Wall clock time and date at job start Wed Apr 1 2020 04:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.87070 * 2 1 4 4 C 1.54313 * 109.88255 * 238.98476 * 2 1 3 5 5 H 1.08999 * 110.72089 * 336.92789 * 4 2 1 6 6 N 1.46501 * 110.72308 * 100.02433 * 4 2 1 7 7 C 1.34775 * 120.00237 * 204.99886 * 6 4 2 8 8 O 1.21714 * 119.99910 * 5.10687 * 7 6 4 9 9 C 1.46539 * 120.00196 * 185.10335 * 7 6 4 10 10 C 1.37961 * 126.21915 * 354.31830 * 9 7 6 11 11 C 1.39800 * 107.12695 * 179.97438 * 10 9 7 12 12 Cl 1.73602 * 126.06126 * 179.97438 * 11 10 9 13 13 C 1.35714 * 107.87382 * 0.22653 * 11 10 9 14 14 Cl 1.73602 * 125.58341 * 179.74760 * 13 11 10 15 15 N 1.35669 * 108.83303 * 359.63108 * 13 11 10 16 16 C 1.46495 * 125.69363 * 180.18300 * 15 13 11 17 17 C 1.55160 * 102.94508 * 218.39123 * 4 2 1 18 18 C 1.54908 * 101.57950 * 35.49798 * 17 4 2 19 19 N 1.47022 * 109.88172 * 121.17461 * 2 1 3 20 20 C 1.36941 * 125.65097 * 298.32296 * 19 2 1 21 21 H 1.08009 * 119.99700 * 359.97438 * 20 19 2 22 22 C 1.38804 * 120.00326 * 180.02562 * 20 19 2 23 23 N 1.31619 * 119.99665 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00137 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47154 * 90.00210 * 24 22 20 26 26 H 1.48500 * 109.47123 * 210.00046 * 24 22 20 27 27 H 1.48498 * 109.47193 * 329.99852 * 24 22 20 28 28 H 1.08994 * 109.47155 * 181.01812 * 1 2 3 29 29 H 1.09001 * 109.47380 * 301.01656 * 1 2 3 30 30 H 1.08998 * 109.47254 * 61.01585 * 1 2 3 31 31 H 0.96998 * 119.99695 * 25.00191 * 6 4 2 32 32 H 1.07999 * 126.44283 * 359.95943 * 10 9 7 33 33 H 1.08997 * 109.47214 * 274.25188 * 16 15 13 34 34 H 1.09003 * 109.47731 * 34.25252 * 16 15 13 35 35 H 1.09002 * 109.46852 * 154.25371 * 16 15 13 36 36 H 1.08994 * 111.01056 * 153.57411 * 17 4 2 37 37 H 1.09003 * 110.99879 * 277.43031 * 17 4 2 38 38 H 1.08997 * 110.36932 * 204.15471 * 18 17 4 39 39 H 1.09005 * 110.45668 * 81.87674 * 18 17 4 40 40 H 0.97010 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 1 1.3040 -1.4414 -1.6220 6 7 2.4554 0.1993 -2.2872 7 6 2.4581 -0.1833 -3.5795 8 8 2.0400 -1.2836 -3.8893 9 6 2.9644 0.7254 -4.6117 10 6 3.3633 2.0324 -4.4226 11 6 3.7721 2.5221 -5.6666 12 17 4.3685 4.1201 -5.9900 13 6 3.6148 1.5285 -6.5775 14 17 3.9784 1.6439 -8.2711 15 7 3.1292 0.4296 -5.9474 16 6 2.8263 -0.8556 -6.5820 17 6 3.2876 -1.5133 -0.6945 18 6 2.8145 -1.8804 0.7342 19 7 2.0300 -0.7157 1.1829 20 6 1.8050 -0.3591 2.4858 21 1 1.2148 0.5169 2.7117 22 6 2.3361 -1.1227 3.5161 23 7 3.0557 -2.1898 3.2408 24 14 2.0297 -0.6358 5.2933 25 1 0.7897 -1.2921 5.7796 26 1 3.1786 -1.0667 6.1297 27 1 1.8774 0.8387 5.3834 28 1 -0.3633 -1.0274 0.0183 29 1 -0.3634 0.5295 0.8807 30 1 -0.3634 0.4980 -0.8989 31 1 2.7187 1.1017 -2.0480 32 1 3.3601 2.5755 -3.4891 33 1 1.8165 -0.8296 -6.9916 34 1 3.5394 -1.0414 -7.3852 35 1 2.8976 -1.6522 -5.8414 36 1 3.4852 -2.4092 -1.2829 37 1 4.1654 -0.8679 -0.6615 38 1 3.6716 -2.0357 1.3895 39 1 2.1890 -2.7728 0.7108 40 1 3.4266 -2.7237 3.9608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088606280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:24 Heat of formation + Delta-G solvation = 29.581886 kcal Electronic energy + Delta-G solvation = -25491.719485 eV Core-core repulsion = 21588.077076 eV Total energy + Delta-G solvation = -3903.642409 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.87896 -39.46145 -37.58345 -37.12243 -36.73779 -34.38403 -33.14585 -32.07710 -30.46639 -29.75952 -28.36347 -26.92136 -25.02062 -24.04366 -22.78582 -21.24264 -20.32345 -20.23755 -19.52470 -18.18885 -16.86862 -16.46587 -16.28789 -15.99443 -14.98682 -14.71486 -14.58254 -14.42750 -13.96625 -13.91693 -13.71894 -13.44996 -13.39268 -12.87147 -12.60329 -12.22801 -12.18485 -12.05257 -11.76651 -11.69310 -11.60969 -11.21569 -11.18305 -10.89829 -10.86645 -10.64847 -10.50788 -10.12779 -9.96465 -9.80786 -9.61369 -9.13596 -8.86408 -8.68763 -8.48311 -6.91827 -5.69143 -3.12107 0.95499 1.11226 1.76975 1.90173 2.54412 3.14856 3.28172 3.37921 3.43352 3.44899 4.36807 4.43949 4.51315 4.68401 4.89710 5.09449 5.19424 5.28832 5.37596 5.39613 5.47690 5.56418 5.74931 5.85959 6.07238 6.16235 6.21992 6.24451 6.28385 6.36921 6.44457 6.54434 6.63561 6.81031 7.03505 7.45201 7.53848 7.58945 7.80911 8.13426 8.31134 9.16852 9.77751 10.40804 11.34286 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.002390 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.683280 B =11712.207674 C =12413.519170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.038 0.962 4 C 0.135 3.865 5 H 0.098 0.902 6 N -0.697 5.697 7 C 0.589 3.411 8 O -0.544 6.544 9 C -0.008 4.008 10 C -0.123 4.123 11 C -0.096 4.096 12 Cl -0.032 7.032 13 C 0.087 3.913 14 Cl 0.000 7.000 15 N -0.394 5.394 16 C 0.060 3.940 17 C -0.153 4.153 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.038 0.962 31 H 0.402 0.598 32 H 0.165 0.835 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.015 0.985 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.826 7.782 -21.808 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.055 0.945 4 C 0.031 3.969 5 H 0.116 0.884 6 N -0.346 5.346 7 C 0.375 3.625 8 O -0.423 6.423 9 C -0.123 4.123 10 C -0.149 4.149 11 C -0.130 4.130 12 Cl -0.003 7.003 13 C -0.057 4.057 14 Cl 0.028 6.972 15 N -0.069 5.069 16 C -0.080 4.080 17 C -0.193 4.193 18 C 0.028 3.972 19 N -0.320 5.320 20 C -0.349 4.349 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.237 0.763 32 H 0.182 0.818 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.033 0.967 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.592 6.685 -22.105 23.149 hybrid contribution -0.008 0.801 0.658 1.037 sum 1.584 7.486 -21.447 22.771 Atomic orbital electron populations 1.22247 0.97777 1.01487 1.00022 1.20987 0.92690 0.94842 0.86760 0.94494 1.22272 0.97932 0.90621 0.86037 0.88386 1.45739 1.67202 1.16608 1.05075 1.16679 0.78464 0.85359 0.81978 1.90801 1.47856 1.21984 1.81684 1.20175 1.12429 0.95845 0.83874 1.21228 1.03188 0.92888 0.97586 1.19545 1.11736 0.88341 0.93400 1.98348 1.86694 1.19768 1.95506 1.20565 1.09666 0.88832 0.86590 1.98404 1.92924 1.97361 1.08482 1.43751 1.46208 1.10547 1.06440 1.22491 1.02713 0.82570 1.00239 1.23427 0.96711 0.99280 0.99898 1.21954 0.97457 0.88430 0.89380 1.44478 1.59257 1.28200 1.00054 1.19019 1.27207 1.08214 0.80433 0.90408 1.24784 1.00293 0.97379 0.98081 1.69788 1.39076 1.17836 1.30237 0.86080 0.77248 0.77755 0.84439 1.21645 1.21671 1.20683 0.92898 0.92629 0.94275 0.76272 0.81755 0.89647 0.89539 0.86529 0.91993 0.91745 0.87244 0.96688 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.13 37.16 0.34 -2.43 16 2 C 0.16 2.96 3.48 -66.96 -0.23 2.72 16 3 H 0.04 0.68 7.71 -51.93 -0.40 0.28 16 4 C 0.14 2.30 2.89 -66.10 -0.19 2.11 16 5 H 0.10 1.79 7.19 -51.93 -0.37 1.41 16 6 N -0.70 -9.53 5.16 -53.38 -0.28 -9.80 16 7 C 0.59 8.25 7.76 -12.92 -0.10 8.15 16 8 O -0.54 -8.98 14.28 5.18 0.07 -8.91 16 9 C -0.01 -0.10 6.89 -81.94 -0.56 -0.66 16 10 C -0.12 -1.29 10.34 -39.10 -0.40 -1.70 16 11 C -0.10 -1.03 6.66 -39.90 -0.27 -1.29 16 12 Cl -0.03 -0.31 29.12 -51.86 -1.51 -1.82 16 13 C 0.09 0.92 7.39 -16.76 -0.12 0.80 16 14 Cl 0.00 0.00 28.59 -51.86 -1.48 -1.48 16 15 N -0.39 -4.32 3.17 -116.65 -0.37 -4.69 16 16 C 0.06 0.53 10.42 59.84 0.62 1.15 16 17 C -0.15 -2.86 6.77 -24.58 -0.17 -3.03 16 18 C 0.15 3.57 5.89 -2.53 -0.01 3.56 16 19 N -0.59 -14.24 3.13 -162.58 -0.51 -14.75 16 20 C -0.22 -5.82 9.89 -15.06 -0.15 -5.97 16 21 H 0.08 1.99 7.83 -52.48 -0.41 1.58 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.06 10.09 55.49 0.56 -25.50 16 24 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 4.57 7.26 -40.82 -0.30 4.27 16 32 H 0.16 1.36 7.45 -52.49 -0.39 0.97 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.58 7.89 -51.93 -0.41 0.17 16 35 H 0.12 1.20 6.23 -51.93 -0.32 0.88 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 360.04 15.07 5.43 5.43 Total: -1.00 -29.79 360.04 -9.46 -39.25 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.00 Total: 2.79 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.35 Total: 3.04 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.59 Total: -54.74 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.07 Total: -8.91 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -2.99 Total: -3.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.79 -9.46 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088606280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.831 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds