Wall clock time and date at job start Wed Apr 1 2020 04:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47381 * 2 1 4 4 C 1.52999 * 109.47161 * 240.00408 * 2 1 3 5 5 C 1.53000 * 109.47372 * 174.83851 * 4 2 1 6 6 H 1.08993 * 109.47355 * 54.14288 * 5 4 2 7 7 C 1.53003 * 109.46708 * 294.14123 * 5 4 2 8 8 N 1.46497 * 109.47142 * 174.14645 * 5 4 2 9 9 C 1.34779 * 119.99903 * 206.56360 * 8 5 4 10 10 O 1.21535 * 119.99769 * 5.36855 * 9 8 5 11 11 C 1.47996 * 120.00108 * 185.36150 * 9 8 5 12 12 C 1.39975 * 120.94388 * 265.41149 * 11 9 8 13 13 Cl 1.73594 * 120.51060 * 0.02562 * 12 11 9 14 14 C 1.38290 * 118.97772 * 179.97438 * 12 11 9 15 15 N 1.31788 * 120.91604 * 0.02562 * 14 12 11 16 16 C 1.31790 * 122.09896 * 359.97438 * 15 14 12 17 17 C 1.38299 * 120.91026 * 0.02562 * 16 15 14 18 18 Cl 1.73605 * 120.50879 * 180.02562 * 17 16 15 19 19 N 1.46501 * 109.47325 * 120.00465 * 2 1 3 20 20 C 1.36941 * 119.99861 * 276.95858 * 19 2 1 21 21 H 1.08001 * 120.00213 * 4.89812 * 20 19 2 22 22 C 1.38806 * 119.99836 * 184.90147 * 20 19 2 23 23 N 1.31620 * 120.00060 * 184.22303 * 22 20 19 24 24 Si 1.86800 * 120.00348 * 4.22799 * 22 20 19 25 25 H 1.48498 * 109.47310 * 93.14659 * 24 22 20 26 26 H 1.48501 * 109.47410 * 213.15083 * 24 22 20 27 27 H 1.48499 * 109.47113 * 333.15025 * 24 22 20 28 28 H 1.09002 * 109.47267 * 59.99688 * 1 2 3 29 29 H 1.09000 * 109.47381 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46782 * 299.99873 * 1 2 3 31 31 H 1.08995 * 109.47061 * 54.83062 * 4 2 1 32 32 H 1.09005 * 109.46722 * 294.83852 * 4 2 1 33 33 H 1.08993 * 109.47348 * 300.00170 * 7 5 4 34 34 H 1.08999 * 109.46793 * 60.00322 * 7 5 4 35 35 H 1.09001 * 109.46915 * 179.97438 * 7 5 4 36 36 H 0.97001 * 120.00308 * 26.55942 * 8 5 4 37 37 H 1.07994 * 119.54377 * 179.72629 * 14 12 11 38 38 H 1.07997 * 119.54811 * 180.02562 * 16 15 14 39 39 H 0.96998 * 120.00173 * 96.94817 * 19 2 1 40 40 H 0.96997 * 120.00271 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5645 -0.6098 -1.3159 6 1 3.9964 -0.9728 -0.3834 7 6 3.9602 0.8532 -1.5258 8 7 4.0647 -1.4159 -2.4322 9 6 5.3161 -1.9151 -2.3953 10 8 5.9950 -1.7799 -1.3964 11 6 5.8634 -2.6280 -3.5711 12 6 5.7872 -4.0223 -3.6671 13 17 5.0449 -4.9535 -2.4039 14 6 6.3113 -4.6466 -4.7842 15 7 6.8761 -3.9475 -5.7481 16 6 6.9690 -2.6339 -5.6984 17 6 6.4719 -1.9269 -4.6187 18 17 6.5994 -0.1964 -4.5643 19 7 2.0184 -0.6907 1.1961 20 6 2.1112 -0.0180 2.3853 21 1 1.7508 0.9973 2.4610 22 6 2.6685 -0.6410 3.4934 23 7 2.6824 -0.0256 4.6568 24 14 3.3990 -2.3528 3.3337 25 1 4.8538 -2.2463 3.0553 26 1 3.1907 -3.1001 4.5999 27 1 2.7332 -3.0730 2.2186 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6030 -0.2635 -2.1368 32 1 1.7541 -1.7721 -1.2043 33 1 3.5282 1.2162 -2.4584 34 1 3.5880 1.4530 -0.6953 35 1 5.0463 0.9327 -1.5728 36 1 3.4953 -1.5905 -3.1978 37 1 6.2614 -5.7224 -4.8657 38 1 7.4400 -2.1021 -6.5119 39 1 2.2759 -1.6245 1.1458 40 1 3.0722 -0.4608 5.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135379551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:18:27 Heat of formation + Delta-G solvation = -26.465661 kcal Electronic energy + Delta-G solvation = -25707.043927 eV Core-core repulsion = 21800.971114 eV Total energy + Delta-G solvation = -3906.072813 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.98713 -40.60312 -38.60411 -38.10882 -37.82679 -36.30250 -34.41843 -33.90441 -32.28208 -31.99625 -30.72934 -27.70010 -26.49433 -25.39262 -24.91992 -23.23929 -21.86165 -21.27020 -19.92405 -19.26571 -18.52127 -17.97545 -17.50580 -16.90498 -16.68351 -15.97603 -15.88104 -15.82925 -15.67150 -15.43043 -15.06054 -14.68849 -14.33183 -14.01228 -13.69944 -13.68719 -13.66780 -13.28321 -13.11227 -12.96957 -12.89270 -12.83446 -12.50651 -12.27415 -12.22238 -12.11804 -11.90395 -11.81387 -11.71254 -11.43304 -11.01527 -10.98235 -10.85852 -10.28852 -10.18699 -9.26983 -8.03006 -5.32700 -0.68174 -0.56551 0.44336 0.82250 1.16771 1.29018 1.37896 1.39373 1.77964 2.14333 2.44950 3.10304 3.20368 3.30085 3.30271 3.44940 3.61837 3.77707 3.85457 4.05242 4.12212 4.21567 4.47306 4.47624 4.56543 4.69600 4.82397 4.93674 4.96226 4.97008 5.06137 5.11892 5.22691 5.39140 5.45330 5.60706 5.81663 6.23112 6.25895 6.35651 6.93308 7.10563 7.89301 8.04832 9.19136 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003585 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.819517 B = 7809.349993 C = 8688.176486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 H 0.054 0.946 4 C -0.118 4.118 5 C 0.144 3.856 6 H 0.056 0.944 7 C -0.152 4.152 8 N -0.692 5.692 9 C 0.561 3.439 10 O -0.555 6.555 11 C -0.076 4.076 12 C -0.064 4.064 13 Cl -0.034 7.034 14 C 0.134 3.866 15 N -0.448 5.448 16 C 0.134 3.866 17 C -0.060 4.060 18 Cl -0.025 7.025 19 N -0.752 5.752 20 C -0.213 4.213 21 H 0.063 0.937 22 C -0.059 4.059 23 N -0.983 5.983 24 Si 0.940 3.060 25 H -0.296 1.296 26 H -0.295 1.295 27 H -0.254 1.254 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.038 0.962 36 H 0.416 0.584 37 H 0.208 0.792 38 H 0.211 0.789 39 H 0.361 0.639 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -7.570 -30.287 31.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.060 3.940 3 H 0.072 0.928 4 C -0.157 4.157 5 C 0.040 3.960 6 H 0.074 0.926 7 C -0.210 4.210 8 N -0.343 5.343 9 C 0.345 3.655 10 O -0.432 6.432 11 C -0.089 4.089 12 C -0.094 4.094 13 Cl -0.005 7.005 14 C -0.024 4.024 15 N -0.157 5.157 16 C -0.023 4.023 17 C -0.090 4.090 18 Cl 0.004 6.996 19 N -0.397 5.397 20 C -0.344 4.344 21 H 0.081 0.919 22 C -0.251 4.251 23 N -0.634 5.634 24 Si 0.770 3.230 25 H -0.223 1.223 26 H -0.222 1.222 27 H -0.179 1.179 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.253 0.747 37 H 0.224 0.776 38 H 0.227 0.773 39 H 0.194 0.806 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.468 -7.629 -30.045 31.477 hybrid contribution -0.015 -0.410 1.658 1.708 sum 5.453 -8.039 -28.388 30.003 Atomic orbital electron populations 1.22259 0.96951 1.01301 1.01021 1.20526 0.93152 0.95704 0.84625 0.92819 1.22056 0.92197 1.02104 0.99297 1.20930 0.95199 0.91195 0.88676 0.92551 1.22087 1.00718 0.95041 1.03141 1.45875 1.13326 1.51911 1.23168 1.18120 0.82744 0.78426 0.86178 1.90893 1.60044 1.59009 1.33290 1.20251 1.00507 0.93250 0.94870 1.22289 1.02254 0.90467 0.94347 1.98460 1.80119 1.71700 1.50190 1.23394 0.90509 1.02654 0.85811 1.68002 1.13482 1.07534 1.26636 1.23454 0.93694 0.89413 0.95766 1.22251 1.02608 0.87953 0.96153 1.98448 1.96358 1.06654 1.98153 1.42982 1.79607 1.10525 1.06542 1.19026 1.30306 0.97524 0.87587 0.91947 1.25306 1.02810 1.01419 0.95530 1.69850 1.53119 1.39969 1.00508 0.85623 0.78390 0.82060 0.76934 1.22338 1.22165 1.17897 0.90238 0.93243 0.95187 0.86865 0.90973 0.89563 0.91878 0.94303 0.74656 0.77561 0.77257 0.80560 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.74 9.47 71.98 0.68 -4.06 16 2 C 0.17 5.70 2.77 44.99 0.12 5.82 16 3 H 0.05 1.92 6.33 -2.39 -0.02 1.90 16 4 C -0.12 -2.93 4.40 30.59 0.13 -2.79 16 5 C 0.14 4.14 2.66 44.99 0.12 4.26 16 6 H 0.06 2.23 6.91 -2.39 -0.02 2.22 16 7 C -0.15 -4.13 9.28 71.98 0.67 -3.46 16 8 N -0.69 -16.16 5.06 -445.27 -2.25 -18.41 16 9 C 0.56 15.82 5.61 86.83 0.49 16.31 16 10 O -0.55 -21.68 16.71 -3.83 -0.06 -21.74 16 11 C -0.08 -1.64 5.68 -19.85 -0.11 -1.75 16 12 C -0.06 -1.18 6.38 22.70 0.14 -1.04 16 13 Cl -0.03 -0.72 28.17 -2.72 -0.08 -0.80 16 14 C 0.13 1.77 10.98 84.71 0.93 2.71 16 15 N -0.45 -6.08 10.33 -195.82 -2.02 -8.11 16 16 C 0.13 1.65 10.98 84.71 0.93 2.58 16 17 C -0.06 -1.02 6.38 22.71 0.14 -0.87 16 18 Cl -0.03 -0.44 28.17 -2.72 -0.08 -0.52 16 19 N -0.75 -34.29 4.29 -322.94 -1.38 -35.68 16 20 C -0.21 -12.09 10.39 84.03 0.87 -11.22 16 21 H 0.06 3.84 8.06 -2.91 -0.02 3.81 16 22 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 23 N -0.98 -64.49 13.97 21.65 0.30 -64.19 16 24 Si 0.94 48.62 27.96 68.60 1.92 50.54 16 25 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 26 H -0.29 -15.26 7.11 99.48 0.71 -14.55 16 27 H -0.25 -11.84 6.21 99.48 0.62 -11.22 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.94 6.49 -2.39 -0.02 1.92 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.42 6.60 8.61 -92.71 -0.80 5.80 16 37 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 39 H 0.36 16.50 5.53 -92.71 -0.51 15.98 16 40 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -77.87 368.90 1.63 -76.24 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.30 Total: 19.30 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.59 Total: 3.37 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -5.36 Total: -126.38 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.06 Total: -21.74 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 1.92 Total: 50.54 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.15 Total: -1.32 kcal Total: -77.87 1.63 -76.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135379551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.770 kcal (2) G-P(sol) polarization free energy of solvation -77.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds