Wall clock time and date at job start Wed Apr 1 2020 04:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.88252 * 2 1 4 4 C 1.55131 * 110.93667 * 124.07329 * 2 1 3 5 5 N 1.47429 * 104.71958 * 155.28881 * 4 2 1 6 6 C 1.34776 * 125.64950 * 155.81641 * 5 4 2 7 7 O 1.21724 * 119.99617 * 4.39177 * 6 5 4 8 8 C 1.46539 * 120.00477 * 184.39173 * 6 5 4 9 9 C 1.37963 * 126.21828 * 354.12173 * 8 6 5 10 10 C 1.39799 * 107.12641 * 180.20752 * 9 8 6 11 11 Cl 1.73598 * 126.06079 * 179.75856 * 10 9 8 12 12 C 1.35720 * 107.87406 * 359.59712 * 10 9 8 13 13 Cl 1.73601 * 125.58168 * 180.17293 * 12 10 9 14 14 N 1.35673 * 108.83178 * 0.40296 * 12 10 9 15 15 C 1.46492 * 125.69292 * 179.74539 * 14 12 10 16 16 C 1.47019 * 108.70456 * 335.55575 * 5 4 2 17 17 C 1.54330 * 107.27007 * 1.28654 * 16 5 4 18 18 H 1.09002 * 110.71404 * 263.65350 * 17 16 5 19 19 N 1.46497 * 110.72147 * 140.55837 * 17 16 5 20 20 C 1.36937 * 120.00094 * 86.44893 * 19 17 16 21 21 H 1.08001 * 120.00294 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00173 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00240 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99807 * 0.02562 * 22 20 19 25 25 H 1.48491 * 109.47063 * 89.99703 * 24 22 20 26 26 H 1.48505 * 109.46841 * 210.00119 * 24 22 20 27 27 H 1.48499 * 109.46825 * 329.99607 * 24 22 20 28 28 H 1.09000 * 109.47028 * 183.88401 * 1 2 3 29 29 H 1.08998 * 109.47212 * 303.88285 * 1 2 3 30 30 H 1.09000 * 109.47210 * 63.88436 * 1 2 3 31 31 H 1.09000 * 110.50122 * 36.45349 * 4 2 1 32 32 H 1.09000 * 110.34676 * 274.05154 * 4 2 1 33 33 H 1.07993 * 126.43776 * 359.93524 * 9 8 6 34 34 H 1.09004 * 109.47567 * 274.76076 * 15 14 12 35 35 H 1.08998 * 109.47594 * 34.76461 * 15 14 12 36 36 H 1.08997 * 109.46833 * 154.76211 * 15 14 12 37 37 H 1.09003 * 109.88355 * 120.69976 * 16 5 4 38 38 H 1.08995 * 109.88629 * 241.86751 * 16 5 4 39 39 H 0.96998 * 120.00165 * 266.45077 * 19 17 16 40 40 H 0.97003 * 120.00063 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0844 -0.8117 1.2001 5 7 3.4281 -1.2422 0.7726 6 6 4.4490 -1.5603 1.5929 7 8 4.2778 -1.5811 2.7978 8 6 5.7652 -1.8811 1.0342 9 6 6.0738 -2.0077 -0.3045 10 6 7.4333 -2.3229 -0.3856 11 17 8.3337 -2.5963 -1.8445 12 6 7.9253 -2.3736 0.8783 13 17 9.5701 -2.7247 1.3087 14 7 6.9200 -2.1101 1.7504 15 6 7.0419 -2.0750 3.2099 16 6 3.4679 -1.2731 -0.6967 17 6 2.0862 -0.8074 -1.2025 18 1 1.4483 -1.6631 -1.4240 19 7 2.2278 0.0502 -2.3817 20 6 2.3025 -0.5085 -3.6297 21 1 2.2565 -1.5814 -3.7447 22 6 2.4372 0.3041 -4.7470 23 7 2.5084 -0.2328 -5.9466 24 14 2.5174 2.1598 -4.5480 25 1 3.9320 2.5789 -4.3800 26 1 1.9477 2.8120 -5.7545 27 1 1.7360 2.5635 -3.3515 28 1 -0.3633 -1.0253 0.0696 29 1 -0.3633 0.5729 0.8531 30 1 -0.3633 0.4524 -0.9227 31 1 1.4538 -1.6784 1.3987 32 1 2.1524 -0.1801 2.0859 33 1 5.3920 -1.8902 -1.1337 34 1 6.9304 -3.0836 3.6082 35 1 8.0213 -1.6826 3.4834 36 1 6.2646 -1.4329 3.6240 37 1 4.2426 -0.5982 -1.0608 38 1 3.6659 -2.2881 -1.0410 39 1 2.2687 1.0138 -2.2785 40 1 2.6030 0.3351 -6.7273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054711287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:42 Heat of formation + Delta-G solvation = 13.856289 kcal Electronic energy + Delta-G solvation = -25951.045032 eV Core-core repulsion = 22046.720710 eV Total energy + Delta-G solvation = -3904.324322 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.82631 -40.85940 -38.95149 -37.94149 -37.55005 -36.00505 -34.54102 -33.62838 -32.86992 -30.58253 -29.59370 -27.68587 -27.29004 -25.77907 -23.91126 -22.26450 -22.19979 -21.54120 -20.50829 -19.47177 -18.53455 -17.76023 -17.47610 -17.07942 -16.71718 -16.27531 -15.71777 -15.51128 -15.40449 -14.97743 -14.83590 -14.79599 -14.45694 -14.17396 -14.06618 -13.82754 -13.52948 -13.34187 -13.06930 -13.00211 -12.91615 -12.89950 -12.53377 -12.48737 -12.17358 -12.13183 -11.93192 -11.88501 -11.75409 -11.43550 -11.22134 -10.90828 -9.97030 -9.82854 -9.37917 -9.31722 -7.96426 -5.31349 -0.00218 0.24661 0.96547 1.01823 1.43137 1.45628 1.51991 1.55094 2.03222 2.15581 2.53353 3.17462 3.33573 3.55623 3.62904 3.70398 3.80155 3.87732 4.15177 4.22486 4.28663 4.33178 4.39540 4.50519 4.57946 4.61543 4.69496 4.88969 4.89411 4.97153 5.10606 5.12856 5.18960 5.33127 5.36661 5.51562 5.56334 5.84022 6.25862 6.30113 6.87733 7.12437 7.86309 8.04248 9.24334 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.010579 B = 0.003924 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.194330 B = 7133.761586 C = 9270.242205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 H 0.084 0.916 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.604 3.396 7 O -0.569 6.569 8 C -0.027 4.027 9 C -0.131 4.131 10 C -0.114 4.114 11 Cl -0.030 7.030 12 C 0.096 3.904 13 Cl 0.021 6.979 14 N -0.395 5.395 15 C 0.058 3.942 16 C 0.074 3.926 17 C 0.174 3.826 18 H 0.074 0.926 19 N -0.736 5.736 20 C -0.227 4.227 21 H 0.065 0.935 22 C -0.055 4.055 23 N -0.980 5.980 24 Si 0.943 3.057 25 H -0.283 1.283 26 H -0.302 1.302 27 H -0.247 1.247 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.174 0.826 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.368 0.632 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.027 -2.777 20.073 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.125 4.125 3 H 0.102 0.898 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.394 3.606 7 O -0.451 6.451 8 C -0.141 4.141 9 C -0.157 4.157 10 C -0.149 4.149 11 Cl -0.001 7.001 12 C -0.049 4.049 13 Cl 0.050 6.950 14 N -0.071 5.071 15 C -0.081 4.081 16 C -0.051 4.051 17 C 0.064 3.936 18 H 0.092 0.908 19 N -0.378 5.378 20 C -0.358 4.358 21 H 0.083 0.917 22 C -0.246 4.246 23 N -0.630 5.630 24 Si 0.771 3.229 25 H -0.210 1.210 26 H -0.229 1.229 27 H -0.172 1.172 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.191 0.809 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.201 0.799 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.200 -2.997 20.904 22.654 hybrid contribution 0.648 0.874 -0.890 1.406 sum 8.848 -2.123 20.013 21.984 Atomic orbital electron populations 1.21614 0.92040 1.02919 1.02365 1.22650 0.97752 0.99143 0.92954 0.89803 1.22475 0.80982 0.98994 0.97605 1.48085 1.12159 1.64939 1.07507 1.16352 0.82052 0.77188 0.84994 1.90761 1.84052 1.55986 1.14348 1.19835 0.88142 1.15824 0.90341 1.22081 0.94561 1.03218 0.95852 1.19768 0.93458 1.14848 0.86796 1.98352 1.73638 1.95214 1.32896 1.20672 0.85218 1.10710 0.88334 1.98405 1.10277 1.93028 1.93337 1.43879 1.05223 1.49786 1.08200 1.22635 1.06161 1.05991 0.73281 1.23397 1.02008 1.01763 0.77979 1.21434 0.92435 0.93924 0.85822 0.90844 1.42642 1.88682 1.04596 1.01903 1.19004 1.40550 0.92827 0.83412 0.91670 1.25370 1.02602 1.01857 0.94819 1.69866 1.59025 1.35855 0.98278 0.85595 0.78060 0.81771 0.77475 1.20986 1.22894 1.17151 0.91553 0.90545 0.93017 0.89510 0.89546 0.80929 0.88449 0.87363 0.87721 0.90890 0.90940 0.79856 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.31 71.98 0.67 -2.09 16 2 C -0.11 -2.56 3.26 -9.32 -0.03 -2.59 16 3 H 0.08 2.09 8.00 -2.39 -0.02 2.07 16 4 C 0.12 2.76 6.36 86.93 0.55 3.31 16 5 N -0.60 -16.18 3.32 -816.17 -2.71 -18.90 16 6 C 0.60 17.45 7.80 86.41 0.67 18.12 16 7 O -0.57 -17.65 14.94 -4.43 -0.07 -17.72 16 8 C -0.03 -0.76 6.86 40.31 0.28 -0.48 16 9 C -0.13 -3.78 9.30 22.58 0.21 -3.57 16 10 C -0.11 -3.14 6.66 22.06 0.15 -3.00 16 11 Cl -0.03 -0.80 29.12 -2.72 -0.08 -0.88 16 12 C 0.10 2.31 7.39 83.52 0.62 2.92 16 13 Cl 0.02 0.40 28.60 -2.72 -0.08 0.32 16 14 N -0.40 -9.45 3.17 -522.96 -1.66 -11.11 16 15 C 0.06 1.01 10.43 127.77 1.33 2.34 16 16 C 0.07 2.21 4.73 86.73 0.41 2.62 16 17 C 0.17 5.50 3.05 46.18 0.14 5.65 16 18 H 0.07 2.41 8.02 -2.39 -0.02 2.39 16 19 N -0.74 -29.93 4.98 -317.33 -1.58 -31.51 16 20 C -0.23 -11.70 10.46 84.03 0.88 -10.82 16 21 H 0.07 3.68 8.06 -2.91 -0.02 3.66 16 22 C -0.05 -3.02 5.50 84.86 0.47 -2.55 16 23 N -0.98 -60.14 13.97 21.65 0.30 -59.83 16 24 Si 0.94 42.94 27.74 68.60 1.90 44.84 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 27 H -0.25 -9.92 6.52 99.48 0.65 -9.27 16 28 H 0.07 1.28 8.07 -2.39 -0.02 1.26 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.09 1.78 7.99 -2.39 -0.02 1.76 16 32 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 33 H 0.17 5.19 4.42 -2.91 -0.01 5.18 16 34 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.11 1.34 7.90 -2.39 -0.02 1.33 16 36 H 0.10 2.06 6.19 -2.39 -0.01 2.05 16 37 H 0.07 2.38 6.64 -2.39 -0.02 2.36 16 38 H 0.07 2.17 7.08 -2.39 -0.02 2.16 16 39 H 0.37 14.57 5.57 -92.71 -0.52 14.05 16 40 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -64.40 356.48 2.90 -61.51 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.52 Total: 23.41 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.35 Total: 9.86 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.65 Total: -121.35 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.07 Total: -17.72 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.90 Total: 44.84 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.16 Total: -0.56 kcal Total: -64.40 2.90 -61.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054711287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.362 kcal (2) G-P(sol) polarization free energy of solvation -64.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds