Wall clock time and date at job start Wed Apr 1 2020 03:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48504 * 109.47249 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47329 * 299.99740 * 3 2 1 6 6 H 1.48498 * 109.46744 * 59.99855 * 3 2 1 7 7 C 1.38820 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00093 * 168.90599 * 7 2 1 9 9 N 1.36936 * 119.99752 * 348.63422 * 7 2 1 10 10 C 1.46934 * 120.62863 * 328.90653 * 9 7 2 11 11 C 1.53192 * 108.77398 * 233.58541 * 10 9 7 12 12 C 1.53040 * 109.31674 * 305.36996 * 11 10 9 13 13 C 1.53039 * 109.53940 * 61.35927 * 12 11 10 14 14 C 1.46918 * 120.63288 * 148.63003 * 9 7 2 15 15 H 1.08997 * 109.58944 * 246.20191 * 14 9 7 16 16 C 1.53005 * 109.58612 * 6.62396 * 14 9 7 17 17 N 1.46498 * 109.46918 * 299.77903 * 16 14 9 18 18 C 1.34776 * 119.99785 * 179.97438 * 17 16 14 19 19 O 1.21712 * 120.00126 * 0.02562 * 18 17 16 20 20 C 1.46549 * 119.99853 * 179.97438 * 18 17 16 21 21 C 1.37957 * 126.22070 * 179.69063 * 20 18 17 22 22 C 1.39792 * 107.12975 * 179.90787 * 21 20 18 23 23 Cl 1.73603 * 126.06627 * 180.11331 * 22 21 20 24 24 C 1.35725 * 107.87380 * 0.36039 * 22 21 20 25 25 Cl 1.73601 * 125.58707 * 179.75778 * 24 22 21 26 26 N 1.35670 * 108.82835 * 359.77685 * 24 22 21 27 27 H 0.96993 * 125.69101 * 180.02562 * 26 24 22 28 28 H 0.96993 * 119.99903 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.58803 * 353.37404 * 10 9 7 30 30 H 1.08998 * 109.58636 * 113.66241 * 10 9 7 31 31 H 1.09009 * 109.49252 * 65.31763 * 11 10 9 32 32 H 1.08993 * 109.49819 * 185.37708 * 11 10 9 33 33 H 1.08995 * 109.46220 * 181.38795 * 12 11 10 34 34 H 1.09001 * 109.45612 * 301.35419 * 12 11 10 35 35 H 1.09002 * 109.49603 * 58.59143 * 13 12 11 36 36 H 1.09000 * 109.50108 * 178.65187 * 13 12 11 37 37 H 1.08995 * 109.47163 * 59.77765 * 16 14 9 38 38 H 1.09003 * 109.47178 * 179.77717 * 16 14 9 39 39 H 0.96995 * 120.00276 * 359.97438 * 17 16 14 40 40 H 1.08003 * 126.43930 * 0.03128 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0752 -1.2110 -0.1794 9 7 1.3457 -2.3764 0.2348 10 6 0.1654 -2.4069 1.1094 11 6 0.3808 -3.4699 2.1912 12 6 0.7056 -4.8098 1.5268 13 6 1.9961 -4.6788 0.7146 14 6 1.7957 -3.6284 -0.3884 15 1 1.0424 -3.9761 -1.0953 16 6 3.1185 -3.3909 -1.1196 17 7 2.9267 -2.3763 -2.1588 18 6 3.9630 -2.0029 -2.9354 19 8 5.0581 -2.5089 -2.7737 20 6 3.7710 -0.9883 -3.9754 21 6 4.7379 -0.5084 -4.8344 22 6 4.1232 0.4393 -5.6580 23 17 4.8925 1.3478 -6.9216 24 6 2.8195 0.5272 -5.2909 25 17 1.6356 1.5731 -6.0108 26 7 2.5932 -0.3359 -4.2689 27 1 1.7441 -0.4713 -3.8201 28 1 -0.4850 0.8400 -0.0004 29 1 0.0319 -1.4314 1.5771 30 1 -0.7185 -2.6545 0.5217 31 1 1.2094 -3.1722 2.8339 32 1 -0.5253 -3.5697 2.7886 33 1 0.8350 -5.5735 2.2936 34 1 -0.1124 -5.0947 0.8650 35 1 2.8094 -4.3698 1.3712 36 1 2.2397 -5.6396 0.2611 37 1 3.8695 -3.0458 -0.4091 38 1 3.4526 -4.3218 -1.5779 39 1 2.0540 -1.9733 -2.2880 40 1 5.7745 -0.8098 -4.8663 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024577285.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:01 Heat of formation + Delta-G solvation = -2.602241 kcal Electronic energy + Delta-G solvation = -26354.811094 eV Core-core repulsion = 22449.773076 eV Total energy + Delta-G solvation = -3905.038017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61642 -40.47708 -39.20802 -37.92497 -37.53947 -35.83521 -34.92718 -32.71912 -32.11641 -31.68531 -30.31305 -27.69510 -26.53812 -24.01510 -23.65941 -22.39354 -21.83499 -21.47082 -20.78761 -20.13859 -18.33510 -17.46551 -17.29851 -16.83021 -16.54631 -15.97710 -15.83731 -15.68974 -15.20512 -15.11393 -14.82417 -14.69413 -14.52978 -14.41420 -14.06307 -13.62223 -13.47372 -13.02348 -12.93768 -12.90249 -12.78480 -12.58134 -12.51612 -12.34034 -12.05955 -11.99624 -11.80532 -11.52737 -11.37109 -11.10416 -10.97970 -10.55885 -10.19618 -10.00357 -9.36899 -8.57775 -7.85988 -5.34008 0.07346 0.32966 0.98342 1.06649 1.33335 1.43549 1.48234 1.98746 2.20700 2.31847 2.43954 3.28475 3.56692 3.68776 3.76671 3.98588 4.22343 4.24322 4.28464 4.43960 4.47463 4.55084 4.66012 4.75315 4.88069 5.01120 5.03821 5.15156 5.24055 5.25379 5.29056 5.35341 5.47610 5.52079 5.65530 5.73353 5.81567 5.85972 6.42153 6.54253 7.11131 7.17197 7.86168 8.39422 9.17010 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.003813 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.344908 B = 7340.858488 C = 8364.748412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.025 4.025 3 Si 0.923 3.077 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.062 0.938 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.137 4.137 12 C -0.103 4.103 13 C -0.122 4.122 14 C 0.159 3.841 15 H 0.037 0.963 16 C 0.138 3.862 17 N -0.689 5.689 18 C 0.583 3.417 19 O -0.568 6.568 20 C -0.020 4.020 21 C -0.093 4.093 22 C -0.106 4.106 23 Cl -0.020 7.020 24 C 0.097 3.903 25 Cl 0.013 6.987 26 N -0.512 5.512 27 H 0.435 0.565 28 H 0.248 0.752 29 H 0.052 0.948 30 H 0.003 0.997 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.408 0.592 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.231 -3.920 -8.687 9.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.222 4.222 3 Si 0.753 3.247 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.079 0.921 9 N -0.326 5.326 10 C 0.051 3.949 11 C -0.176 4.176 12 C -0.141 4.141 13 C -0.162 4.162 14 C 0.053 3.947 15 H 0.055 0.945 16 C 0.015 3.985 17 N -0.338 5.338 18 C 0.370 3.630 19 O -0.449 6.449 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.141 4.141 23 Cl 0.008 6.992 24 C -0.048 4.048 25 Cl 0.042 6.958 26 N -0.113 5.113 27 H 0.277 0.723 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.245 0.755 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.698 -4.049 -8.610 9.890 hybrid contribution -0.719 1.815 0.264 1.970 sum 1.979 -2.234 -8.347 8.864 Atomic orbital electron populations 1.70072 1.05647 1.25171 1.55699 1.25367 0.95484 0.99278 1.02046 0.85892 0.78687 0.83006 0.77079 1.20767 1.21467 1.22430 1.19247 0.90984 0.84516 1.41532 0.92063 1.44276 1.32500 1.03355 1.52478 1.20607 0.87405 0.96921 0.89926 1.22060 1.00309 0.96774 0.98416 1.21345 0.97225 0.96465 0.99018 1.21967 0.98042 0.98581 0.97565 1.21002 0.92801 0.87670 0.93202 0.94517 1.21364 0.97819 0.90470 0.88892 1.45909 1.12558 1.41518 1.33782 1.16957 0.84530 0.81027 0.80486 1.90797 1.25493 1.56978 1.71591 1.20406 0.86214 1.03123 1.03730 1.21246 1.00092 0.96520 0.94122 1.19602 0.90811 1.03663 0.99996 1.98332 1.80022 1.72431 1.48366 1.20738 0.91540 0.97294 0.95275 1.98421 1.55681 1.61836 1.79906 1.42014 1.12161 1.30314 1.26792 0.72308 0.94173 0.92966 0.97917 0.93747 0.91972 0.90928 0.92375 0.92763 0.89848 0.93071 0.89990 0.75499 0.80761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.62 11.07 21.65 0.24 -47.38 16 2 C -0.02 -1.23 5.03 84.86 0.43 -0.80 16 3 Si 0.92 42.23 29.57 68.60 2.03 44.26 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 7 C -0.23 -10.86 6.96 84.04 0.59 -10.28 16 8 H 0.06 2.99 5.87 -2.91 -0.02 2.98 16 9 N -0.60 -25.37 2.97 -674.42 -2.00 -27.37 16 10 C 0.18 7.53 5.25 86.36 0.45 7.98 16 11 C -0.14 -4.59 6.08 30.67 0.19 -4.41 16 12 C -0.10 -2.85 5.88 30.62 0.18 -2.67 16 13 C -0.12 -3.46 5.40 30.82 0.17 -3.30 16 14 C 0.16 5.41 3.03 45.12 0.14 5.54 16 15 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 16 C 0.14 4.63 4.44 86.38 0.38 5.01 16 17 N -0.69 -23.76 3.85 -467.20 -1.80 -25.56 16 18 C 0.58 20.65 7.78 86.41 0.67 21.32 16 19 O -0.57 -22.76 16.88 -4.39 -0.07 -22.83 16 20 C -0.02 -0.63 7.06 40.31 0.28 -0.35 16 21 C -0.09 -2.69 10.64 22.58 0.24 -2.45 16 22 C -0.11 -2.87 6.66 22.06 0.15 -2.72 16 23 Cl -0.02 -0.47 29.12 -2.72 -0.08 -0.55 16 24 C 0.10 2.66 7.75 83.52 0.65 3.30 16 25 Cl 0.01 0.32 29.13 -2.72 -0.08 0.24 16 26 N -0.51 -14.69 6.01 -174.51 -1.05 -15.74 16 27 H 0.44 11.99 8.19 -92.71 -0.76 11.23 16 28 H 0.25 12.81 8.31 -92.71 -0.77 12.04 16 29 H 0.05 2.60 6.11 -2.39 -0.01 2.58 16 30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 1.93 7.42 -2.39 -0.02 1.91 16 38 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.41 14.38 6.52 -92.71 -0.60 13.78 16 40 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -55.35 355.63 1.44 -53.92 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: -0.26 Total: 24.84 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 4.51 Total: 16.19 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -4.61 Total: -116.06 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.07 Total: -22.83 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.16 Total: -0.31 kcal Total: -55.35 1.44 -53.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024577285.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.313 kcal (2) G-P(sol) polarization free energy of solvation -55.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds