Wall clock time and date at job start Wed Apr 1 2020 03:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48504 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47329 * 299.99740 * 3 2 1 6 6 H 1.48498 * 109.46744 * 59.99855 * 3 2 1 7 7 C 1.38820 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00093 * 168.90599 * 7 2 1 9 9 N 1.36936 * 119.99752 * 348.63422 * 7 2 1 10 10 C 1.46934 * 120.62863 * 328.90653 * 9 7 2 11 11 C 1.53192 * 108.77398 * 233.58541 * 10 9 7 12 12 C 1.53040 * 109.31674 * 305.36996 * 11 10 9 13 13 C 1.53039 * 109.53940 * 61.35927 * 12 11 10 14 14 C 1.46918 * 120.63288 * 148.63003 * 9 7 2 15 15 H 1.08997 * 109.58944 * 246.20191 * 14 9 7 16 16 C 1.53005 * 109.58612 * 6.62396 * 14 9 7 17 17 N 1.46498 * 109.46918 * 299.77903 * 16 14 9 18 18 C 1.34776 * 119.99785 * 179.97438 * 17 16 14 19 19 O 1.21712 * 120.00126 * 0.02562 * 18 17 16 20 20 C 1.46549 * 119.99853 * 179.97438 * 18 17 16 21 21 C 1.37957 * 126.22070 * 179.69063 * 20 18 17 22 22 C 1.39792 * 107.12975 * 179.90787 * 21 20 18 23 23 Cl 1.73603 * 126.06627 * 180.11331 * 22 21 20 24 24 C 1.35725 * 107.87380 * 0.36039 * 22 21 20 25 25 Cl 1.73601 * 125.58707 * 179.75778 * 24 22 21 26 26 N 1.35670 * 108.82835 * 359.77685 * 24 22 21 27 27 H 0.96993 * 125.69101 * 180.02562 * 26 24 22 28 28 H 0.96993 * 119.99903 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58803 * 353.37404 * 10 9 7 30 30 H 1.08998 * 109.58636 * 113.66241 * 10 9 7 31 31 H 1.09009 * 109.49252 * 65.31763 * 11 10 9 32 32 H 1.08993 * 109.49819 * 185.37708 * 11 10 9 33 33 H 1.08995 * 109.46220 * 181.38795 * 12 11 10 34 34 H 1.09001 * 109.45612 * 301.35419 * 12 11 10 35 35 H 1.09002 * 109.49603 * 58.59143 * 13 12 11 36 36 H 1.09000 * 109.50108 * 178.65187 * 13 12 11 37 37 H 1.08995 * 109.47163 * 59.77765 * 16 14 9 38 38 H 1.09003 * 109.47178 * 179.77717 * 16 14 9 39 39 H 0.96995 * 120.00276 * 359.97438 * 17 16 14 40 40 H 1.08003 * 126.43930 * 0.03128 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0752 -1.2110 -0.1794 9 7 1.3457 -2.3764 0.2348 10 6 0.1654 -2.4069 1.1094 11 6 0.3808 -3.4699 2.1912 12 6 0.7056 -4.8098 1.5268 13 6 1.9961 -4.6788 0.7146 14 6 1.7957 -3.6284 -0.3884 15 1 1.0424 -3.9761 -1.0953 16 6 3.1185 -3.3909 -1.1196 17 7 2.9267 -2.3763 -2.1588 18 6 3.9630 -2.0029 -2.9354 19 8 5.0581 -2.5089 -2.7737 20 6 3.7710 -0.9883 -3.9754 21 6 4.7379 -0.5084 -4.8344 22 6 4.1232 0.4393 -5.6580 23 17 4.8925 1.3478 -6.9216 24 6 2.8195 0.5272 -5.2909 25 17 1.6356 1.5731 -6.0108 26 7 2.5932 -0.3359 -4.2689 27 1 1.7441 -0.4713 -3.8201 28 1 -0.4850 0.8400 -0.0004 29 1 0.0319 -1.4314 1.5771 30 1 -0.7185 -2.6545 0.5217 31 1 1.2094 -3.1722 2.8339 32 1 -0.5253 -3.5697 2.7886 33 1 0.8350 -5.5735 2.2936 34 1 -0.1124 -5.0947 0.8650 35 1 2.8094 -4.3698 1.3712 36 1 2.2397 -5.6396 0.2611 37 1 3.8695 -3.0458 -0.4091 38 1 3.4526 -4.3218 -1.5779 39 1 2.0540 -1.9733 -2.2880 40 1 5.7745 -0.8098 -4.8663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024577285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:02 Heat of formation + Delta-G solvation = 10.951656 kcal Electronic energy + Delta-G solvation = -26354.223353 eV Core-core repulsion = 22449.773076 eV Total energy + Delta-G solvation = -3904.450276 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42003 -39.04940 -37.72005 -36.82674 -36.47577 -34.40255 -33.21075 -31.38740 -30.80759 -30.03489 -29.06300 -26.15212 -24.95405 -22.61275 -22.18937 -21.04324 -20.58782 -20.19937 -19.34030 -18.75695 -16.70405 -16.01119 -15.81752 -15.42943 -15.21129 -14.69709 -14.32636 -14.13892 -13.85648 -13.70538 -13.48763 -13.40480 -13.23705 -12.95243 -12.53495 -12.15088 -11.98716 -11.96928 -11.70355 -11.45360 -11.32250 -11.06436 -10.93483 -10.89377 -10.67389 -10.39383 -10.24073 -10.09523 -9.89251 -9.60554 -9.45950 -9.03216 -8.77834 -8.51366 -8.16954 -6.80490 -5.98912 -3.47719 1.30641 1.46156 2.08370 2.23738 3.19187 3.22774 3.32117 3.36350 3.53183 3.65384 4.29092 4.85798 5.00912 5.12005 5.17412 5.38409 5.45198 5.55731 5.58850 5.63398 5.86004 5.91926 6.03477 6.15135 6.22320 6.28288 6.30888 6.43890 6.50686 6.61262 6.65043 6.74903 6.83401 6.92454 6.99680 7.29198 7.56983 7.64220 7.95740 8.26321 8.52759 9.01584 9.62568 10.20820 11.06379 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003813 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.344908 B = 7340.858488 C = 8364.748412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.252 4.252 8 H 0.071 0.929 9 N -0.590 5.590 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.108 4.108 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.135 3.865 17 N -0.689 5.689 18 C 0.581 3.419 19 O -0.541 6.541 20 C 0.000 4.000 21 C -0.099 4.099 22 C -0.100 4.100 23 Cl -0.036 7.036 24 C 0.096 3.904 25 Cl -0.001 7.001 26 N -0.514 5.514 27 H 0.434 0.566 28 H 0.255 0.745 29 H 0.088 0.912 30 H 0.018 0.982 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.410 0.590 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 -2.740 -8.154 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.314 5.314 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.011 3.989 17 N -0.339 5.339 18 C 0.367 3.633 19 O -0.419 6.419 20 C -0.115 4.115 21 C -0.125 4.125 22 C -0.135 4.135 23 Cl -0.008 7.008 24 C -0.049 4.049 25 Cl 0.027 6.973 26 N -0.115 5.115 27 H 0.275 0.725 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.247 0.753 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 2.461 -2.850 -8.078 8.912 hybrid contribution -0.660 1.440 0.148 1.591 sum 1.801 -1.410 -7.930 8.253 Atomic orbital electron populations 1.69986 1.05054 1.25502 1.53720 1.25086 0.95232 0.97983 1.00805 0.86478 0.79945 0.84412 0.77770 1.19964 1.21434 1.21288 1.19284 0.91442 0.83705 1.43752 0.91163 1.44109 1.32741 1.02680 1.51869 1.20801 0.87829 0.97421 0.89284 1.22194 0.99872 0.96655 0.99642 1.21362 0.97328 0.97427 0.98409 1.22007 0.98093 0.98108 0.98464 1.20837 0.92803 0.88693 0.92413 0.94959 1.21368 0.98607 0.89733 0.89190 1.45910 1.12689 1.41468 1.33811 1.16792 0.85034 0.81096 0.80425 1.90821 1.24651 1.55831 1.70643 1.20642 0.85299 1.02396 1.03204 1.21050 0.99796 0.96969 0.94706 1.19527 0.90780 1.03611 0.99612 1.98326 1.80324 1.72912 1.49222 1.20540 0.91054 0.97629 0.95720 1.98414 1.56230 1.62414 1.80247 1.42046 1.12383 1.30353 1.26681 0.72508 0.93511 0.89412 0.96391 0.92824 0.93517 0.93651 0.92895 0.91976 0.92963 0.91085 0.92100 0.75312 0.81695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.86 11.07 55.49 0.61 -22.24 16 2 C 0.01 0.20 5.03 -17.43 -0.09 0.11 16 3 Si 0.88 20.30 29.57 -169.99 -5.03 15.27 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -5.87 6.96 -15.06 -0.10 -5.98 16 8 H 0.07 1.71 5.87 -52.49 -0.31 1.40 16 9 N -0.59 -12.54 2.97 -164.52 -0.49 -13.02 16 10 C 0.17 3.66 5.25 -3.71 -0.02 3.64 16 11 C -0.14 -2.54 6.08 -26.61 -0.16 -2.70 16 12 C -0.11 -1.66 5.88 -26.69 -0.16 -1.81 16 13 C -0.13 -1.98 5.40 -26.39 -0.14 -2.12 16 14 C 0.16 2.83 3.03 -67.38 -0.20 2.63 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 16 C 0.13 2.33 4.44 -4.04 -0.02 2.31 16 17 N -0.69 -12.03 3.85 -61.66 -0.24 -12.27 16 18 C 0.58 10.38 7.78 -12.91 -0.10 10.28 16 19 O -0.54 -10.93 16.88 5.18 0.09 -10.84 16 20 C 0.00 -0.01 7.06 -81.94 -0.58 -0.58 16 21 C -0.10 -1.48 10.64 -39.10 -0.42 -1.89 16 22 C -0.10 -1.43 6.66 -39.90 -0.27 -1.69 16 23 Cl -0.04 -0.46 29.12 -51.86 -1.51 -1.97 16 24 C 0.10 1.36 7.75 -16.75 -0.13 1.23 16 25 Cl 0.00 -0.02 29.13 -51.86 -1.51 -1.53 16 26 N -0.51 -7.53 6.01 -6.51 -0.04 -7.57 16 27 H 0.43 6.03 8.19 -40.82 -0.33 5.70 16 28 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 29 H 0.09 2.14 6.11 -51.93 -0.32 1.82 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.36 7.42 -51.93 -0.39 0.97 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.41 7.25 6.52 -40.82 -0.27 6.99 16 40 H 0.17 2.26 8.06 -52.48 -0.42 1.84 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -26.10 355.63 -10.11 -36.21 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -4.97 Total: 9.18 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.39 Total: 3.42 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.15 Total: -55.10 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -3.02 Total: -3.50 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.10 -10.11 -36.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024577285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.163 kcal (2) G-P(sol) polarization free energy of solvation -26.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds