Wall clock time and date at job start Wed Apr 1 2020 04:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.28999 * 2 1 4 4 C 1.54001 * 110.33225 * 237.86024 * 2 1 3 5 5 N 1.47485 * 107.08653 * 242.31425 * 4 2 1 6 6 C 1.34779 * 127.03409 * 154.51620 * 5 4 2 7 7 O 1.21715 * 119.99958 * 185.61041 * 6 5 4 8 8 C 1.46544 * 119.99937 * 5.61035 * 6 5 4 9 9 C 1.37955 * 126.22066 * 186.58326 * 8 6 5 10 10 C 1.39796 * 107.12584 * 179.78724 * 9 8 6 11 11 Cl 1.73599 * 126.06137 * 180.23828 * 10 9 8 12 12 C 1.35720 * 107.87392 * 0.37816 * 10 9 8 13 13 Cl 1.73599 * 125.58093 * 179.87478 * 12 10 9 14 14 N 1.35664 * 108.83082 * 359.61708 * 12 10 9 15 15 H 0.96996 * 125.68682 * 180.21531 * 14 12 10 16 16 C 1.48117 * 105.93028 * 334.77484 * 5 4 2 17 17 C 1.54594 * 103.42175 * 39.02539 * 16 5 4 18 18 H 1.09008 * 110.57679 * 81.17193 * 17 16 5 19 19 C 1.53004 * 110.99055 * 204.37094 * 17 16 5 20 20 N 1.46507 * 109.46798 * 288.65754 * 19 17 16 21 21 C 1.36938 * 119.99411 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00236 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99752 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99577 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99996 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46821 * 59.99710 * 25 23 21 27 27 H 1.48495 * 109.46762 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.46975 * 299.99784 * 25 23 21 29 29 H 1.09002 * 109.46921 * 180.68313 * 1 2 3 30 30 H 1.08997 * 109.47271 * 300.68589 * 1 2 3 31 31 H 1.08995 * 109.46742 * 60.68552 * 1 2 3 32 32 H 1.09001 * 109.91219 * 122.94500 * 4 2 1 33 33 H 1.09006 * 109.90666 * 1.67555 * 4 2 1 34 34 H 1.08003 * 126.44169 * 0.02562 * 9 8 6 35 35 H 1.09001 * 110.65927 * 157.50655 * 16 5 4 36 36 H 1.08998 * 110.66260 * 280.62833 * 16 5 4 37 37 H 1.09000 * 109.47046 * 48.64895 * 19 17 16 38 38 H 1.08995 * 109.47654 * 168.65419 * 19 17 16 39 39 H 0.96992 * 120.00025 * 359.97438 * 20 19 17 40 40 H 0.97003 * 119.99521 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0651 -0.7682 -1.2228 5 7 2.8299 -1.9204 -0.7100 6 6 3.0647 -3.0860 -1.3445 7 8 3.6279 -3.9937 -0.7612 8 6 2.6418 -3.2606 -2.7367 9 6 2.7004 -4.4302 -3.4659 10 6 2.1939 -4.1480 -4.7380 11 17 2.0373 -5.2754 -6.0488 12 6 1.8492 -2.8356 -4.7674 13 17 1.1737 -1.9990 -6.1303 14 7 2.1137 -2.2861 -3.5556 15 1 1.9576 -1.3616 -3.3073 16 6 3.2817 -1.5367 0.6474 17 6 2.0693 -0.7719 1.2263 18 1 1.3209 -1.4691 1.6033 19 6 2.5071 0.1968 2.3268 20 7 2.9001 -0.5616 3.5170 21 6 3.3306 0.0975 4.6375 22 1 3.3809 1.1763 4.6435 23 6 3.7035 -0.6211 5.7651 24 7 3.6427 -1.9358 5.7575 25 14 4.2916 0.2780 7.2934 26 1 3.2172 1.1795 7.7814 27 1 4.6266 -0.7097 8.3504 28 1 5.4977 1.0787 6.9632 29 1 -0.3633 -1.0276 0.0123 30 1 -0.3633 0.5244 0.8837 31 1 -0.3632 0.5031 -0.8960 32 1 2.7167 -0.1221 -1.8111 33 1 1.2334 -1.1174 -1.8348 34 1 3.0650 -5.3854 -3.1182 35 1 3.4980 -2.4221 1.2452 36 1 4.1541 -0.8856 0.5927 37 1 3.3539 0.7866 1.9758 38 1 1.6799 0.8614 2.5761 39 1 2.8546 -1.5304 3.5116 40 1 3.9029 -2.4379 6.5456 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106498901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:12 Heat of formation + Delta-G solvation = -3.538826 kcal Electronic energy + Delta-G solvation = -25205.051620 eV Core-core repulsion = 21299.972990 eV Total energy + Delta-G solvation = -3905.078630 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.82105 -40.93165 -39.14314 -37.93932 -37.54819 -36.50803 -34.35992 -33.10324 -32.47136 -31.20972 -30.04853 -27.61241 -27.16358 -25.22963 -23.63935 -22.31419 -22.20506 -21.57313 -21.17129 -19.46580 -18.84113 -17.75237 -17.40188 -16.84672 -16.63555 -16.14070 -15.79789 -15.67952 -15.40474 -15.14544 -14.92512 -14.85330 -14.51177 -14.40009 -14.14831 -13.69457 -13.42777 -13.25632 -13.01854 -12.94103 -12.89402 -12.72476 -12.51186 -12.49317 -12.20839 -12.01482 -11.95573 -11.84110 -11.61686 -11.50833 -11.36214 -10.92068 -10.25907 -9.95272 -9.42181 -8.99388 -7.93927 -5.23247 -0.04227 0.27213 0.99298 1.00323 1.47584 1.50668 1.56890 1.58365 1.99588 2.13938 2.56624 3.21014 3.39100 3.40075 3.55562 3.70492 3.75944 4.02332 4.12201 4.19212 4.26707 4.39907 4.41355 4.47739 4.54162 4.69156 4.76550 4.84286 4.88377 4.98941 5.03752 5.14936 5.21028 5.24492 5.31402 5.47193 5.51571 5.80417 6.27406 6.27981 6.81389 7.33718 8.10335 8.31207 9.29472 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.022978 B = 0.002229 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.249511 B =12560.285839 C =13508.098873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.086 4.086 3 H 0.113 0.887 4 C 0.086 3.914 5 N -0.617 5.617 6 C 0.602 3.398 7 O -0.566 6.566 8 C -0.018 4.018 9 C -0.091 4.091 10 C -0.110 4.110 11 Cl -0.023 7.023 12 C 0.108 3.892 13 Cl 0.025 6.975 14 N -0.508 5.508 15 H 0.439 0.561 16 C 0.119 3.881 17 C -0.094 4.094 18 H 0.066 0.934 19 C 0.165 3.835 20 N -0.748 5.748 21 C -0.243 4.243 22 H 0.080 0.920 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.974 3.026 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.277 1.277 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.371 0.629 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.864 3.566 -28.755 30.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.131 0.869 4 C -0.036 4.036 5 N -0.349 5.349 6 C 0.392 3.608 7 O -0.444 6.444 8 C -0.132 4.132 9 C -0.118 4.118 10 C -0.144 4.144 11 Cl 0.006 6.994 12 C -0.038 4.038 13 Cl 0.053 6.947 14 N -0.115 5.115 15 H 0.287 0.713 16 C -0.003 4.003 17 C -0.113 4.113 18 H 0.085 0.915 19 C 0.039 3.961 20 N -0.391 5.391 21 C -0.375 4.375 22 H 0.098 0.902 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.803 3.197 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.203 1.203 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.183 0.817 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.203 0.797 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.601 3.343 -28.554 29.737 hybrid contribution 0.334 -0.036 1.231 1.276 sum -7.267 3.307 -27.323 28.466 Atomic orbital electron populations 1.21863 0.92725 1.01919 1.03424 1.22065 0.97407 1.00149 0.90903 0.86898 1.22778 0.95940 0.86939 0.97944 1.48753 1.53292 1.14905 1.17963 1.16722 0.78839 0.81015 0.84176 1.90899 1.45064 1.41334 1.67150 1.19911 1.11804 0.89987 0.91509 1.21267 1.01352 0.98395 0.90809 1.19653 1.12380 0.89967 0.92446 1.98355 1.96863 1.59123 1.45056 1.20702 1.06807 0.91068 0.85232 1.98446 1.82474 1.77300 1.36437 1.42407 1.48065 1.12787 1.08228 0.71329 1.22367 0.97598 0.98861 0.81507 1.22342 0.96316 0.97304 0.95384 0.91538 1.20799 0.96933 0.93071 0.85340 1.42630 1.79350 1.05696 1.11422 1.19613 1.34512 0.91807 0.91551 0.90188 1.25611 1.03627 0.96224 1.01639 1.69831 1.56186 1.06164 1.30076 0.85206 0.78433 0.77061 0.79031 1.20182 1.22569 1.20267 0.93503 0.92343 0.89443 0.87691 0.89096 0.81681 0.92897 0.89965 0.95037 0.95010 0.79738 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.90 71.98 0.64 -1.46 16 2 C -0.09 -1.47 3.17 -9.90 -0.03 -1.50 16 3 H 0.11 1.56 7.85 -2.39 -0.02 1.54 16 4 C 0.09 1.24 5.02 86.53 0.43 1.67 16 5 N -0.62 -15.24 3.29 -814.91 -2.68 -17.92 16 6 C 0.60 17.24 7.84 86.41 0.68 17.92 16 7 O -0.57 -21.64 17.08 -4.40 -0.08 -21.72 16 8 C -0.02 -0.39 6.85 40.30 0.28 -0.12 16 9 C -0.09 -1.96 10.65 22.58 0.24 -1.72 16 10 C -0.11 -2.02 6.66 22.06 0.15 -1.87 16 11 Cl -0.02 -0.38 29.12 -2.72 -0.08 -0.46 16 12 C 0.11 1.65 7.75 83.52 0.65 2.29 16 13 Cl 0.02 0.29 29.13 -2.72 -0.08 0.21 16 14 N -0.51 -7.38 5.42 -174.52 -0.95 -8.32 16 15 H 0.44 3.93 5.47 -92.71 -0.51 3.43 16 16 C 0.12 3.66 6.47 86.61 0.56 4.22 16 17 C -0.09 -2.66 2.60 -9.70 -0.03 -2.68 16 18 H 0.07 2.17 7.86 -2.38 -0.02 2.15 16 19 C 0.16 5.89 5.59 86.38 0.48 6.37 16 20 N -0.75 -37.02 5.52 -343.43 -1.90 -38.92 16 21 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 22 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 24 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 25 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 0.90 7.94 -2.39 -0.02 0.88 16 33 H 0.09 0.94 5.69 -2.38 -0.01 0.93 16 34 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.05 2.07 7.81 -2.39 -0.02 2.05 16 36 H 0.08 2.46 7.94 -2.39 -0.02 2.44 16 37 H 0.03 1.09 8.00 -2.39 -0.02 1.07 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.37 20.14 7.67 -92.71 -0.71 19.43 16 40 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -72.18 363.46 1.79 -70.39 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -0.12 Total: 22.28 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 5.35 Total: 6.57 kcal Atomic # 7 Polarization: -120.08 SS G_CDS: -5.24 Total: -125.33 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.08 Total: -21.72 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.16 Total: -0.25 kcal Total: -72.18 1.79 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106498901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.849 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds