Wall clock time and date at job start Wed Apr 1 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.88252 * 2 1 4 4 C 1.55131 * 110.93667 * 124.07329 * 2 1 3 5 5 N 1.47429 * 104.71958 * 155.28881 * 4 2 1 6 6 C 1.34776 * 125.64950 * 155.81641 * 5 4 2 7 7 O 1.21724 * 119.99617 * 4.39177 * 6 5 4 8 8 C 1.46539 * 120.00477 * 184.39173 * 6 5 4 9 9 C 1.37963 * 126.21828 * 354.12173 * 8 6 5 10 10 C 1.39799 * 107.12641 * 180.20752 * 9 8 6 11 11 Cl 1.73598 * 126.06079 * 179.75856 * 10 9 8 12 12 C 1.35720 * 107.87406 * 359.59712 * 10 9 8 13 13 Cl 1.73601 * 125.58168 * 180.17293 * 12 10 9 14 14 N 1.35673 * 108.83178 * 0.40296 * 12 10 9 15 15 C 1.46492 * 125.69292 * 179.74539 * 14 12 10 16 16 C 1.47019 * 108.70456 * 335.55575 * 5 4 2 17 17 C 1.54330 * 107.27007 * 1.28654 * 16 5 4 18 18 H 1.09002 * 110.71404 * 263.65350 * 17 16 5 19 19 N 1.46497 * 110.72147 * 140.55837 * 17 16 5 20 20 C 1.36937 * 120.00094 * 86.44893 * 19 17 16 21 21 H 1.08001 * 120.00294 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00173 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00240 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99807 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47063 * 89.99703 * 24 22 20 26 26 H 1.48505 * 109.46841 * 210.00119 * 24 22 20 27 27 H 1.48499 * 109.46825 * 329.99607 * 24 22 20 28 28 H 1.09000 * 109.47028 * 183.88401 * 1 2 3 29 29 H 1.08998 * 109.47212 * 303.88285 * 1 2 3 30 30 H 1.09000 * 109.47210 * 63.88436 * 1 2 3 31 31 H 1.09000 * 110.50122 * 36.45349 * 4 2 1 32 32 H 1.09000 * 110.34676 * 274.05154 * 4 2 1 33 33 H 1.07993 * 126.43776 * 359.93524 * 9 8 6 34 34 H 1.09004 * 109.47567 * 274.76076 * 15 14 12 35 35 H 1.08998 * 109.47594 * 34.76461 * 15 14 12 36 36 H 1.08997 * 109.46833 * 154.76211 * 15 14 12 37 37 H 1.09003 * 109.88355 * 120.69976 * 16 5 4 38 38 H 1.08995 * 109.88629 * 241.86751 * 16 5 4 39 39 H 0.96998 * 120.00165 * 266.45077 * 19 17 16 40 40 H 0.97003 * 120.00063 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0844 -0.8117 1.2001 5 7 3.4281 -1.2422 0.7726 6 6 4.4490 -1.5603 1.5929 7 8 4.2778 -1.5811 2.7978 8 6 5.7652 -1.8811 1.0342 9 6 6.0738 -2.0077 -0.3045 10 6 7.4333 -2.3229 -0.3856 11 17 8.3337 -2.5963 -1.8445 12 6 7.9253 -2.3736 0.8783 13 17 9.5701 -2.7247 1.3087 14 7 6.9200 -2.1101 1.7504 15 6 7.0419 -2.0750 3.2099 16 6 3.4679 -1.2731 -0.6967 17 6 2.0862 -0.8074 -1.2025 18 1 1.4483 -1.6631 -1.4240 19 7 2.2278 0.0502 -2.3817 20 6 2.3025 -0.5085 -3.6297 21 1 2.2565 -1.5814 -3.7447 22 6 2.4372 0.3041 -4.7470 23 7 2.5084 -0.2328 -5.9466 24 14 2.5174 2.1598 -4.5480 25 1 3.9320 2.5789 -4.3800 26 1 1.9477 2.8120 -5.7545 27 1 1.7360 2.5635 -3.3515 28 1 -0.3633 -1.0253 0.0696 29 1 -0.3633 0.5729 0.8531 30 1 -0.3633 0.4524 -0.9227 31 1 1.4538 -1.6784 1.3987 32 1 2.1524 -0.1801 2.0859 33 1 5.3920 -1.8902 -1.1337 34 1 6.9304 -3.0836 3.6082 35 1 8.0213 -1.6826 3.4834 36 1 6.2646 -1.4329 3.6240 37 1 4.2426 -0.5982 -1.0608 38 1 3.6659 -2.2881 -1.0410 39 1 2.2687 1.0138 -2.2785 40 1 2.6030 0.3351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054711287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:42 Heat of formation + Delta-G solvation = 31.090597 kcal Electronic energy + Delta-G solvation = -25950.297696 eV Core-core repulsion = 22046.720710 eV Total energy + Delta-G solvation = -3903.576986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77076 -39.68184 -37.70556 -36.99918 -36.47438 -34.39606 -33.36048 -32.43381 -31.13978 -29.50960 -28.15542 -26.76498 -26.25458 -24.16186 -22.55081 -21.14231 -20.97422 -20.24446 -19.43047 -17.61063 -17.46003 -16.58547 -16.34353 -16.00787 -15.46979 -14.68812 -14.49311 -14.33210 -14.18603 -13.86070 -13.52134 -13.32943 -13.29589 -13.09411 -12.73628 -12.60867 -12.47535 -12.25369 -12.03351 -11.78146 -11.59899 -11.52531 -11.49679 -11.15926 -10.94309 -10.74347 -10.73275 -10.39604 -10.12982 -10.02057 -9.67986 -9.06116 -8.92090 -8.65780 -8.31097 -7.44388 -5.87104 -3.25854 1.07709 1.24243 1.99269 2.10906 2.61156 3.18703 3.20401 3.31099 3.34124 3.40784 4.33590 4.49986 4.52024 4.79815 4.82284 4.92765 4.93840 4.97670 5.25826 5.34339 5.40402 5.47499 5.53395 5.57875 5.65021 5.68065 5.76692 5.98301 6.03272 6.09217 6.17482 6.25520 6.32074 6.39888 6.43217 6.55062 6.66779 7.48407 7.86045 8.04947 8.31121 9.07277 9.79521 9.96766 11.30263 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.003924 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.194330 B = 7133.761586 C = 9270.242205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.083 0.917 4 C 0.119 3.881 5 N -0.597 5.597 6 C 0.604 3.396 7 O -0.557 6.557 8 C -0.014 4.014 9 C -0.124 4.124 10 C -0.096 4.096 11 Cl -0.027 7.027 12 C 0.088 3.912 13 Cl -0.003 7.003 14 N -0.398 5.398 15 C 0.063 3.937 16 C 0.061 3.939 17 C 0.182 3.818 18 H 0.077 0.923 19 N -0.735 5.735 20 C -0.256 4.256 21 H 0.093 0.907 22 C 0.014 3.986 23 N -0.926 5.926 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.276 1.276 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.183 0.817 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.364 0.636 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -3.475 17.322 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.102 0.898 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.393 3.607 7 O -0.438 6.438 8 C -0.128 4.128 9 C -0.150 4.150 10 C -0.130 4.130 11 Cl 0.001 6.999 12 C -0.056 4.056 13 Cl 0.026 6.974 14 N -0.075 5.075 15 C -0.078 4.078 16 C -0.064 4.064 17 C 0.070 3.930 18 H 0.095 0.905 19 N -0.376 5.376 20 C -0.385 4.385 21 H 0.111 0.889 22 C -0.183 4.183 23 N -0.573 5.573 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.202 1.202 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.200 0.800 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.198 0.802 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.002 -3.692 18.061 20.096 hybrid contribution 0.655 1.218 -0.141 1.390 sum 8.656 -2.474 17.920 20.054 Atomic orbital electron populations 1.21629 0.93481 1.02008 1.02167 1.22723 0.96665 0.99661 0.94668 0.89840 1.22363 0.81806 0.98384 0.97776 1.48098 1.11503 1.65033 1.08183 1.16295 0.81816 0.77416 0.85171 1.90770 1.83794 1.55247 1.13982 1.19910 0.87780 1.14880 0.90228 1.22149 0.94238 1.02771 0.95810 1.19681 0.93426 1.13700 0.86242 1.98358 1.73711 1.95145 1.32645 1.20574 0.84244 1.12102 0.88639 1.98394 1.12188 1.93285 1.93546 1.43662 1.05846 1.50812 1.07142 1.22420 1.05126 1.05103 0.75115 1.23749 1.03390 1.02126 0.77180 1.21245 0.91725 0.93935 0.86069 0.90470 1.42708 1.88604 1.04036 1.02269 1.19047 1.43851 0.94018 0.81601 0.88874 1.24659 1.01275 0.97275 0.95102 1.69692 1.55887 1.34337 0.97355 0.86629 0.78004 0.87293 0.77050 1.20899 1.21657 1.20237 0.92401 0.92995 0.91331 0.90931 0.90591 0.80033 0.89876 0.89697 0.86841 0.89786 0.90860 0.80200 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.31 37.16 0.35 -1.26 16 2 C -0.12 -1.57 3.26 -88.35 -0.29 -1.86 16 3 H 0.08 1.15 8.00 -51.93 -0.42 0.74 16 4 C 0.12 1.51 6.36 -2.41 -0.02 1.50 16 5 N -0.60 -8.57 3.32 -171.96 -0.57 -9.14 16 6 C 0.60 9.15 7.80 -12.92 -0.10 9.05 16 7 O -0.56 -9.15 14.94 5.17 0.08 -9.07 16 8 C -0.01 -0.21 6.86 -81.94 -0.56 -0.77 16 9 C -0.12 -1.80 9.30 -39.10 -0.36 -2.16 16 10 C -0.10 -1.35 6.66 -39.90 -0.27 -1.61 16 11 Cl -0.03 -0.37 29.12 -51.86 -1.51 -1.88 16 12 C 0.09 1.13 7.39 -16.75 -0.12 1.00 16 13 Cl 0.00 -0.03 28.60 -51.86 -1.48 -1.51 16 14 N -0.40 -5.09 3.17 -116.65 -0.37 -5.46 16 15 C 0.06 0.61 10.43 59.84 0.62 1.24 16 16 C 0.06 0.93 4.73 -3.06 -0.01 0.91 16 17 C 0.18 2.98 3.05 -66.10 -0.20 2.78 16 18 H 0.08 1.29 8.02 -51.93 -0.42 0.88 16 19 N -0.73 -15.23 4.98 -51.65 -0.26 -15.48 16 20 C -0.26 -6.51 10.46 -15.06 -0.16 -6.67 16 21 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 22 C 0.01 0.38 5.50 -17.43 -0.10 0.28 16 23 N -0.93 -27.53 13.97 55.49 0.78 -26.76 16 24 Si 0.88 20.75 27.74 -169.99 -4.71 16.03 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.05 6.52 56.52 0.37 -5.69 16 28 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.85 7.99 -51.93 -0.41 0.44 16 32 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.18 2.68 4.42 -52.49 -0.23 2.45 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.65 7.90 -51.93 -0.41 0.24 16 36 H 0.11 1.23 6.19 -51.93 -0.32 0.91 16 37 H 0.08 1.38 6.64 -51.93 -0.34 1.03 16 38 H 0.07 1.10 7.08 -51.93 -0.37 0.73 16 39 H 0.36 7.55 5.57 -40.82 -0.23 7.32 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -29.74 356.48 -8.75 -38.49 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.85 Total: 6.97 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -1.22 Total: 2.43 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.42 Total: -56.84 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.03 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -2.99 Total: -3.39 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.74 -8.75 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054711287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.585 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds