Wall clock time and date at job start Wed Apr 1 2020 04:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.58682 * 2 1 4 4 C 1.53196 * 109.58868 * 239.71957 * 2 1 3 5 5 H 1.09002 * 109.49507 * 305.56304 * 4 2 1 6 6 N 1.46504 * 109.49529 * 65.62282 * 4 2 1 7 7 C 1.34780 * 120.00117 * 205.00060 * 6 4 2 8 8 O 1.21718 * 119.99831 * 0.02562 * 7 6 4 9 9 C 1.46536 * 120.00301 * 180.02562 * 7 6 4 10 10 C 1.37958 * 126.22488 * 180.31529 * 9 7 6 11 11 C 1.39793 * 107.13009 * 180.15485 * 10 9 7 12 12 Cl 1.73601 * 126.06594 * 179.83817 * 11 10 9 13 13 C 1.35724 * 107.87137 * 359.57656 * 11 10 9 14 14 Cl 1.73602 * 125.58150 * 180.26154 * 13 11 10 15 15 N 1.35662 * 108.83038 * 0.26263 * 13 11 10 16 16 H 0.97002 * 125.68750 * 179.97438 * 15 13 11 17 17 C 1.53034 * 109.31567 * 185.57967 * 4 2 1 18 18 C 1.53033 * 109.53982 * 61.36428 * 17 4 2 19 19 C 1.53195 * 109.31163 * 298.63404 * 18 17 4 20 20 N 1.46922 * 108.77576 * 54.63538 * 19 18 17 21 21 C 1.36936 * 120.63122 * 126.40771 * 20 19 18 22 22 H 1.08001 * 120.00142 * 221.18843 * 21 20 19 23 23 C 1.38811 * 119.99764 * 41.19317 * 21 20 19 24 24 N 1.31619 * 119.99950 * 214.87520 * 23 21 20 25 25 Si 1.86798 * 120.00190 * 34.87736 * 23 21 20 26 26 H 1.48497 * 109.47366 * 84.62365 * 25 23 21 27 27 H 1.48503 * 109.47288 * 204.62832 * 25 23 21 28 28 H 1.48499 * 109.47004 * 324.62459 * 25 23 21 29 29 H 1.09001 * 109.47060 * 180.28235 * 1 2 3 30 30 H 1.08999 * 109.46742 * 300.28214 * 1 2 3 31 31 H 1.09005 * 109.46768 * 60.28104 * 1 2 3 32 32 H 0.96998 * 120.00185 * 25.00831 * 6 4 2 33 33 H 1.08005 * 126.43445 * 0.03218 * 10 9 7 34 34 H 1.08997 * 109.45995 * 181.38859 * 17 4 2 35 35 H 1.09000 * 109.45690 * 301.34060 * 17 4 2 36 36 H 1.09003 * 109.50137 * 178.68652 * 18 17 4 37 37 H 1.09003 * 109.52639 * 58.60174 * 18 17 4 38 38 H 1.08991 * 109.58671 * 294.84745 * 19 18 17 39 39 H 1.09001 * 109.58713 * 174.42099 * 19 18 17 40 40 H 0.97006 * 120.00251 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7278 -1.2464 5 1 1.6025 -1.7234 -1.2939 6 7 1.6705 0.0299 -2.4435 7 6 1.5471 -0.6001 -3.6286 8 8 1.7453 -1.7987 -3.7041 9 6 1.1745 0.1578 -4.8261 10 6 1.0071 -0.3547 -6.0959 11 6 0.6583 0.7130 -6.9282 12 17 0.3368 0.6184 -8.6315 13 6 0.6098 1.8357 -6.1671 14 17 0.2136 3.4266 -6.7378 15 7 0.9217 1.5110 -4.8873 16 1 0.9606 2.1285 -4.1403 17 6 3.5675 -0.8465 -1.1713 18 6 3.9569 -1.6658 0.0612 19 6 3.4651 -0.9487 1.3224 20 7 2.0226 -0.7011 1.1935 21 6 1.1538 -1.1155 2.1675 22 1 0.2057 -1.5547 1.8941 23 6 1.4916 -0.9712 3.5061 24 7 1.1106 -1.8764 4.3823 25 14 2.4869 0.5079 4.0640 26 1 1.5752 1.6540 4.3093 27 1 3.2103 0.1736 5.3171 28 1 3.4666 0.8717 3.0089 29 1 -0.3633 -1.0277 0.0051 30 1 -0.3633 0.5182 0.8875 31 1 -0.3633 0.5095 -0.8926 32 1 1.5123 0.9850 -2.3833 33 1 1.1254 -1.3866 -6.3920 34 1 3.9377 -1.3421 -2.0687 35 1 4.0061 0.1488 -1.0992 36 1 5.0412 -1.7698 0.1013 37 1 3.4987 -2.6531 0.0020 38 1 3.9903 0.0001 1.4316 39 1 3.6518 -1.5746 2.1950 40 1 1.3470 -1.7758 5.3177 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993642043.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:13 Heat of formation + Delta-G solvation = -2.409778 kcal Electronic energy + Delta-G solvation = -25690.659345 eV Core-core repulsion = 21785.629673 eV Total energy + Delta-G solvation = -3905.029671 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.66567 -40.83281 -39.21474 -37.90418 -37.51490 -36.00553 -34.47265 -33.51971 -32.41701 -31.79126 -30.10049 -27.92019 -26.70990 -24.90715 -23.25987 -22.37362 -21.96059 -21.54670 -21.35079 -20.13686 -18.36785 -17.50807 -17.43382 -16.71656 -16.57308 -16.13519 -15.88427 -15.68110 -15.47773 -15.20039 -14.92053 -14.76467 -14.68231 -14.43460 -14.35923 -13.74431 -13.41028 -13.00789 -12.99715 -12.88352 -12.72924 -12.64413 -12.48746 -12.39084 -12.05351 -11.98333 -11.86280 -11.77923 -11.55454 -11.38240 -11.18082 -10.49966 -10.23028 -10.12155 -9.39034 -8.65365 -8.23662 -5.51711 0.02806 0.31888 1.02715 1.05829 1.40691 1.47693 1.55457 1.84941 2.13567 2.19917 2.49512 2.96297 3.41313 3.64668 3.72523 3.86132 3.97026 4.13776 4.22016 4.29533 4.43279 4.46725 4.56304 4.72464 4.76083 4.89656 4.99177 5.00576 5.08640 5.10893 5.16359 5.22442 5.27493 5.36029 5.47241 5.59314 5.88218 5.95146 6.28321 6.41510 7.00039 7.05808 7.66404 8.15091 8.96024 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.002482 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.799620 B =11279.737591 C =11814.690860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.161 3.839 3 H 0.055 0.945 4 C 0.145 3.855 5 H 0.060 0.940 6 N -0.702 5.702 7 C 0.593 3.407 8 O -0.559 6.559 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.111 4.111 12 Cl -0.026 7.026 13 C 0.107 3.893 14 Cl 0.019 6.981 15 N -0.505 5.505 16 H 0.442 0.558 17 C -0.111 4.111 18 C -0.127 4.127 19 C 0.137 3.863 20 N -0.603 5.603 21 C -0.262 4.262 22 H 0.041 0.959 23 C -0.001 4.001 24 N -0.929 5.929 25 Si 0.908 3.092 26 H -0.291 1.291 27 H -0.306 1.306 28 H -0.236 1.236 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.410 0.590 33 H 0.166 0.834 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.042 0.958 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.738 12.660 -23.935 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 H 0.073 0.927 4 C 0.039 3.961 5 H 0.078 0.922 6 N -0.352 5.352 7 C 0.380 3.620 8 O -0.438 6.438 9 C -0.132 4.132 10 C -0.120 4.120 11 C -0.146 4.146 12 Cl 0.003 6.997 13 C -0.038 4.038 14 Cl 0.048 6.952 15 N -0.107 5.107 16 H 0.285 0.715 17 C -0.150 4.150 18 C -0.166 4.166 19 C 0.012 3.988 20 N -0.328 5.328 21 C -0.391 4.391 22 H 0.059 0.941 23 C -0.200 4.200 24 N -0.571 5.571 25 Si 0.734 3.266 26 H -0.219 1.219 27 H -0.233 1.233 28 H -0.160 1.160 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.184 0.816 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.817 11.969 -23.817 26.717 hybrid contribution -0.027 1.048 1.166 1.568 sum 1.789 13.018 -22.651 26.186 Atomic orbital electron populations 1.21718 0.94761 1.00854 1.01225 1.20875 0.94176 0.94120 0.85314 0.92702 1.21383 0.95472 0.95622 0.83607 0.92195 1.45723 1.69788 1.12510 1.07211 1.16971 0.76823 0.86232 0.81958 1.90888 1.52219 1.15272 1.85374 1.20077 1.14943 0.82537 0.95603 1.21265 1.01536 0.99781 0.89461 1.19666 1.14459 0.92833 0.87658 1.98354 1.94346 1.98343 1.08671 1.20637 1.08880 0.88982 0.85350 1.98448 1.91903 1.18431 1.86412 1.41789 1.52335 1.08127 1.08462 0.71491 1.21716 0.94633 1.00987 0.97661 1.21927 1.00961 0.98742 0.95012 1.21396 0.83761 0.97235 0.96397 1.44370 1.02771 1.66151 1.19530 1.18399 1.01592 1.33923 0.85218 0.94094 1.26091 0.98934 0.98900 0.96072 1.70187 1.50107 1.33140 1.03630 0.86343 0.79583 0.82855 0.77775 1.21852 1.23311 1.15971 0.94966 0.93239 0.90515 0.75403 0.81648 0.92155 0.90384 0.89854 0.93735 0.94295 0.93953 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.96 71.98 0.57 -3.67 16 2 C 0.16 5.38 3.03 44.98 0.14 5.52 16 3 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 4 C 0.15 4.33 2.00 45.07 0.09 4.42 16 5 H 0.06 2.25 7.58 -2.39 -0.02 2.24 16 6 N -0.70 -15.17 4.57 -446.24 -2.04 -17.21 16 7 C 0.59 14.64 7.75 86.41 0.67 15.31 16 8 O -0.56 -18.83 16.54 -4.41 -0.07 -18.91 16 9 C -0.02 -0.33 7.06 40.30 0.28 -0.04 16 10 C -0.09 -1.85 10.64 22.58 0.24 -1.61 16 11 C -0.11 -1.97 6.66 22.06 0.15 -1.82 16 12 Cl -0.03 -0.43 29.12 -2.72 -0.08 -0.51 16 13 C 0.11 1.58 7.75 83.52 0.65 2.23 16 14 Cl 0.02 0.24 29.13 -2.72 -0.08 0.16 16 15 N -0.50 -6.48 6.00 -174.52 -1.05 -7.53 16 16 H 0.44 2.90 8.19 -92.71 -0.76 2.14 16 17 C -0.11 -3.13 5.46 30.62 0.17 -2.97 16 18 C -0.13 -4.12 6.08 30.67 0.19 -3.93 16 19 C 0.14 5.38 4.59 86.36 0.40 5.77 16 20 N -0.60 -26.03 2.47 -675.24 -1.67 -27.69 16 21 C -0.26 -13.90 8.43 84.03 0.71 -13.19 16 22 H 0.04 2.43 6.81 -2.91 -0.02 2.41 16 23 C 0.00 -0.05 4.82 84.86 0.41 0.36 16 24 N -0.93 -55.93 13.97 21.65 0.30 -55.63 16 25 Si 0.91 42.35 27.40 68.60 1.88 44.23 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.31 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.24 -9.93 5.24 99.48 0.52 -9.41 16 29 H 0.03 1.23 7.38 -2.39 -0.02 1.21 16 30 H 0.05 1.81 7.71 -2.39 -0.02 1.79 16 31 H 0.08 1.87 7.78 -2.38 -0.02 1.86 16 32 H 0.41 5.76 7.73 -92.71 -0.72 5.04 16 33 H 0.17 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.04 1.44 6.71 -2.39 -0.02 1.42 16 39 H 0.04 1.88 7.02 -2.39 -0.02 1.86 16 40 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -67.80 354.87 1.30 -66.51 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -0.56 Total: 10.21 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.66 Total: 6.38 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.45 Total: -108.06 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.07 Total: -18.91 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.16 Total: -0.35 kcal Total: -67.80 1.30 -66.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993642043.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.096 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds