Wall clock time and date at job start Wed Apr 1 2020 04:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.70161 * 2 1 4 4 C 1.53187 * 109.58854 * 120.35960 * 2 1 3 5 5 H 1.08998 * 109.49926 * 54.43480 * 4 2 1 6 6 N 1.46503 * 109.49491 * 294.37006 * 4 2 1 7 7 C 1.34785 * 119.99724 * 155.06235 * 6 4 2 8 8 O 1.21710 * 120.00058 * 0.02562 * 7 6 4 9 9 C 1.46538 * 119.99615 * 180.02562 * 7 6 4 10 10 C 1.37961 * 126.22158 * 180.02562 * 9 7 6 11 11 C 1.39790 * 107.13044 * 179.97438 * 10 9 7 12 12 Cl 1.73599 * 126.06336 * 179.97438 * 11 10 9 13 13 C 1.35720 * 107.87683 * 0.22722 * 11 10 9 14 14 Cl 1.73600 * 125.58795 * 179.74830 * 13 11 10 15 15 N 1.35665 * 108.83030 * 359.62605 * 13 11 10 16 16 H 0.96998 * 125.70032 * 180.10596 * 15 13 11 17 17 C 1.53040 * 109.33935 * 174.40946 * 4 2 1 18 18 C 1.53042 * 109.53641 * 298.68089 * 17 4 2 19 19 C 1.53194 * 109.34064 * 61.31699 * 18 17 4 20 20 N 1.46926 * 108.77190 * 305.38106 * 19 18 17 21 21 C 1.36937 * 120.62789 * 233.62062 * 20 19 18 22 22 H 1.08006 * 119.99859 * 150.14522 * 21 20 19 23 23 C 1.38812 * 120.00678 * 330.15985 * 21 20 19 24 24 N 1.31620 * 119.99598 * 344.48527 * 23 21 20 25 25 Si 1.86796 * 120.00514 * 164.49201 * 23 21 20 26 26 H 1.48500 * 109.46944 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47245 * 119.99308 * 25 23 21 28 28 H 1.48496 * 109.47010 * 239.99784 * 25 23 21 29 29 H 1.09000 * 109.47177 * 299.64688 * 1 2 3 30 30 H 1.09001 * 109.47546 * 59.63993 * 1 2 3 31 31 H 1.08998 * 109.47102 * 179.64276 * 1 2 3 32 32 H 0.97002 * 120.00299 * 335.07249 * 6 4 2 33 33 H 1.08006 * 126.43450 * 359.95361 * 10 9 7 34 34 H 1.08994 * 109.46477 * 58.66652 * 17 4 2 35 35 H 1.08996 * 109.46129 * 178.63227 * 17 4 2 36 36 H 1.09004 * 109.46802 * 301.36839 * 18 17 4 37 37 H 1.09003 * 109.52338 * 181.30708 * 18 17 4 38 38 H 1.08998 * 109.58744 * 185.59142 * 19 18 17 39 39 H 1.09001 * 109.69932 * 65.23620 * 19 18 17 40 40 H 0.96996 * 120.00350 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7294 1.2453 5 1 1.6025 -1.7251 1.2915 6 7 1.6706 0.0267 2.4434 7 6 1.5485 -0.6048 3.6279 8 8 1.7485 -1.8031 3.7022 9 6 1.1749 0.1514 4.8262 10 6 1.0149 -0.3614 6.0969 11 6 0.6590 0.7039 6.9291 12 17 0.3381 0.6071 8.6324 13 6 0.6034 1.8264 6.1682 14 17 0.1970 3.4147 6.7390 15 7 0.9200 1.5043 4.8890 16 1 0.9567 2.1223 4.1422 17 6 3.5674 -0.8486 1.1704 18 6 3.9569 -1.6656 -0.0637 19 6 3.4650 -0.9468 -1.3239 20 7 2.0225 -0.6995 -1.1945 21 6 1.1536 -1.1133 -2.1687 22 1 0.1397 -1.3808 -1.9098 23 6 1.5758 -1.1893 -3.4888 24 7 2.6862 -0.5880 -3.8602 25 14 0.5681 -2.1445 -4.7384 26 1 -0.6265 -2.7231 -4.0725 27 1 0.1351 -1.2319 -5.8269 28 1 1.3947 -3.2383 -5.3088 29 1 -0.3633 0.5083 0.8931 30 1 -0.3634 0.5194 -0.8867 31 1 -0.3633 -1.0276 -0.0064 32 1 1.5113 0.9817 2.3843 33 1 1.1407 -1.3925 6.3931 34 1 4.0066 0.1465 1.0999 35 1 3.9373 -1.3458 2.0671 36 1 3.4982 -2.6527 -0.0054 37 1 5.0411 -1.7700 -0.1041 38 1 3.6517 -1.5715 -2.1973 39 1 3.9900 0.0020 -1.4343 40 1 2.9815 -0.6414 -4.7826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993642048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:17 Heat of formation + Delta-G solvation = 13.521469 kcal Electronic energy + Delta-G solvation = -25637.207037 eV Core-core repulsion = 21732.868197 eV Total energy + Delta-G solvation = -3904.338841 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83596 -39.57176 -37.68874 -37.19407 -36.77371 -34.53828 -32.71980 -31.89618 -31.44367 -30.02442 -28.79019 -26.32238 -25.10822 -23.59508 -21.91077 -21.10912 -20.79869 -20.58680 -19.88199 -18.85890 -16.66911 -16.41702 -15.84060 -15.76443 -15.15037 -14.96132 -14.56215 -14.36908 -13.92640 -13.82536 -13.70194 -13.60628 -13.44051 -12.89390 -12.64392 -12.28423 -12.16622 -11.82875 -11.80868 -11.63649 -11.22530 -11.22207 -10.99707 -10.82950 -10.65911 -10.41481 -10.31612 -10.15601 -10.09326 -9.77890 -9.48336 -9.39502 -8.92857 -8.59066 -8.51953 -6.75112 -5.86645 -3.31889 0.88919 1.05562 1.76243 1.87854 2.77865 3.12985 3.16207 3.32668 3.41487 3.43142 4.41541 4.46061 4.57714 5.02132 5.20053 5.27623 5.29407 5.41679 5.48317 5.67693 5.80861 5.86536 5.94634 6.04651 6.10116 6.21846 6.28634 6.41495 6.46999 6.52707 6.59466 6.66757 6.75141 6.87577 6.95377 7.31970 7.46223 7.59522 7.75605 8.09809 8.37443 9.12701 9.74978 10.31107 11.22069 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.002356 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.954043 B =11880.204469 C =12220.183409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.027 0.973 4 C 0.130 3.870 5 H 0.091 0.909 6 N -0.714 5.714 7 C 0.586 3.414 8 O -0.518 6.518 9 C -0.008 4.008 10 C -0.091 4.091 11 C -0.098 4.098 12 Cl -0.030 7.030 13 C 0.095 3.905 14 Cl 0.003 6.997 15 N -0.521 5.521 16 H 0.428 0.572 17 C -0.117 4.117 18 C -0.140 4.140 19 C 0.169 3.831 20 N -0.581 5.581 21 C -0.254 4.254 22 H 0.071 0.929 23 C 0.006 3.994 24 N -0.901 5.901 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.288 1.288 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.390 0.610 33 H 0.168 0.832 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 7.052 20.420 21.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.060 3.940 3 H 0.044 0.956 4 C 0.025 3.975 5 H 0.109 0.891 6 N -0.364 5.364 7 C 0.371 3.629 8 O -0.393 6.393 9 C -0.122 4.122 10 C -0.117 4.117 11 C -0.133 4.133 12 Cl -0.001 7.001 13 C -0.049 4.049 14 Cl 0.031 6.969 15 N -0.123 5.123 16 H 0.268 0.732 17 C -0.156 4.156 18 C -0.180 4.180 19 C 0.044 3.956 20 N -0.304 5.304 21 C -0.384 4.384 22 H 0.089 0.911 23 C -0.193 4.193 24 N -0.545 5.545 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.215 1.215 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.223 0.777 33 H 0.186 0.814 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.038 0.962 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.502 6.383 20.286 21.413 hybrid contribution -0.519 0.673 -0.850 1.202 sum -3.021 7.056 19.436 20.897 Atomic orbital electron populations 1.21825 0.95585 1.01907 1.00139 1.20556 0.93260 0.93507 0.86700 0.95572 1.21921 0.95411 0.96952 0.83171 0.89098 1.46072 1.69936 1.11806 1.08559 1.16804 0.77876 0.86725 0.81453 1.90891 1.50413 1.13304 1.84723 1.20679 1.13171 0.81612 0.96787 1.21157 1.01974 0.99460 0.89115 1.19605 1.13714 0.92733 0.87249 1.98351 1.94367 1.98319 1.09078 1.20561 1.10355 0.88560 0.85429 1.98430 1.91876 1.20015 1.86579 1.41924 1.53230 1.08944 1.08185 0.73192 1.21769 0.95037 1.00189 0.98604 1.22183 0.99378 0.99745 0.96677 1.20839 0.83048 0.97240 0.94505 1.44031 1.03180 1.65029 1.18166 1.19193 0.95237 1.37962 0.85978 0.91138 1.25094 0.97864 0.99366 0.97007 1.70031 1.24089 1.43608 1.16759 0.86237 0.79664 0.79588 0.81370 1.20166 1.21720 1.21493 0.94554 0.91631 0.92450 0.77713 0.81446 0.92746 0.92965 0.92373 0.92854 0.89410 0.96225 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.84 37.16 0.29 -2.08 16 2 C 0.17 3.14 3.03 -67.60 -0.21 2.93 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 4 C 0.13 2.17 1.99 -67.81 -0.14 2.04 16 5 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 6 N -0.71 -9.20 4.57 -55.04 -0.25 -9.45 16 7 C 0.59 8.06 7.75 -12.91 -0.10 7.96 16 8 O -0.52 -9.08 16.55 5.18 0.09 -8.99 16 9 C -0.01 -0.09 7.06 -81.93 -0.58 -0.67 16 10 C -0.09 -0.99 10.64 -39.10 -0.42 -1.41 16 11 C -0.10 -0.99 6.66 -39.90 -0.27 -1.26 16 12 Cl -0.03 -0.28 29.12 -51.86 -1.51 -1.79 16 13 C 0.10 0.87 7.75 -16.76 -0.13 0.74 16 14 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 15 N -0.52 -4.38 6.01 -6.51 -0.04 -4.42 16 16 H 0.43 2.46 8.19 -40.82 -0.33 2.12 16 17 C -0.12 -1.97 5.46 -26.69 -0.15 -2.11 16 18 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 19 C 0.17 3.83 5.28 -3.71 -0.02 3.81 16 20 N -0.58 -13.49 2.99 -164.78 -0.49 -13.99 16 21 C -0.25 -6.53 8.58 -15.06 -0.13 -6.65 16 22 H 0.07 1.78 6.23 -52.48 -0.33 1.45 16 23 C 0.01 0.15 4.94 -17.43 -0.09 0.06 16 24 N -0.90 -25.08 11.23 55.49 0.62 -24.46 16 25 Si 0.90 21.01 29.58 -169.99 -5.03 15.99 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H 0.04 0.50 7.78 -51.93 -0.40 0.10 16 30 H 0.06 1.22 7.67 -51.93 -0.40 0.83 16 31 H 0.06 1.06 7.40 -51.93 -0.38 0.67 16 32 H 0.39 3.85 7.73 -40.82 -0.32 3.53 16 33 H 0.17 1.74 8.06 -52.48 -0.42 1.32 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.09 2.25 6.15 -51.93 -0.32 1.93 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -29.56 357.49 -9.79 -39.34 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.97 Total: 3.29 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.08 Total: 0.57 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.16 Total: -52.31 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -3.02 Total: -3.28 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.56 -9.79 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993642048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.866 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds