Wall clock time and date at job start Wed Apr 1 2020 03:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99741 * 2 1 4 4 H 1.48500 * 109.47119 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47080 * 300.00242 * 3 2 1 6 6 H 1.48500 * 109.47033 * 60.00427 * 3 2 1 7 7 C 1.38807 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00455 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00024 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00462 * 179.97438 * 9 7 2 11 11 H 1.09010 * 110.01371 * 33.61261 * 10 9 7 12 12 C 1.54263 * 110.03489 * 272.17133 * 10 9 7 13 13 C 1.54897 * 104.19440 * 264.32302 * 12 10 9 14 14 C 1.54894 * 102.74497 * 322.05395 * 13 12 10 15 15 H 1.08990 * 110.60070 * 279.21028 * 14 13 12 16 16 C 1.53005 * 110.48344 * 156.61910 * 14 13 12 17 17 N 1.46505 * 109.46904 * 70.22741 * 16 14 13 18 18 C 1.34777 * 119.99724 * 180.02562 * 17 16 14 19 19 O 1.21713 * 120.00188 * 359.97438 * 18 17 16 20 20 C 1.46548 * 119.99458 * 179.72463 * 18 17 16 21 21 C 1.37958 * 126.21984 * 179.97438 * 20 18 17 22 22 C 1.39786 * 107.13095 * 179.88172 * 21 20 18 23 23 Cl 1.73594 * 126.06585 * 180.14312 * 22 21 20 24 24 C 1.35723 * 107.87223 * 0.38603 * 22 21 20 25 25 Cl 1.73598 * 125.58707 * 179.72964 * 24 22 21 26 26 N 1.35670 * 108.83292 * 359.75666 * 24 22 21 27 27 H 0.96992 * 125.69511 * 180.02562 * 26 24 22 28 28 C 1.53877 * 110.03438 * 155.00001 * 10 9 7 29 29 H 0.96997 * 120.00382 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99764 * 0.02562 * 9 7 2 31 31 H 1.09001 * 110.48608 * 22.99774 * 12 10 9 32 32 H 1.09003 * 110.48642 * 145.51254 * 12 10 9 33 33 H 1.08999 * 110.75217 * 203.74339 * 13 12 10 34 34 H 1.08990 * 110.75421 * 80.37050 * 13 12 10 35 35 H 1.09003 * 109.46832 * 310.22994 * 16 14 13 36 36 H 1.08993 * 109.47355 * 190.22844 * 16 14 13 37 37 H 0.97000 * 119.99792 * 359.97438 * 17 16 14 38 38 H 1.08007 * 126.43633 * 359.97438 * 21 20 18 39 39 H 1.09000 * 110.03023 * 0.02562 * 28 10 9 40 40 H 1.09000 * 110.03119 * 238.57735 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 2.9839 -3.5535 0.5647 12 6 2.3689 -4.0863 -1.4503 13 6 1.2203 -5.0605 -1.8122 14 6 0.9996 -5.8351 -0.4892 15 1 1.7392 -6.6284 -0.3813 16 6 -0.4159 -6.4136 -0.4372 17 7 -0.5335 -7.5046 -1.4079 18 6 -1.6999 -8.1669 -1.5392 19 8 -2.6555 -7.8589 -0.8511 20 6 -1.8193 -9.2542 -2.5145 21 6 -2.9454 -10.0141 -2.7544 22 6 -2.6186 -10.9287 -3.7598 23 17 -3.6804 -12.1209 -4.4414 24 6 -1.3221 -10.7228 -4.1047 25 17 -0.4432 -11.6135 -5.3079 26 7 -0.8254 -9.7073 -3.3546 27 1 0.0784 -9.3583 -3.4020 28 6 1.1876 -4.7686 0.6095 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.3598 -3.2222 -2.1147 32 1 3.3322 -4.5940 -1.4994 33 1 1.5252 -5.7377 -2.6101 34 1 0.3218 -4.5111 -2.0927 35 1 -1.1367 -5.6326 -0.6792 36 1 -0.6160 -6.7951 0.5641 37 1 0.2279 -7.7497 -1.9566 38 1 -3.9008 -9.9192 -2.2595 39 1 0.2199 -4.3644 0.9065 40 1 1.6911 -5.2056 1.4718 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086770446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:08 Heat of formation + Delta-G solvation = -5.054342 kcal Electronic energy + Delta-G solvation = -24422.851739 eV Core-core repulsion = 20517.707391 eV Total energy + Delta-G solvation = -3905.144348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98864 -39.60985 -38.17137 -37.33232 -36.88067 -35.14376 -33.40976 -31.72538 -30.91047 -29.87919 -28.82108 -27.34064 -24.74935 -23.28707 -22.86217 -21.32960 -20.88906 -20.30843 -19.46127 -19.03255 -17.15245 -16.74222 -16.39424 -16.02664 -15.37284 -15.21430 -14.92723 -14.75535 -14.43928 -14.01322 -13.78288 -13.68858 -13.46876 -13.27457 -12.71733 -12.41417 -12.38497 -12.19317 -11.93802 -11.48113 -11.33143 -11.28021 -10.94384 -10.80208 -10.67665 -10.56996 -10.44576 -10.34662 -10.20324 -9.95098 -9.66358 -9.54290 -9.35158 -8.91881 -8.73861 -6.96800 -5.78897 -3.07503 0.71608 0.92742 1.64756 1.73519 2.59907 2.87984 2.93765 3.41045 3.46727 3.49043 4.27813 4.38424 4.56178 4.73668 4.84130 4.89698 4.98539 5.13887 5.44882 5.49742 5.60664 5.64840 5.69475 5.81539 5.89076 5.91274 5.96654 6.01806 6.10629 6.20373 6.26269 6.37708 6.39270 6.59123 6.66657 6.85122 7.03730 7.13110 7.69133 7.81159 8.40217 9.50998 10.09997 10.43723 11.43659 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.001829 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.900384 B =15307.009503 C =15726.117482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.175 3.825 11 H 0.049 0.951 12 C -0.146 4.146 13 C -0.113 4.113 14 C -0.104 4.104 15 H 0.074 0.926 16 C 0.126 3.874 17 N -0.722 5.722 18 C 0.587 3.413 19 O -0.515 6.515 20 C -0.013 4.013 21 C -0.087 4.087 22 C -0.098 4.098 23 Cl -0.027 7.027 24 C 0.097 3.903 25 Cl 0.005 6.995 26 N -0.522 5.522 27 H 0.428 0.572 28 C -0.121 4.121 29 H 0.255 0.745 30 H 0.383 0.617 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.393 0.607 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 -26.844 -9.012 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.187 4.187 13 C -0.151 4.151 14 C -0.123 4.123 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.373 5.373 18 C 0.372 3.628 19 O -0.390 6.390 20 C -0.127 4.127 21 C -0.113 4.113 22 C -0.133 4.133 23 Cl 0.002 6.998 24 C -0.047 4.047 25 Cl 0.034 6.966 26 N -0.124 5.124 27 H 0.267 0.733 28 C -0.160 4.160 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.227 0.773 38 H 0.187 0.813 39 H 0.092 0.908 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.426 -26.524 -8.601 27.920 hybrid contribution 1.085 0.768 -0.665 1.487 sum -0.341 -25.756 -9.266 27.374 Atomic orbital electron populations 1.69664 1.05081 1.25562 1.57686 1.24747 0.95507 0.97696 1.03066 0.86147 0.78764 0.84257 0.77187 1.20601 1.21921 1.21885 1.19290 0.91024 0.84195 1.42564 0.91177 1.42550 1.05664 0.99696 1.88255 1.20794 0.94168 0.86108 0.92538 0.93333 1.23127 0.95902 0.98637 1.01032 1.22512 1.00164 0.97429 0.94974 1.22256 0.94413 0.97888 0.97748 0.90735 1.21647 0.98002 0.88242 0.91769 1.45937 1.12981 1.36403 1.41973 1.16799 0.83497 0.80602 0.81862 1.90917 1.37545 1.65834 1.44749 1.20543 0.89331 1.02872 0.99983 1.21184 0.98872 0.93965 0.97267 1.19626 0.90316 1.00175 1.03220 1.98359 1.63524 1.54191 1.83756 1.20595 0.91910 0.95063 0.97120 1.98438 1.75458 1.71387 1.51361 1.41891 1.13579 1.26997 1.29889 0.73251 1.22472 1.01605 0.95346 0.96590 0.93543 0.78251 0.90911 0.93342 0.93224 0.91150 0.90371 0.91033 0.77319 0.81324 0.90752 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.48 9.96 -15.06 -0.15 -6.63 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -17.30 5.07 -52.34 -0.27 -17.56 16 10 C 0.17 3.22 3.55 -66.81 -0.24 2.98 16 11 H 0.05 0.93 8.09 -51.92 -0.42 0.51 16 12 C -0.15 -2.35 6.54 -25.07 -0.16 -2.51 16 13 C -0.11 -1.47 6.19 -24.73 -0.15 -1.62 16 14 C -0.10 -1.19 2.89 -88.96 -0.26 -1.45 16 15 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 16 C 0.13 1.44 4.96 -4.04 -0.02 1.42 16 17 N -0.72 -6.74 5.44 -61.65 -0.34 -7.08 16 18 C 0.59 6.62 7.78 -12.91 -0.10 6.52 16 19 O -0.52 -7.86 16.88 5.18 0.09 -7.77 16 20 C -0.01 -0.12 7.06 -81.93 -0.58 -0.70 16 21 C -0.09 -0.82 10.64 -39.11 -0.42 -1.23 16 22 C -0.10 -0.87 6.66 -39.90 -0.27 -1.14 16 23 Cl -0.03 -0.23 29.12 -51.86 -1.51 -1.74 16 24 C 0.10 0.75 7.75 -16.75 -0.13 0.62 16 25 Cl 0.01 0.03 29.13 -51.86 -1.51 -1.48 16 26 N -0.52 -3.47 6.01 -6.51 -0.04 -3.51 16 27 H 0.43 1.61 8.19 -40.82 -0.33 1.27 16 28 C -0.12 -1.79 6.14 -25.61 -0.16 -1.94 16 29 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.38 9.86 7.52 -40.82 -0.31 9.55 16 31 H 0.07 1.38 8.04 -51.93 -0.42 0.97 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 35 H 0.08 1.06 8.02 -51.93 -0.42 0.65 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.39 2.51 7.57 -40.82 -0.31 2.20 16 38 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.07 1.21 7.31 -51.93 -0.38 0.83 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -31.79 368.80 -10.12 -41.91 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -5.08 Total: 7.84 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.72 Total: -6.18 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.08 Total: -55.24 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -3.02 Total: -3.21 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.79 -10.12 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086770446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.853 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds