87488 * 359.57436 * 22 21 20 25 25 Cl 1.73603 * 125.58409 * 180.16498 * 24 22 21 26 26 N 1.35657 * 108.82999 * 0.43335 * 24 22 21 27 27 C 1.46504 * 125.69382 * 179.70705 * 26 24 22 28 28 H 1.08992 * 109.47167 * 179.64045 * 1 2 3 29 29 H 1.09004 * 109.46750 * 299.64106 * 1 2 3 30 30 H 1.09004 * 109.47179 * 59.63701 * 1 2 3 31 31 H 1.08996 * 110.85278 * 339.03115 * 4 2 1 32 32 H 1.09004 * 110.66925 * 215.87724 * 4 2 1 33 33 H 0.97003 * 119.99880 * 341.34608 * 7 5 4 34 34 H 0.97004 * 119.99477 * 179.97438 * 11 10 8 35 35 H 1.09000 * 110.36877 * 204.15102 * 16 5 4 36 36 H 1.09001 * 110.36488 * 81.83388 * 16 5 4 37 37 H 1.08001 * 126.43315 * 0.03006 * 21 20 18 38 38 H 1.08995 * 109.47323 * 274.29694 * 27 26 24 39 39 H 1.09001 * 109.47233 * 34.29982 * 27 26 24 40 40 H 1.09009 * 109.46868 * 154.29734 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2426 5 6 2.3561 -2.1697 0.6913 6 1 1.4521 -2.7778 0.6577 7 7 3.3999 -2.8277 1.4811 8 6 3.5511 -4.1872 1.4188 9 1 2.9007 -4.7745 0.7877 10 6 4.5405 -4.8106 2.1668 11 7 5.3337 -4.0947 2.9355 12 14 4.7463 -6.6652 2.0823 13 1 5.6986 -7.0086 0.9958 14 1 5.2728 -7.1644 3.3781 15 1 3.4312 -7.2971 1.8060 16 6 2.8612 -1.8465 -0.7370 17 7 2.0300 -0.7140 -1.1840 18 6 1.7753 -0.3843 -2.4657 19 8 1.0871 0.5871 -2.7191 20 6 2.3270 -1.1955 -3.5544 21 6 3.2434 -2.2186 -3.4252 22 6 3.4952 -2.7104 -4.7092 23 17 4.5819 -4.0024 -5.1138 24 6 2.7369 -2.0010 -5.5831 25 17 2.6911 -2.2357 -7.3026 26 7 2.0251 -1.0747 -4.8936 27 6 1.0917 -0.1069 -5.4755 28 1 -0.3633 -1.0276 -0.0064 29 1 -0.3633 0.5083 0.8932 30 1 -0.3634 0.5195 -0.8867 31 1 1.2886 -0.7952 2.0191 32 1 2.9601 -0.2828 1.6225 33 1 3.9840 -2.3002 2.0482 34 1 6.0248 -4.5304 3.4585 35 1 2.7177 -2.7047 -1.3934 36 1 3.9123 -1.5589 -0.7116 37 1 3.6865 -2.5704 -2.5052 38 1 1.6406 0.7764 -5.8017 39 1 0.5873 -0.5574 -6.3303 40 1 0.3527 0.1801 -4.7273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988926195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:15:48 Heat of formation + Delta-G solvation = 16.110020 kcal Electronic energy + Delta-G solvation = -26012.600124 eV Core-core repulsion = 22108.373531 eV Total energy + Delta-G solvation = -3904.226593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.83024 -40.92553 -38.74277 -37.92960 -37.54033 -35.98081 -34.38299 -33.21504 -32.91012 -30.11548 -29.91606 -27.80619 -26.79185 -25.89403 -24.48240 -22.51411 -22.21552 -21.13316 -20.31731 -19.21844 -18.53617 -17.74414 -17.29997 -16.86765 -16.76093 -16.21369 -15.63930 -15.46471 -15.28145 -15.04148 -14.98735 -14.58744 -14.42138 -14.16995 -13.96546 -13.83377 -13.38012 -13.19376 -13.04764 -12.97655 -12.94127 -12.77519 -12.53556 -12.48302 -12.17899 -12.14927 -11.99478 -11.85913 -11.63522 -11.43246 -11.15730 -10.85589 -9.95516 -9.81184 -9.36606 -9.00370 -7.90637 -5.19721 0.02509 0.26012 0.97060 1.03160 1.53012 1.54582 1.56367 1.61801 2.06826 2.16824 2.60644 3.22696 3.41255 3.59187 3.77360 3.84382 3.87806 3.99920 4.13069 4.23136 4.30706 4.35778 4.43725 4.51300 4.54722 4.59662 4.74091 4.80031 4.93646 5.00857 5.05502 5.18482 5.28178 5.30822 5.39969 5.46858 5.57693 5.60298 6.30524 6.36612 6.93796 7.39396 8.10281 8.34175 9.32102 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.009678 B = 0.004029 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.392897 B = 6948.198136 C = 9533.345982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.143 3.857 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.168 3.832 6 H 0.064 0.936 7 N -0.721 5.721 8 C -0.240 4.240 9 H 0.079 0.921 10 C -0.064 4.064 11 N -0.965 5.965 12 Si 0.962 3.038 13 H -0.289 1.289 14 H -0.299 1.299 15 H -0.270 1.270 16 C 0.070 3.930 17 N -0.590 5.590 18 C 0.603 3.397 19 O -0.566 6.566 20 C -0.026 4.026 21 C -0.134 4.134 22 C -0.112 4.112 23 Cl -0.029 7.029 24 C 0.095 3.905 25 Cl 0.020 6.980 26 N -0.395 5.395 27 C 0.060 3.940 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.378 0.622 34 H 0.250 0.750 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.176 0.824 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 8.182 -17.300 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.099 0.901 4 C -0.164 4.164 5 C 0.057 3.943 6 H 0.082 0.918 7 N -0.360 5.360 8 C -0.371 4.371 9 H 0.097 0.903 10 C -0.257 4.257 11 N -0.615 5.615 12 Si 0.792 3.208 13 H -0.216 1.216 14 H -0.226 1.226 15 H -0.195 1.195 16 C -0.056 4.056 17 N -0.322 5.322 18 C 0.393 3.607 19 O -0.448 6.448 20 C -0.140 4.140 21 C -0.160 4.160 22 C -0.147 4.147 23 Cl 0.000 7.000 24 C -0.050 4.050 25 Cl 0.049 6.951 26 N -0.071 5.071 27 C -0.079 4.079 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.211 0.789 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.193 0.807 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.502 8.671 -17.840 21.994 hybrid contribution 0.935 -1.091 0.030 1.437 sum -8.567 7.580 -17.810 21.167 Atomic orbital electron populations 1.22084 0.93552 1.02348 1.03185 1.21645 0.95426 0.95912 0.82984 0.90121 1.22925 1.02392 0.94673 0.96382 1.21432 0.91365 0.92654 0.88853 0.91779 1.42419 1.37853 1.04179 1.51587 1.19580 1.12232 0.84598 1.20733 0.90296 1.25412 0.98891 1.01446 0.99987 1.69792 1.23058 1.35661 1.32974 0.85317 0.77963 0.81305 0.76261 1.21616 1.22632 1.19454 1.23730 0.94640 0.88079 0.99124 1.48198 1.49343 1.30524 1.04126 1.16367 0.80016 0.83244 0.81045 1.90745 1.41372 1.29133 1.83567 1.19858 1.06482 1.03814 0.83839 1.22119 0.99608 0.96421 0.97832 1.19747 1.02613 0.99139 0.93192 1.98348 1.61459 1.46591 1.93618 1.20672 1.00923 0.96930 0.86504 1.98405 1.97514 1.95513 1.03671 1.43876 1.32515 1.26034 1.04645 1.22615 0.92784 0.91364 1.01186 0.92708 0.89455 0.92492 0.88419 0.90536 0.78897 0.94075 0.89581 0.91424 0.80654 0.88579 0.87332 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.06 71.98 0.65 -2.84 16 2 C 0.14 3.65 3.50 45.34 0.16 3.81 16 3 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.13 -3.42 6.11 31.79 0.19 -3.23 16 5 C 0.17 5.73 3.69 46.38 0.17 5.90 16 6 H 0.06 2.24 8.13 -2.39 -0.02 2.22 16 7 N -0.72 -32.29 5.28 -316.38 -1.67 -33.96 16 8 C -0.24 -12.14 9.98 84.04 0.84 -11.30 16 9 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 10 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 11 N -0.96 -55.76 13.06 21.65 0.28 -55.47 16 12 Si 0.96 43.99 29.55 68.60 2.03 46.02 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 C 0.07 2.18 4.93 86.86 0.43 2.61 16 17 N -0.59 -16.88 3.08 -792.86 -2.44 -19.32 16 18 C 0.60 17.81 7.57 86.41 0.65 18.46 16 19 O -0.57 -17.75 13.62 -4.39 -0.06 -17.81 16 20 C -0.03 -0.71 6.84 40.31 0.28 -0.44 16 21 C -0.13 -3.79 9.15 22.58 0.21 -3.59 16 22 C -0.11 -3.01 6.66 22.06 0.15 -2.86 16 23 Cl -0.03 -0.74 29.12 -2.72 -0.08 -0.82 16 24 C 0.09 2.24 7.39 83.52 0.62 2.86 16 25 Cl 0.02 0.38 28.59 -2.72 -0.08 0.30 16 26 N -0.40 -9.40 3.17 -522.93 -1.66 -11.05 16 27 C 0.06 1.03 10.41 127.77 1.33 2.36 16 28 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.43 6.76 -2.38 -0.02 1.42 16 31 H 0.10 2.39 7.83 -2.39 -0.02 2.37 16 32 H 0.08 2.15 7.99 -2.38 -0.02 2.13 16 33 H 0.38 18.31 7.71 -92.71 -0.71 17.60 16 34 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 35 H 0.09 2.71 5.30 -2.39 -0.01 2.69 16 36 H 0.07 2.27 8.01 -2.39 -0.02 2.25 16 37 H 0.18 5.16 4.70 -2.91 -0.01 5.14 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.34 7.89 -2.39 -0.02 1.32 16 40 H 0.10 2.05 6.28 -2.38 -0.01 2.04 16 Total: -1.00 -60.23 356.89 2.85 -57.39 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.38 Total: 25.98 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.14 Total: 8.74 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -5.49 Total: -119.81 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.06 Total: -17.81 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.16 Total: -0.52 kcal Total: -60.23 2.85 -57.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988926195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.497 kcal (2) G-P(sol) polarization free energy of solvation -60.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds