Wall clock time and date at job start Wed Apr 1 2020 04:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47381 * 2 1 4 4 C 1.52999 * 109.47161 * 240.00408 * 2 1 3 5 5 C 1.53000 * 109.47372 * 174.83851 * 4 2 1 6 6 H 1.08993 * 109.47355 * 54.14288 * 5 4 2 7 7 C 1.53003 * 109.46708 * 294.14123 * 5 4 2 8 8 N 1.46497 * 109.47142 * 174.14645 * 5 4 2 9 9 C 1.34779 * 119.99903 * 206.56360 * 8 5 4 10 10 O 1.21535 * 119.99769 * 5.36855 * 9 8 5 11 11 C 1.47996 * 120.00108 * 185.36150 * 9 8 5 12 12 C 1.39975 * 120.94388 * 265.41149 * 11 9 8 13 13 Cl 1.73594 * 120.51060 * 0.02562 * 12 11 9 14 14 C 1.38290 * 118.97772 * 179.97438 * 12 11 9 15 15 N 1.31788 * 120.91604 * 0.02562 * 14 12 11 16 16 C 1.31790 * 122.09896 * 359.97438 * 15 14 12 17 17 C 1.38299 * 120.91026 * 0.02562 * 16 15 14 18 18 Cl 1.73605 * 120.50879 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.47325 * 120.00465 * 2 1 3 20 20 C 1.36941 * 119.99861 * 276.95858 * 19 2 1 21 21 H 1.08001 * 120.00213 * 4.89812 * 20 19 2 22 22 C 1.38806 * 119.99836 * 184.90147 * 20 19 2 23 23 N 1.31620 * 120.00060 * 184.22303 * 22 20 19 24 24 Si 1.86800 * 120.00348 * 4.22799 * 22 20 19 25 25 H 1.48498 * 109.47310 * 93.14659 * 24 22 20 26 26 H 1.48501 * 109.47410 * 213.15083 * 24 22 20 27 27 H 1.48499 * 109.47113 * 333.15025 * 24 22 20 28 28 H 1.09002 * 109.47267 * 59.99688 * 1 2 3 29 29 H 1.09000 * 109.47381 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46782 * 299.99873 * 1 2 3 31 31 H 1.08995 * 109.47061 * 54.83062 * 4 2 1 32 32 H 1.09005 * 109.46722 * 294.83852 * 4 2 1 33 33 H 1.08993 * 109.47348 * 300.00170 * 7 5 4 34 34 H 1.08999 * 109.46793 * 60.00322 * 7 5 4 35 35 H 1.09001 * 109.46915 * 179.97438 * 7 5 4 36 36 H 0.97001 * 120.00308 * 26.55942 * 8 5 4 37 37 H 1.07994 * 119.54377 * 179.72629 * 14 12 11 38 38 H 1.07997 * 119.54811 * 180.02562 * 16 15 14 39 39 H 0.96998 * 120.00173 * 96.94817 * 19 2 1 40 40 H 0.96997 * 120.00271 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5645 -0.6098 -1.3159 6 1 3.9964 -0.9728 -0.3834 7 6 3.9602 0.8532 -1.5258 8 7 4.0647 -1.4159 -2.4322 9 6 5.3161 -1.9151 -2.3953 10 8 5.9950 -1.7799 -1.3964 11 6 5.8634 -2.6280 -3.5711 12 6 5.7872 -4.0223 -3.6671 13 17 5.0449 -4.9535 -2.4039 14 6 6.3113 -4.6466 -4.7842 15 7 6.8761 -3.9475 -5.7481 16 6 6.9690 -2.6339 -5.6984 17 6 6.4719 -1.9269 -4.6187 18 17 6.5994 -0.1964 -4.5643 19 7 2.0184 -0.6907 1.1961 20 6 2.1112 -0.0180 2.3853 21 1 1.7508 0.9973 2.4610 22 6 2.6685 -0.6410 3.4934 23 7 2.6824 -0.0256 4.6568 24 14 3.3990 -2.3528 3.3337 25 1 4.8538 -2.2463 3.0553 26 1 3.1907 -3.1001 4.5999 27 1 2.7332 -3.0730 2.2186 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6030 -0.2635 -2.1368 32 1 1.7541 -1.7721 -1.2043 33 1 3.5282 1.2162 -2.4584 34 1 3.5880 1.4530 -0.6953 35 1 5.0463 0.9327 -1.5728 36 1 3.4953 -1.5905 -3.1978 37 1 6.2614 -5.7224 -4.8657 38 1 7.4400 -2.1021 -6.5119 39 1 2.2759 -1.6245 1.1458 40 1 3.0722 -0.4608 5.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135379551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:27 Heat of formation + Delta-G solvation = -2.774227 kcal Electronic energy + Delta-G solvation = -25706.016589 eV Core-core repulsion = 21800.971114 eV Total energy + Delta-G solvation = -3905.045475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.16366 -39.56667 -37.34635 -37.23432 -37.02280 -34.81218 -33.31067 -32.21977 -31.60604 -30.52850 -29.11351 -26.48933 -25.59723 -24.22962 -23.44353 -22.04228 -20.71261 -19.82330 -18.61526 -17.77783 -17.55247 -17.17755 -16.38177 -15.84055 -15.15406 -15.13624 -15.06161 -14.68502 -14.07999 -13.96776 -13.83149 -13.18571 -12.92165 -12.87893 -12.70159 -12.38261 -12.37512 -12.18347 -12.07924 -11.89820 -11.55900 -11.49393 -11.17349 -10.89945 -10.76274 -10.63562 -10.55856 -10.39864 -10.20779 -9.99690 -9.82039 -9.56486 -9.50195 -9.13186 -8.88726 -7.23065 -5.74523 -3.09795 0.09317 0.09979 1.19155 1.57204 2.24594 2.74007 2.86809 3.40504 3.46450 3.52612 3.70992 4.00641 4.05746 4.22707 4.44749 4.63068 4.84095 5.00770 5.06600 5.15312 5.40022 5.50004 5.56291 5.56767 5.68844 5.84514 5.93764 6.04840 6.15447 6.25666 6.29988 6.40511 6.50050 6.57561 6.81334 6.98214 7.01118 7.29607 7.95953 8.02759 8.44921 9.24074 9.96781 10.16095 11.43812 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003585 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.819517 B = 7809.349993 C = 8688.176486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.179 3.821 3 H 0.060 0.940 4 C -0.132 4.132 5 C 0.140 3.860 6 H 0.105 0.895 7 C -0.159 4.159 8 N -0.708 5.708 9 C 0.559 3.441 10 O -0.499 6.499 11 C -0.061 4.061 12 C -0.056 4.056 13 Cl -0.019 7.019 14 C 0.120 3.880 15 N -0.445 5.445 16 C 0.119 3.881 17 C -0.055 4.055 18 Cl -0.022 7.022 19 N -0.749 5.749 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.008 3.992 23 N -0.933 5.933 24 Si 0.881 3.119 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.280 1.280 28 H 0.038 0.962 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.398 0.602 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.361 0.639 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -6.297 -26.126 27.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.078 0.922 4 C -0.171 4.171 5 C 0.037 3.963 6 H 0.123 0.877 7 C -0.217 4.217 8 N -0.358 5.358 9 C 0.341 3.659 10 O -0.372 6.372 11 C -0.074 4.074 12 C -0.086 4.086 13 Cl 0.010 6.990 14 C -0.038 4.038 15 N -0.153 5.153 16 C -0.039 4.039 17 C -0.085 4.085 18 Cl 0.007 6.993 19 N -0.393 5.393 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.188 4.188 23 N -0.581 5.581 24 Si 0.711 3.289 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.206 1.206 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.231 0.769 37 H 0.197 0.803 38 H 0.196 0.804 39 H 0.195 0.805 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.991 -6.343 -25.778 27.214 hybrid contribution -0.145 -0.908 0.507 1.050 sum 5.846 -7.251 -25.271 26.932 Atomic orbital electron populations 1.22394 0.98688 1.00854 1.00456 1.20208 0.92083 0.95899 0.84931 0.92184 1.22174 0.93291 1.01822 0.99817 1.21190 0.94585 0.90729 0.89769 0.87688 1.22167 1.01601 0.95736 1.02183 1.46091 1.13480 1.52927 1.23338 1.17730 0.82913 0.79136 0.86092 1.90919 1.58621 1.56804 1.30891 1.20428 0.99036 0.92672 0.95272 1.22208 1.01298 0.91098 0.93951 1.98466 1.79745 1.71465 1.49279 1.22960 0.92298 1.01429 0.87102 1.67859 1.13439 1.07285 1.26745 1.22953 0.95326 0.89611 0.95974 1.22170 1.02283 0.88064 0.96026 1.98447 1.96331 1.06356 1.98129 1.42910 1.79480 1.10516 1.06389 1.19020 1.33376 0.98702 0.86054 0.89240 1.24650 1.00918 0.97645 0.95562 1.69701 1.50664 1.38070 0.99638 0.86616 0.80035 0.85754 0.76452 1.20830 1.21884 1.20637 0.94280 0.93662 0.92243 0.91365 0.91612 0.92972 0.90101 0.92720 0.76875 0.80343 0.80371 0.80506 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.47 37.16 0.35 -2.35 16 2 C 0.18 3.17 2.77 -67.93 -0.19 2.99 16 3 H 0.06 1.10 6.33 -51.93 -0.33 0.77 16 4 C -0.13 -1.84 4.40 -26.73 -0.12 -1.96 16 5 C 0.14 2.10 2.66 -67.93 -0.18 1.92 16 6 H 0.11 2.05 6.91 -51.93 -0.36 1.69 16 7 C -0.16 -2.24 9.28 37.16 0.34 -1.90 16 8 N -0.71 -8.87 5.06 -54.70 -0.28 -9.14 16 9 C 0.56 8.06 5.61 -12.26 -0.07 7.99 16 10 O -0.50 -9.52 16.71 5.33 0.09 -9.43 16 11 C -0.06 -0.71 5.68 -104.60 -0.59 -1.30 16 12 C -0.06 -0.57 6.38 -38.91 -0.25 -0.82 16 13 Cl -0.02 -0.21 28.17 -51.86 -1.46 -1.67 16 14 C 0.12 0.97 10.98 -17.55 -0.19 0.78 16 15 N -0.44 -3.77 10.33 -13.24 -0.14 -3.91 16 16 C 0.12 0.92 10.98 -17.55 -0.19 0.73 16 17 C -0.06 -0.53 6.38 -38.91 -0.25 -0.78 16 18 Cl -0.02 -0.21 28.17 -51.86 -1.46 -1.67 16 19 N -0.75 -17.14 4.29 -53.43 -0.23 -17.37 16 20 C -0.24 -6.70 10.39 -15.06 -0.16 -6.86 16 21 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 22 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 24 Si 0.88 22.91 27.96 -169.99 -4.75 18.16 16 25 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.68 7.11 56.52 0.40 -7.27 16 27 H -0.28 -6.83 6.21 56.52 0.35 -6.48 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.25 6.49 -51.93 -0.34 0.91 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.40 3.75 8.61 -40.82 -0.35 3.40 16 37 H 0.18 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.36 8.40 5.53 -40.82 -0.23 8.17 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -33.87 368.90 -8.50 -42.37 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.02 Total: 7.24 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.59 Total: -1.41 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.13 Total: -59.15 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.75 Total: 18.16 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -2.92 Total: -3.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.87 -8.50 -42.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135379551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.596 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds