Wall clock time and date at job start Wed Apr 1 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.28999 * 2 1 4 4 C 1.54001 * 110.33225 * 237.86024 * 2 1 3 5 5 N 1.47485 * 107.08653 * 242.31425 * 4 2 1 6 6 C 1.34779 * 127.03409 * 154.51620 * 5 4 2 7 7 O 1.21715 * 119.99958 * 185.61041 * 6 5 4 8 8 C 1.46544 * 119.99937 * 5.61035 * 6 5 4 9 9 C 1.37955 * 126.22066 * 186.58326 * 8 6 5 10 10 C 1.39796 * 107.12584 * 179.78724 * 9 8 6 11 11 Cl 1.73599 * 126.06137 * 180.23828 * 10 9 8 12 12 C 1.35720 * 107.87392 * 0.37816 * 10 9 8 13 13 Cl 1.73599 * 125.58093 * 179.87478 * 12 10 9 14 14 N 1.35664 * 108.83082 * 359.61708 * 12 10 9 15 15 H 0.96996 * 125.68682 * 180.21531 * 14 12 10 16 16 C 1.48117 * 105.93028 * 334.77484 * 5 4 2 17 17 C 1.54594 * 103.42175 * 39.02539 * 16 5 4 18 18 H 1.09008 * 110.57679 * 81.17193 * 17 16 5 19 19 C 1.53004 * 110.99055 * 204.37094 * 17 16 5 20 20 N 1.46507 * 109.46798 * 288.65754 * 19 17 16 21 21 C 1.36938 * 119.99411 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00236 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99752 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99577 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99996 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46821 * 59.99710 * 25 23 21 27 27 H 1.48495 * 109.46762 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.46975 * 299.99784 * 25 23 21 29 29 H 1.09002 * 109.46921 * 180.68313 * 1 2 3 30 30 H 1.08997 * 109.47271 * 300.68589 * 1 2 3 31 31 H 1.08995 * 109.46742 * 60.68552 * 1 2 3 32 32 H 1.09001 * 109.91219 * 122.94500 * 4 2 1 33 33 H 1.09006 * 109.90666 * 1.67555 * 4 2 1 34 34 H 1.08003 * 126.44169 * 0.02562 * 9 8 6 35 35 H 1.09001 * 110.65927 * 157.50655 * 16 5 4 36 36 H 1.08998 * 110.66260 * 280.62833 * 16 5 4 37 37 H 1.09000 * 109.47046 * 48.64895 * 19 17 16 38 38 H 1.08995 * 109.47654 * 168.65419 * 19 17 16 39 39 H 0.96992 * 120.00025 * 359.97438 * 20 19 17 40 40 H 0.97003 * 119.99521 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7682 -1.2228 5 7 2.8299 -1.9204 -0.7100 6 6 3.0647 -3.0860 -1.3445 7 8 3.6279 -3.9937 -0.7612 8 6 2.6418 -3.2606 -2.7367 9 6 2.7004 -4.4302 -3.4659 10 6 2.1939 -4.1480 -4.7380 11 17 2.0373 -5.2754 -6.0488 12 6 1.8492 -2.8356 -4.7674 13 17 1.1737 -1.9990 -6.1303 14 7 2.1137 -2.2861 -3.5556 15 1 1.9576 -1.3616 -3.3073 16 6 3.2817 -1.5367 0.6474 17 6 2.0693 -0.7719 1.2263 18 1 1.3209 -1.4691 1.6033 19 6 2.5071 0.1968 2.3268 20 7 2.9001 -0.5616 3.5170 21 6 3.3306 0.0975 4.6375 22 1 3.3809 1.1763 4.6435 23 6 3.7035 -0.6211 5.7651 24 7 3.6427 -1.9358 5.7575 25 14 4.2916 0.2780 7.2934 26 1 3.2172 1.1795 7.7814 27 1 4.6266 -0.7097 8.3504 28 1 5.4977 1.0787 6.9632 29 1 -0.3633 -1.0276 0.0123 30 1 -0.3633 0.5244 0.8837 31 1 -0.3632 0.5031 -0.8960 32 1 2.7167 -0.1221 -1.8111 33 1 1.2334 -1.1174 -1.8348 34 1 3.0650 -5.3854 -3.1182 35 1 3.4980 -2.4221 1.2452 36 1 4.1541 -0.8856 0.5927 37 1 3.3539 0.7866 1.9758 38 1 1.6799 0.8614 2.5761 39 1 2.8546 -1.5304 3.5116 40 1 3.9029 -2.4379 6.5456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106498901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:12 Heat of formation + Delta-G solvation = 16.613488 kcal Electronic energy + Delta-G solvation = -25204.177750 eV Core-core repulsion = 21299.972990 eV Total energy + Delta-G solvation = -3904.204761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99024 -39.90750 -38.00585 -37.25711 -36.81101 -34.80694 -33.09142 -31.77245 -31.40452 -30.04560 -28.82433 -26.79671 -25.67501 -23.65823 -22.41556 -21.41068 -21.14642 -20.73483 -20.07741 -18.32374 -17.11324 -16.78085 -16.26921 -15.85899 -15.40529 -15.01262 -14.69024 -14.46654 -14.32317 -13.95778 -13.69802 -13.67174 -13.42436 -13.09998 -13.05813 -12.52996 -12.35358 -12.32165 -12.11899 -12.07343 -11.86056 -11.46140 -11.25517 -11.20629 -10.90429 -10.70917 -10.59605 -10.49763 -10.26840 -10.07711 -9.71304 -9.44674 -8.95009 -8.89186 -8.61901 -6.97178 -5.78630 -3.08715 0.82502 1.00569 1.72981 1.82160 2.56162 2.90527 3.03323 3.42426 3.46769 3.48343 4.11271 4.25201 4.41316 4.51442 4.60812 4.68148 4.86863 5.04616 5.06043 5.23609 5.34686 5.35771 5.51639 5.57058 5.62684 5.73997 5.81893 5.88057 5.98142 6.02987 6.04513 6.07196 6.29850 6.31364 6.48587 6.62075 6.73464 7.29348 7.66118 7.89049 8.39266 9.50553 10.06593 10.40769 11.43747 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002229 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.249511 B =12560.285839 C =13508.098873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.092 0.908 4 C 0.090 3.910 5 N -0.620 5.620 6 C 0.605 3.395 7 O -0.512 6.512 8 C -0.007 4.007 9 C -0.088 4.088 10 C -0.097 4.097 11 Cl -0.028 7.028 12 C 0.092 3.908 13 Cl 0.003 6.997 14 N -0.525 5.525 15 H 0.428 0.572 16 C 0.116 3.884 17 C -0.102 4.102 18 H 0.086 0.914 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.244 4.244 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.169 0.831 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.024 0.976 39 H 0.385 0.615 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.818 0.939 -26.276 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.110 0.890 4 C -0.034 4.034 5 N -0.354 5.354 6 C 0.393 3.607 7 O -0.387 6.387 8 C -0.121 4.121 9 C -0.115 4.115 10 C -0.132 4.132 11 Cl 0.000 7.000 12 C -0.052 4.052 13 Cl 0.031 6.969 14 N -0.130 5.130 15 H 0.273 0.727 16 C -0.005 4.005 17 C -0.122 4.122 18 H 0.105 0.895 19 C 0.038 3.962 20 N -0.377 5.377 21 C -0.375 4.375 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.187 0.813 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.218 0.782 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.517 0.618 -26.029 26.840 hybrid contribution 0.064 0.734 0.599 0.950 sum -6.453 1.352 -25.430 26.271 Atomic orbital electron populations 1.21861 0.93849 1.02192 1.02216 1.22068 0.96550 0.99787 0.93221 0.88954 1.22460 0.94917 0.88043 0.97981 1.48764 1.53450 1.14163 1.18976 1.16381 0.79566 0.81451 0.83293 1.90932 1.42504 1.39510 1.65717 1.20486 1.09944 0.89035 0.92593 1.21170 1.01672 0.98389 0.90228 1.19621 1.11775 0.89246 0.92563 1.98353 1.96872 1.59188 1.45567 1.20621 1.08388 0.91258 0.84915 1.98427 1.82956 1.77844 1.37657 1.42564 1.48927 1.12700 1.08839 0.72736 1.22604 0.96990 1.00540 0.80375 1.22540 0.97093 0.97927 0.94606 0.89532 1.20615 0.96642 0.92648 0.86338 1.42356 1.79327 1.05938 1.10089 1.19140 1.36414 0.91190 0.90801 0.91236 1.24761 1.02211 0.95492 0.98329 1.69652 1.54044 1.04540 1.29630 0.86268 0.78589 0.78367 0.82934 1.21279 1.21659 1.21245 0.92498 0.91394 0.92733 0.91163 0.91347 0.81311 0.88668 0.90217 0.96060 0.95821 0.78158 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.90 37.16 0.33 -0.95 16 2 C -0.10 -0.97 3.17 -89.25 -0.28 -1.25 16 3 H 0.09 0.84 7.85 -51.93 -0.41 0.43 16 4 C 0.09 0.79 5.02 -2.98 -0.01 0.78 16 5 N -0.62 -7.83 3.29 -171.56 -0.57 -8.39 16 6 C 0.60 8.53 7.84 -12.91 -0.10 8.43 16 7 O -0.51 -9.22 17.08 5.18 0.09 -9.13 16 8 C -0.01 -0.08 6.85 -81.94 -0.56 -0.64 16 9 C -0.09 -0.97 10.65 -39.10 -0.42 -1.38 16 10 C -0.10 -0.97 6.66 -39.90 -0.27 -1.24 16 11 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 12 C 0.09 0.83 7.75 -16.76 -0.13 0.70 16 13 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 14 N -0.52 -4.53 5.42 -6.51 -0.04 -4.56 16 15 H 0.43 2.76 5.47 -40.82 -0.22 2.54 16 16 C 0.12 1.73 6.47 -2.32 -0.01 1.72 16 17 C -0.10 -1.46 2.60 -88.93 -0.23 -1.69 16 18 H 0.09 1.36 7.86 -51.92 -0.41 0.96 16 19 C 0.17 3.00 5.59 -4.04 -0.02 2.98 16 20 N -0.73 -17.75 5.52 -59.90 -0.33 -18.08 16 21 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 25 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.48 7.94 -51.93 -0.41 0.06 16 33 H 0.07 0.50 5.69 -51.93 -0.30 0.20 16 34 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 35 H 0.09 1.71 7.81 -51.93 -0.41 1.30 16 36 H 0.08 1.18 7.94 -51.93 -0.41 0.77 16 37 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.38 9.95 7.67 -40.82 -0.31 9.63 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -31.84 363.46 -9.59 -41.44 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.95 Total: 6.42 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.96 Total: 0.22 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.21 Total: -58.30 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -3.02 Total: -3.26 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.84 -9.59 -41.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106498901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.051 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds