Wall clock time and date at job start Wed Apr 1 2020 04:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.91335 * 2 1 4 4 C 1.54908 * 111.00467 * 236.09456 * 2 1 3 5 5 N 1.47421 * 104.83172 * 204.91650 * 4 2 1 6 6 C 1.34770 * 125.64988 * 204.08729 * 5 4 2 7 7 O 1.21715 * 120.00145 * 4.28978 * 6 5 4 8 8 C 1.46543 * 120.00623 * 184.27966 * 6 5 4 9 9 C 1.37959 * 126.21943 * 4.74805 * 8 6 5 10 10 C 1.39785 * 107.13030 * 180.02562 * 9 8 6 11 11 Cl 1.73608 * 126.06392 * 179.97438 * 10 9 8 12 12 C 1.35723 * 107.87444 * 0.02562 * 10 9 8 13 13 Cl 1.73597 * 125.58407 * 180.02562 * 12 10 9 14 14 N 1.35657 * 108.83282 * 359.97438 * 12 10 9 15 15 C 1.46494 * 125.69674 * 180.26358 * 14 12 10 16 16 C 1.47025 * 108.70599 * 24.35411 * 5 4 2 17 17 C 1.54334 * 107.26179 * 358.59031 * 16 5 4 18 18 H 1.08996 * 110.52051 * 96.45437 * 17 16 5 19 19 N 1.46507 * 110.99978 * 219.60316 * 17 16 5 20 20 C 1.36942 * 119.99554 * 268.78169 * 19 17 16 21 21 H 1.07995 * 120.00119 * 359.97438 * 20 19 17 22 22 C 1.38816 * 119.99748 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99752 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99949 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47263 * 90.00727 * 24 22 20 26 26 H 1.48506 * 109.47083 * 210.00328 * 24 22 20 27 27 H 1.48496 * 109.47202 * 330.00155 * 24 22 20 28 28 H 1.09004 * 109.47275 * 182.45496 * 1 2 3 29 29 H 1.09002 * 109.46958 * 302.44796 * 1 2 3 30 30 H 1.09000 * 109.47308 * 62.45105 * 1 2 3 31 31 H 1.08995 * 110.36615 * 86.07666 * 4 2 1 32 32 H 1.09007 * 110.36660 * 323.75220 * 4 2 1 33 33 H 1.08005 * 126.43815 * 0.02562 * 9 8 6 34 34 H 1.08996 * 109.47304 * 264.59253 * 15 14 12 35 35 H 1.09006 * 109.47307 * 24.59743 * 15 14 12 36 36 H 1.09004 * 109.47170 * 144.58961 * 15 14 12 37 37 H 1.09001 * 109.88322 * 118.12898 * 16 5 4 38 38 H 1.08995 * 109.88500 * 239.30047 * 16 5 4 39 39 H 0.96991 * 120.00174 * 88.77734 * 19 17 16 40 40 H 0.96996 * 119.99548 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0853 -0.8067 -1.2002 5 7 3.4271 -1.2431 -0.7732 6 6 4.4476 -1.5617 -1.5938 7 8 4.3260 -1.4259 -2.7972 8 6 5.7037 -2.0716 -1.0373 9 6 5.9496 -2.3613 0.2889 10 6 7.2681 -2.8178 0.3730 11 17 8.0860 -3.3180 1.8203 12 6 7.7959 -2.7994 -0.8772 13 17 9.4107 -3.2770 -1.2992 14 7 6.8545 -2.3479 -1.7434 15 6 7.0300 -2.1866 -3.1888 16 6 3.4658 -1.2793 0.6961 17 6 2.0861 -0.8079 1.2023 18 1 1.4468 -1.6631 1.4211 19 7 2.2247 0.0488 2.3827 20 6 2.1953 -0.5024 3.6359 21 1 2.0697 -1.5685 3.7541 22 6 2.3261 0.3093 4.7544 23 7 2.2974 -0.2204 5.9589 24 14 2.5426 2.1534 4.5499 25 1 1.2107 2.8098 4.5365 26 1 3.3455 2.6859 5.6800 27 1 3.2440 2.4306 3.2707 28 1 -0.3634 -1.0267 0.0440 29 1 -0.3633 0.5514 0.8672 30 1 -0.3634 0.4753 -0.9111 31 1 2.1560 -0.1721 -2.0836 32 1 1.4519 -1.6705 -1.4023 33 1 5.2540 -2.2553 1.1083 34 1 7.3075 -1.1557 -3.4083 35 1 7.8164 -2.8566 -3.5364 36 1 6.0964 -2.4277 -3.6973 37 1 3.6601 -2.2963 1.0368 38 1 4.2424 -0.6083 1.0631 39 1 2.3372 1.0063 2.2765 40 1 2.3891 0.3468 6.7404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054711270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:32 Heat of formation + Delta-G solvation = 31.104438 kcal Electronic energy + Delta-G solvation = -25912.453916 eV Core-core repulsion = 22008.877530 eV Total energy + Delta-G solvation = -3903.576386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78409 -39.68635 -37.69933 -37.01798 -36.49743 -34.40085 -33.36743 -32.43958 -31.14292 -29.51722 -28.17182 -26.78151 -26.25566 -24.14764 -22.55087 -21.15225 -20.98915 -20.25562 -19.44046 -17.62920 -17.50661 -16.57637 -16.31105 -15.99754 -15.49759 -14.71221 -14.51751 -14.31725 -14.20026 -13.87640 -13.48971 -13.35342 -13.29687 -13.14303 -12.68288 -12.58446 -12.53593 -12.22690 -12.05059 -11.77245 -11.62497 -11.52990 -11.47181 -11.17859 -10.96069 -10.76413 -10.70561 -10.43640 -10.11699 -10.02878 -9.68083 -9.06516 -8.93535 -8.66182 -8.32432 -7.44604 -5.87464 -3.26062 1.06610 1.22417 1.97164 2.09252 2.60042 3.18496 3.19756 3.31097 3.33695 3.40592 4.32524 4.49154 4.49926 4.79584 4.81494 4.93585 4.95413 4.97150 5.24163 5.32698 5.39421 5.49098 5.51820 5.59410 5.64653 5.69793 5.75668 5.97708 6.03235 6.08937 6.16214 6.27218 6.32448 6.39629 6.43693 6.53547 6.66402 7.48201 7.85739 8.04995 8.30839 9.06877 9.79147 9.96393 11.29950 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.010769 B = 0.003806 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.539239 B = 7355.101691 C = 9381.440588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 H 0.082 0.918 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.604 3.396 7 O -0.557 6.557 8 C -0.014 4.014 9 C -0.125 4.125 10 C -0.096 4.096 11 Cl -0.028 7.028 12 C 0.088 3.912 13 Cl -0.002 7.002 14 N -0.398 5.398 15 C 0.065 3.935 16 C 0.060 3.940 17 C 0.182 3.818 18 H 0.080 0.920 19 N -0.733 5.733 20 C -0.256 4.256 21 H 0.094 0.906 22 C 0.014 3.986 23 N -0.927 5.927 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.364 0.636 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 -4.639 -17.360 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.139 4.139 3 H 0.101 0.899 4 C -0.004 4.004 5 N -0.328 5.328 6 C 0.393 3.607 7 O -0.438 6.438 8 C -0.128 4.128 9 C -0.150 4.150 10 C -0.131 4.131 11 Cl 0.001 6.999 12 C -0.055 4.055 13 Cl 0.026 6.974 14 N -0.075 5.075 15 C -0.075 4.075 16 C -0.065 4.065 17 C 0.070 3.930 18 H 0.098 0.902 19 N -0.374 5.374 20 C -0.385 4.385 21 H 0.111 0.889 22 C -0.183 4.183 23 N -0.573 5.573 24 Si 0.711 3.289 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.203 1.203 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.199 0.801 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.198 0.802 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.339 -4.761 -18.091 20.482 hybrid contribution 0.761 1.212 0.136 1.438 sum 9.100 -3.549 -17.955 20.440 Atomic orbital electron populations 1.21613 0.93440 1.02273 1.01833 1.22713 0.96695 0.99715 0.94747 0.89943 1.22319 0.81717 0.98469 0.97942 1.48085 1.11737 1.64853 1.08142 1.16291 0.81369 0.77879 0.85170 1.90775 1.82647 1.56272 1.14072 1.19922 0.88800 1.13263 0.90772 1.22139 0.95144 1.01812 0.95915 1.19672 0.94661 1.11979 0.86759 1.98358 1.78017 1.89831 1.33693 1.20576 0.85998 1.09849 0.89122 1.98394 1.15386 1.89924 1.93681 1.43665 1.08479 1.47269 1.08043 1.22384 1.05609 1.03778 0.75770 1.23761 1.03467 1.02011 0.77261 1.21252 0.91732 0.93936 0.86062 0.90193 1.42708 1.87896 1.05016 1.01822 1.19061 1.43603 0.94677 0.81159 0.88853 1.24660 1.01264 0.97342 0.95071 1.69692 1.56014 1.34568 0.97009 0.86621 0.77945 0.87199 0.77140 1.20961 1.21634 1.20264 0.92365 0.91408 0.93036 0.90494 0.90969 0.80088 0.89847 0.89517 0.87189 0.90704 0.90079 0.80219 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 9.29 37.16 0.35 -1.25 16 2 C -0.12 -1.60 3.27 -88.47 -0.29 -1.88 16 3 H 0.08 1.15 8.01 -51.93 -0.42 0.74 16 4 C 0.12 1.50 6.40 -2.53 -0.02 1.49 16 5 N -0.60 -8.56 3.33 -172.10 -0.57 -9.14 16 6 C 0.60 9.14 7.81 -12.92 -0.10 9.04 16 7 O -0.56 -9.16 15.00 5.18 0.08 -9.08 16 8 C -0.01 -0.20 6.85 -81.93 -0.56 -0.76 16 9 C -0.12 -1.78 9.35 -39.11 -0.37 -2.14 16 10 C -0.10 -1.33 6.66 -39.90 -0.27 -1.59 16 11 Cl -0.03 -0.37 29.12 -51.86 -1.51 -1.88 16 12 C 0.09 1.12 7.39 -16.76 -0.12 0.99 16 13 Cl 0.00 -0.02 28.39 -51.86 -1.47 -1.50 16 14 N -0.40 -5.05 3.17 -116.65 -0.37 -5.42 16 15 C 0.06 0.63 10.36 59.84 0.62 1.25 16 16 C 0.06 0.92 4.78 -3.06 -0.01 0.90 16 17 C 0.18 2.98 3.07 -66.09 -0.20 2.78 16 18 H 0.08 1.33 7.96 -51.93 -0.41 0.92 16 19 N -0.73 -15.25 4.97 -51.64 -0.26 -15.51 16 20 C -0.26 -6.52 10.44 -15.06 -0.16 -6.67 16 21 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 22 C 0.01 0.37 5.50 -17.43 -0.10 0.27 16 23 N -0.93 -27.55 13.97 55.49 0.78 -26.78 16 24 Si 0.88 20.81 27.74 -169.99 -4.71 16.10 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 28 H 0.06 0.66 8.11 -51.93 -0.42 0.23 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 32 H 0.07 0.84 8.04 -51.93 -0.42 0.42 16 33 H 0.18 2.60 4.43 -52.48 -0.23 2.37 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.65 7.58 -51.93 -0.39 0.25 16 36 H 0.11 1.16 6.53 -51.93 -0.34 0.82 16 37 H 0.07 1.10 6.37 -51.93 -0.33 0.77 16 38 H 0.08 1.34 7.33 -51.93 -0.38 0.96 16 39 H 0.36 7.59 5.62 -40.82 -0.23 7.36 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -29.82 356.36 -8.75 -38.57 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.85 Total: 6.84 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.23 Total: 2.42 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.42 Total: -56.84 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.08 Total: -9.08 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.71 Total: 16.10 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -2.98 Total: -3.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.82 -8.75 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054711270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.676 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds