Wall clock time and date at job start Wed Apr 1 2020 04:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.87070 * 2 1 4 4 C 1.54313 * 109.88255 * 238.98476 * 2 1 3 5 5 H 1.08999 * 110.72089 * 336.92789 * 4 2 1 6 6 N 1.46501 * 110.72308 * 100.02433 * 4 2 1 7 7 C 1.34775 * 120.00237 * 204.99886 * 6 4 2 8 8 O 1.21714 * 119.99910 * 5.10687 * 7 6 4 9 9 C 1.46539 * 120.00196 * 185.10335 * 7 6 4 10 10 C 1.37961 * 126.21915 * 354.31830 * 9 7 6 11 11 C 1.39800 * 107.12695 * 179.97438 * 10 9 7 12 12 Cl 1.73602 * 126.06126 * 179.97438 * 11 10 9 13 13 C 1.35714 * 107.87382 * 0.22653 * 11 10 9 14 14 Cl 1.73602 * 125.58341 * 179.74760 * 13 11 10 15 15 N 1.35669 * 108.83303 * 359.63108 * 13 11 10 16 16 C 1.46495 * 125.69363 * 180.18300 * 15 13 11 17 17 C 1.55160 * 102.94508 * 218.39123 * 4 2 1 18 18 C 1.54908 * 101.57950 * 35.49798 * 17 4 2 19 19 N 1.47022 * 109.88172 * 121.17461 * 2 1 3 20 20 C 1.36941 * 125.65097 * 298.32296 * 19 2 1 21 21 H 1.08009 * 119.99700 * 359.97438 * 20 19 2 22 22 C 1.38804 * 120.00326 * 180.02562 * 20 19 2 23 23 N 1.31619 * 119.99665 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00137 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47154 * 90.00210 * 24 22 20 26 26 H 1.48500 * 109.47123 * 210.00046 * 24 22 20 27 27 H 1.48498 * 109.47193 * 329.99852 * 24 22 20 28 28 H 1.08994 * 109.47155 * 181.01812 * 1 2 3 29 29 H 1.09001 * 109.47380 * 301.01656 * 1 2 3 30 30 H 1.08998 * 109.47254 * 61.01585 * 1 2 3 31 31 H 0.96998 * 119.99695 * 25.00191 * 6 4 2 32 32 H 1.07999 * 126.44283 * 359.95943 * 10 9 7 33 33 H 1.08997 * 109.47214 * 274.25188 * 16 15 13 34 34 H 1.09003 * 109.47731 * 34.25252 * 16 15 13 35 35 H 1.09002 * 109.46852 * 154.25371 * 16 15 13 36 36 H 1.08994 * 111.01056 * 153.57411 * 17 4 2 37 37 H 1.09003 * 110.99879 * 277.43031 * 17 4 2 38 38 H 1.08997 * 110.36932 * 204.15471 * 18 17 4 39 39 H 1.09005 * 110.45668 * 81.87674 * 18 17 4 40 40 H 0.97010 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 1 1.3040 -1.4414 -1.6220 6 7 2.4554 0.1993 -2.2872 7 6 2.4581 -0.1833 -3.5795 8 8 2.0400 -1.2836 -3.8893 9 6 2.9644 0.7254 -4.6117 10 6 3.3633 2.0324 -4.4226 11 6 3.7721 2.5221 -5.6666 12 17 4.3685 4.1201 -5.9900 13 6 3.6148 1.5285 -6.5775 14 17 3.9784 1.6439 -8.2711 15 7 3.1292 0.4296 -5.9474 16 6 2.8263 -0.8556 -6.5820 17 6 3.2876 -1.5133 -0.6945 18 6 2.8145 -1.8804 0.7342 19 7 2.0300 -0.7157 1.1829 20 6 1.8050 -0.3591 2.4858 21 1 1.2148 0.5169 2.7117 22 6 2.3361 -1.1227 3.5161 23 7 3.0557 -2.1898 3.2408 24 14 2.0297 -0.6358 5.2933 25 1 0.7897 -1.2921 5.7796 26 1 3.1786 -1.0667 6.1297 27 1 1.8774 0.8387 5.3834 28 1 -0.3633 -1.0274 0.0183 29 1 -0.3634 0.5295 0.8807 30 1 -0.3634 0.4980 -0.8989 31 1 2.7187 1.1017 -2.0480 32 1 3.3601 2.5755 -3.4891 33 1 1.8165 -0.8296 -6.9916 34 1 3.5394 -1.0414 -7.3852 35 1 2.8976 -1.6522 -5.8414 36 1 3.4852 -2.4092 -1.2829 37 1 4.1654 -0.8679 -0.6615 38 1 3.6716 -2.0357 1.3895 39 1 2.1890 -2.7728 0.7108 40 1 3.4266 -2.7237 3.9608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088606280.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:23 Heat of formation + Delta-G solvation = 12.688998 kcal Electronic energy + Delta-G solvation = -25492.452016 eV Core-core repulsion = 21588.077076 eV Total energy + Delta-G solvation = -3904.374939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.72882 -40.70195 -39.05089 -37.88894 -37.51641 -35.75784 -34.25891 -33.57589 -32.04928 -31.04374 -29.81868 -27.66070 -26.56159 -25.81239 -23.89546 -22.22440 -21.85949 -21.53998 -20.74068 -19.15133 -18.68600 -17.62151 -17.22066 -17.11357 -16.65665 -15.88146 -15.74638 -15.63928 -15.40832 -15.07458 -14.79334 -14.50075 -14.33833 -14.13737 -13.98129 -13.70258 -13.36489 -13.19669 -12.95384 -12.90385 -12.74273 -12.58222 -12.50718 -12.44324 -12.23321 -12.12401 -11.96959 -11.94827 -11.54917 -11.41754 -11.13701 -10.70465 -10.13080 -9.92018 -9.35390 -8.86774 -7.72301 -5.16754 0.06567 0.32175 0.99407 1.07305 1.50789 1.51721 1.59986 1.65808 2.12869 2.25930 2.54745 3.38423 3.45406 3.62698 3.71275 3.86315 3.90655 3.96579 4.23859 4.24426 4.34671 4.53711 4.53806 4.60270 4.65499 4.71465 4.83446 4.95578 5.06149 5.07715 5.14584 5.36749 5.41625 5.53525 5.56620 5.61527 5.63947 5.83828 6.34077 6.44119 7.06017 7.14455 7.82241 8.44975 9.29492 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.002390 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.683280 B =11712.207674 C =12413.519170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.150 3.850 3 H 0.055 0.945 4 C 0.156 3.844 5 H 0.088 0.912 6 N -0.688 5.688 7 C 0.594 3.406 8 O -0.572 6.572 9 C -0.030 4.030 10 C -0.109 4.109 11 C -0.110 4.110 12 Cl -0.025 7.025 13 C 0.090 3.910 14 Cl 0.015 6.985 15 N -0.397 5.397 16 C 0.057 3.943 17 C -0.138 4.138 18 C 0.157 3.843 19 N -0.613 5.613 20 C -0.224 4.224 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.976 3.024 25 H -0.291 1.291 26 H -0.297 1.297 27 H -0.267 1.267 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.416 0.584 32 H 0.186 0.814 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.077 0.923 39 H -0.014 1.014 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 9.851 -23.352 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.073 0.927 4 C 0.050 3.950 5 H 0.106 0.894 6 N -0.338 5.338 7 C 0.382 3.618 8 O -0.453 6.453 9 C -0.144 4.144 10 C -0.135 4.135 11 C -0.144 4.144 12 Cl 0.004 6.996 13 C -0.055 4.055 14 Cl 0.044 6.956 15 N -0.073 5.073 16 C -0.082 4.082 17 C -0.178 4.178 18 C 0.031 3.969 19 N -0.339 5.339 20 C -0.353 4.353 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.219 1.219 26 H -0.224 1.224 27 H -0.192 1.192 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.254 0.746 32 H 0.203 0.797 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.004 0.996 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.445 8.802 -23.681 25.305 hybrid contribution 0.037 0.200 1.000 1.021 sum 1.482 9.001 -22.681 24.447 Atomic orbital electron populations 1.22135 0.96590 1.00748 1.01208 1.21199 0.93493 0.95232 0.85719 0.92733 1.21793 0.96525 0.90596 0.86074 0.89417 1.45457 1.67296 1.16669 1.04412 1.16856 0.77676 0.85155 0.82121 1.90796 1.49063 1.23343 1.82109 1.19856 1.14443 0.96094 0.84015 1.21513 1.01404 0.92209 0.98401 1.19681 1.12269 0.88832 0.93619 1.98351 1.86616 1.19203 1.95472 1.20765 1.08685 0.88629 0.87392 1.98413 1.92734 1.97298 1.07179 1.43903 1.45957 1.11143 1.06268 1.22589 1.03996 0.81406 1.00211 1.23220 0.97623 1.00049 0.96910 1.21671 0.95735 0.87805 0.91652 1.44711 1.59739 1.28601 1.00815 1.19380 1.26167 1.07982 0.81742 0.89684 1.25570 1.00922 0.97810 1.01775 1.70037 1.40443 1.18962 1.30647 0.85109 0.76419 0.78028 0.79974 1.21867 1.22394 1.19171 0.94534 0.93412 0.91114 0.74621 0.79656 0.88667 0.87485 0.88107 0.91284 0.90893 0.90510 0.99626 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.13 71.98 0.66 -4.37 16 2 C 0.15 5.51 3.48 45.34 0.16 5.67 16 3 H 0.06 1.85 7.71 -2.39 -0.02 1.83 16 4 C 0.16 5.09 2.89 46.18 0.13 5.22 16 5 H 0.09 3.12 7.19 -2.39 -0.02 3.11 16 6 N -0.69 -17.30 5.16 -441.01 -2.28 -19.57 16 7 C 0.59 15.61 7.76 86.41 0.67 16.28 16 8 O -0.57 -18.34 14.28 -4.39 -0.06 -18.41 16 9 C -0.03 -0.65 6.89 40.30 0.28 -0.37 16 10 C -0.11 -2.00 10.34 22.58 0.23 -1.77 16 11 C -0.11 -2.08 6.66 22.06 0.15 -1.94 16 12 Cl -0.03 -0.44 29.12 -2.72 -0.08 -0.52 16 13 C 0.09 1.70 7.39 83.51 0.62 2.32 16 14 Cl 0.02 0.23 28.59 -2.72 -0.08 0.16 16 15 N -0.40 -7.95 3.17 -522.95 -1.66 -9.61 16 16 C 0.06 0.93 10.42 127.77 1.33 2.26 16 17 C -0.14 -5.11 6.77 31.99 0.22 -4.89 16 18 C 0.16 7.55 5.89 86.85 0.51 8.06 16 19 N -0.61 -29.49 3.13 -668.27 -2.09 -31.57 16 20 C -0.22 -11.83 9.89 84.03 0.83 -11.00 16 21 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 22 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 23 N -0.95 -55.54 10.09 21.65 0.22 -55.33 16 24 Si 0.98 44.56 29.55 68.60 2.03 46.59 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.68 8.04 -2.39 -0.02 1.66 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.42 8.20 7.26 -92.71 -0.67 7.52 16 32 H 0.19 2.44 7.45 -2.91 -0.02 2.41 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.11 1.23 7.89 -2.39 -0.02 1.21 16 35 H 0.10 2.01 6.23 -2.39 -0.01 1.99 16 36 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.08 4.23 5.87 -2.39 -0.01 4.21 16 39 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 40 H 0.25 14.03 8.31 -92.70 -0.77 13.26 16 Total: -1.00 -64.89 360.04 2.67 -62.22 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.41 Total: 13.87 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.25 Total: 12.17 kcal Atomic # 7 Polarization: -110.28 SS G_CDS: -5.80 Total: -116.08 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.06 Total: -18.41 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.16 Total: -0.36 kcal Total: -64.89 2.67 -62.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088606280.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.910 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds