Wall clock time and date at job start Wed Apr 1 2020 04:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.64278 * 2 1 4 4 C 1.54321 * 110.71941 * 236.66580 * 2 1 3 5 5 N 1.47023 * 107.27432 * 219.44552 * 4 2 1 6 6 C 1.36936 * 125.65363 * 178.92335 * 5 4 2 7 7 H 1.07997 * 120.00461 * 180.02562 * 6 5 4 8 8 C 1.38812 * 119.99481 * 0.02562 * 6 5 4 9 9 N 1.31614 * 120.00208 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99775 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47137 * 59.99285 * 10 8 6 12 12 H 1.48495 * 109.47205 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.46987 * 299.99702 * 10 8 6 14 14 C 1.47423 * 108.70006 * 358.93845 * 5 4 2 15 15 C 1.54911 * 104.83461 * 24.13192 * 14 5 4 16 16 H 1.08998 * 111.03386 * 81.07612 * 15 14 5 17 17 C 1.52998 * 111.00529 * 204.91520 * 15 14 5 18 18 N 1.46495 * 109.47205 * 287.19257 * 17 15 14 19 19 C 1.34780 * 120.00241 * 179.97438 * 18 17 15 20 20 O 1.21719 * 119.99771 * 0.02562 * 19 18 17 21 21 C 1.46536 * 120.00356 * 180.02562 * 19 18 17 22 22 C 1.37958 * 126.22374 * 179.97438 * 21 19 18 23 23 C 1.39798 * 107.12826 * 179.74148 * 22 21 19 24 24 Cl 1.73602 * 126.06253 * 180.28803 * 23 22 21 25 25 C 1.35721 * 107.87459 * 0.26326 * 23 22 21 26 26 Cl 1.73597 * 125.58422 * 180.02562 * 25 23 22 27 27 N 1.35661 * 108.82957 * 0.02562 * 25 23 22 28 28 H 0.97001 * 125.69414 * 179.97438 * 27 25 23 29 29 H 1.09006 * 109.47080 * 296.85272 * 1 2 3 30 30 H 1.08992 * 109.47396 * 56.85831 * 1 2 3 31 31 H 1.09004 * 109.46739 * 176.85728 * 1 2 3 32 32 H 1.08998 * 109.88592 * 338.86186 * 4 2 1 33 33 H 1.08995 * 109.88420 * 99.87240 * 4 2 1 34 34 H 0.97007 * 119.99983 * 179.97438 * 9 8 6 35 35 H 1.09006 * 110.36864 * 265.29310 * 14 5 4 36 36 H 1.08999 * 110.37093 * 142.97066 * 14 5 4 37 37 H 1.09003 * 109.46874 * 167.19530 * 17 15 14 38 38 H 1.08997 * 109.47200 * 47.19912 * 17 15 14 39 39 H 0.96999 * 119.99951 * 0.02562 * 18 17 15 40 40 H 1.08002 * 126.43880 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7932 -1.2059 5 7 3.2445 -1.5520 -0.7365 6 6 4.0036 -2.4003 -1.4975 7 1 4.8456 -2.9136 -1.0572 8 6 3.6909 -2.6004 -2.8351 9 7 2.6645 -1.9752 -3.3716 10 14 4.7261 -3.7581 -3.8732 11 1 4.6826 -5.1217 -3.2866 12 1 4.1879 -3.7975 -5.2567 13 1 6.1304 -3.2760 -3.9014 14 6 3.4633 -1.2487 0.6895 15 6 2.0790 -0.7935 1.2151 16 1 1.4449 -1.6509 1.4406 17 6 2.2278 0.1120 2.4394 18 7 2.6329 -0.6921 3.5951 19 6 2.8260 -0.1027 4.7917 20 8 2.6635 1.0975 4.9122 21 6 3.2317 -0.9069 5.9476 22 6 3.4642 -0.4396 7.2246 23 6 3.8213 -1.5413 8.0075 24 17 4.2126 -1.5095 9.6986 25 6 3.8074 -2.6403 7.2112 26 17 4.1801 -4.2587 7.7166 27 7 3.4545 -2.2668 5.9557 28 1 3.3690 -2.8588 5.1921 29 1 -0.3633 0.4642 0.9169 30 1 -0.3634 0.5618 -0.8604 31 1 -0.3633 -1.0262 -0.0563 32 1 1.3130 -1.4784 -1.5751 33 1 2.3715 -0.1059 -1.9986 34 1 2.4462 -2.1147 -4.3065 35 1 4.1932 -0.4465 0.7991 36 1 3.7960 -2.1406 1.2204 37 1 1.2748 0.5972 2.6504 38 1 2.9854 0.8701 2.2407 39 1 2.7627 -1.6485 3.4989 40 1 3.3810 0.5843 7.5581 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092864836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:26 Heat of formation + Delta-G solvation = 13.700441 kcal Electronic energy + Delta-G solvation = -24910.676120 eV Core-core repulsion = 21006.345040 eV Total energy + Delta-G solvation = -3904.331080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90198 -39.50683 -38.05285 -37.23966 -36.81733 -34.93184 -33.07232 -31.61394 -30.81746 -30.27185 -28.82256 -26.08648 -25.29339 -23.55873 -22.49053 -21.24586 -20.80750 -20.21982 -19.78494 -18.94304 -16.95248 -16.57387 -16.17238 -15.93164 -15.25238 -15.07041 -14.81029 -14.40313 -14.17529 -13.85882 -13.76391 -13.65960 -13.30378 -13.00680 -12.60578 -12.31837 -12.22879 -11.90634 -11.84612 -11.77365 -11.49203 -11.30262 -11.26845 -10.87827 -10.84179 -10.52162 -10.20342 -10.09696 -10.00455 -9.82932 -9.64723 -9.46589 -9.24314 -8.66579 -8.65464 -6.90712 -5.77737 -3.11813 0.80324 1.02173 1.71660 1.80871 2.69748 2.98628 3.01432 3.35169 3.39821 3.41135 4.37074 4.42465 4.47573 4.90210 5.00965 5.09102 5.20349 5.22174 5.44952 5.48188 5.64547 5.72527 5.78999 5.91739 5.97032 5.97328 6.08894 6.17011 6.21024 6.40306 6.45207 6.47235 6.54664 6.66376 6.83674 7.23501 7.49360 7.57011 7.77110 7.89379 8.19239 9.15212 9.75464 10.41097 11.33643 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.002345 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.680785 B =11937.719573 C =13430.295085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.183 3.817 5 N -0.606 5.606 6 C -0.232 4.232 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.921 5.921 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.142 3.858 15 C -0.114 4.114 16 H 0.080 0.920 17 C 0.132 3.868 18 N -0.720 5.720 19 C 0.588 3.412 20 O -0.521 6.521 21 C -0.013 4.013 22 C -0.088 4.088 23 C -0.100 4.100 24 Cl -0.028 7.028 25 C 0.099 3.901 26 Cl 0.005 6.995 27 N -0.521 5.521 28 H 0.429 0.571 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.020 0.980 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.396 0.604 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 -0.466 22.289 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.087 0.913 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.360 4.360 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.568 5.568 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.215 1.215 13 H -0.211 1.211 14 C 0.015 3.985 15 C -0.134 4.134 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.371 5.371 19 C 0.373 3.627 20 O -0.396 6.396 21 C -0.127 4.127 22 C -0.114 4.114 23 C -0.134 4.134 24 Cl 0.000 7.000 25 C -0.046 4.046 26 Cl 0.034 6.966 27 N -0.122 5.122 28 H 0.269 0.731 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.229 0.771 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.256 0.126 22.120 22.156 hybrid contribution 0.695 -1.711 -0.874 2.043 sum -0.561 -1.585 21.246 21.313 Atomic orbital electron populations 1.21701 0.95228 1.01645 1.00658 1.22442 0.95218 0.99158 0.96133 0.91285 1.21226 0.89078 0.93098 0.90741 1.44442 1.32635 1.51458 1.04647 1.18984 1.07753 1.17873 0.91408 0.90586 1.24804 0.98373 1.00242 0.96896 1.69945 1.28647 1.45416 1.12772 0.86208 0.79521 0.80468 0.79590 1.21191 1.21543 1.21142 1.21585 0.92947 0.96923 0.87014 1.22703 0.99513 0.98083 0.93128 0.90148 1.21507 1.00579 0.93742 0.83216 1.45978 1.69705 1.11953 1.09439 1.16793 0.77797 0.86776 0.81289 1.90891 1.51510 1.13294 1.83953 1.20540 1.13671 0.81513 0.96972 1.21154 1.01478 0.99187 0.89587 1.19612 1.13541 0.92649 0.87641 1.98354 1.92830 1.98590 1.10209 1.20598 1.09786 0.88219 0.85993 1.98438 1.92644 1.16665 1.88879 1.41935 1.52761 1.08394 1.09149 0.73061 0.93617 0.92669 0.92725 0.93270 0.93963 0.93632 0.96253 0.94883 0.91062 0.90807 0.77053 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.16 37.16 0.34 -1.62 16 2 C -0.11 -1.86 3.02 -88.78 -0.27 -2.13 16 3 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 4 C 0.18 4.21 4.97 -3.06 -0.02 4.19 16 5 N -0.61 -14.69 3.39 -170.08 -0.58 -15.27 16 6 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 7 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -26.36 10.31 55.49 0.57 -25.79 16 10 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.14 2.65 6.65 -2.53 -0.02 2.63 16 15 C -0.11 -1.72 2.50 -88.47 -0.22 -1.94 16 16 H 0.08 1.18 8.05 -51.93 -0.42 0.77 16 17 C 0.13 1.70 5.13 -4.05 -0.02 1.68 16 18 N -0.72 -7.90 5.50 -61.66 -0.34 -8.24 16 19 C 0.59 7.14 7.78 -12.91 -0.10 7.03 16 20 O -0.52 -8.08 16.88 5.17 0.09 -7.99 16 21 C -0.01 -0.13 7.06 -81.94 -0.58 -0.71 16 22 C -0.09 -0.88 10.64 -39.10 -0.42 -1.30 16 23 C -0.10 -0.96 6.66 -39.90 -0.27 -1.22 16 24 Cl -0.03 -0.25 29.12 -51.86 -1.51 -1.76 16 25 C 0.10 0.87 7.75 -16.76 -0.13 0.74 16 26 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 27 N -0.52 -4.17 6.01 -6.51 -0.04 -4.21 16 28 H 0.43 2.41 8.19 -40.82 -0.33 2.07 16 29 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 32 H 0.05 1.25 7.00 -51.93 -0.36 0.89 16 33 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 34 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 39 H 0.40 3.48 7.60 -40.82 -0.31 3.17 16 40 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -31.20 365.28 -9.91 -41.11 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.13 Total: 0.88 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.94 Total: 0.68 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.38 Total: -53.51 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -3.02 Total: -3.23 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.20 -9.91 -41.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092864836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.813 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds