Wall clock time and date at job start Wed Apr 1 2020 03:11:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30708 * 1
3 3 Si 1.86796 * 119.99960 * 2 1
4 4 H 1.48502 * 109.46721 * 239.99326 * 3 2 1
5 5 H 1.48499 * 109.47239 * 359.97438 * 3 2 1
6 6 H 1.48502 * 109.46841 * 119.99768 * 3 2 1
7 7 C 1.40040 * 119.99469 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99580 * 180.02562 * 7 2 1
9 9 C 1.41583 * 120.00106 * 0.02562 * 7 2 1
10 10 N 1.33479 * 119.19737 * 359.97438 * 9 7 2
11 11 C 1.32191 * 121.00346 * 179.72253 * 10 9 7
12 12 Cl 1.73599 * 120.30863 * 179.97438 * 11 10 9
13 13 C 1.38779 * 119.37710 * 0.02562 * 11 10 9
14 14 C 1.40643 * 118.51937 * 0.02562 * 13 11 10
15 15 N 1.36223 * 120.51323 * 179.97438 * 14 13 11
16 16 C 1.31414 * 120.00118 * 85.47179 * 15 14 13
17 17 N 1.37262 * 119.99971 * 5.58852 * 16 15 14
18 18 C 1.47855 * 119.99759 * 185.59422 * 16 15 14
19 19 C 1.39649 * 120.00494 * 359.72086 * 18 16 15
20 20 C 1.37737 * 119.99862 * 179.78896 * 19 18 16
21 21 C 1.39627 * 119.99923 * 0.48674 * 20 19 18
22 22 C 1.47939 * 119.99219 * 179.71898 * 21 20 19
23 23 N 1.34774 * 120.00199 * 0.02652 * 22 21 20
24 24 O 1.21544 * 119.99587 * 180.02562 * 22 21 20
25 25 C 1.39614 * 120.00719 * 359.74687 * 21 20 19
26 26 C 1.37734 * 120.00842 * 0.02562 * 25 21 20
27 27 N 1.33151 * 118.96949 * 359.97438 * 14 13 11
28 28 H 0.96997 * 119.99477 * 0.02562 * 1 2 3
29 29 H 1.07997 * 120.74060 * 179.97438 * 13 11 10
30 30 H 0.96999 * 120.00479 * 5.48900 * 17 16 15
31 31 H 0.97003 * 119.99577 * 185.48108 * 17 16 15
32 32 H 1.08000 * 120.00496 * 0.02562 * 19 18 16
33 33 H 1.07996 * 120.00319 * 180.23284 * 20 19 18
34 34 H 0.96997 * 120.00200 * 359.97438 * 23 22 21
35 35 H 0.97003 * 119.99845 * 179.97438 * 23 22 21
36 36 H 1.08008 * 119.99517 * 179.97438 * 25 21 20
37 37 H 1.07997 * 120.00960 * 179.97438 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3071 0.0000 0.0000
3 14 2.2411 1.6177 0.0000
4 1 3.0949 1.6962 -1.2125
5 1 1.2761 2.7464 -0.0006
6 1 3.0947 1.6963 1.2126
7 6 2.0072 -1.2128 0.0005
8 1 3.0872 -1.2129 0.0010
9 6 1.2992 -2.4389 0.0005
10 7 -0.0355 -2.4201 0.0005
11 6 -0.7323 -3.5435 -0.0049
12 17 -2.4677 -3.4980 -0.0042
13 6 -0.0634 -4.7595 -0.0102
14 6 1.3430 -4.7523 -0.0090
15 7 2.0406 -5.9223 -0.0136
16 6 2.3009 -6.5277 -1.1505
17 7 1.9717 -5.9261 -2.3395
18 6 2.9484 -7.8570 -1.1489
19 6 3.2886 -8.4666 0.0606
20 6 3.8877 -9.7068 0.0621
21 6 4.1642 -10.3500 -1.1459
22 6 4.8134 -11.6794 -1.1443
23 7 5.1374 -12.2696 0.0232
24 8 5.0545 -12.2391 -2.1959
25 6 3.8286 -9.7385 -2.3553
26 6 3.2251 -8.5004 -2.3571
27 7 1.9819 -3.5841 -0.0034
28 1 -0.4849 0.8401 -0.0004
29 1 -0.6107 -5.6905 -0.0144
30 1 1.6205 -5.0219 -2.3447
31 1 2.0903 -6.4052 -3.1746
32 1 3.0784 -7.9673 0.9949
33 1 4.1474 -10.1799 0.9975
34 1 4.9453 -11.8228 0.8624
35 1 5.5628 -13.1414 0.0242
36 1 4.0429 -10.2361 -3.2897
37 1 2.9659 -8.0272 -3.2926
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001171253113.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:11:13
Heat of formation + Delta-G solvation = 54.664289 kcal
Electronic energy + Delta-G solvation = -25541.576145 eV
Core-core repulsion = 21537.913897 eV
Total energy + Delta-G solvation = -4003.662248 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 345.073 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.44889 -39.45866 -38.66847 -36.91079 -35.67020 -34.25169 -33.90082 -32.67498
-31.57379 -31.06520 -30.87132 -29.31055 -26.49121 -25.41207 -23.09455 -22.54761
-22.01847 -21.10383 -19.86717 -18.63646 -18.02293 -17.47467 -17.02505 -16.54081
-16.36943 -15.46370 -15.21901 -15.07025 -14.93989 -14.62680 -14.18414 -13.88867
-13.83739 -13.55400 -13.43642 -13.30203 -12.99665 -12.33145 -12.01362 -11.63076
-11.45913 -11.37254 -11.25924 -10.92876 -10.54056 -10.44544 -10.42333 -10.26308
-10.09204 -9.34758 -9.34013 -9.31831 -9.20145 -8.58490 -8.24247 -7.88689
-7.51316 -6.68044 -4.90706 0.24892 1.10666 2.18815 2.36836 2.53344
2.82308 2.98986 3.00617 3.03324 3.04011 3.12729 3.64273 3.70810
3.79594 4.28701 4.43139 4.47572 4.52397 4.71001 4.99402 5.17537
5.35901 5.38835 5.64787 5.78503 5.96018 5.99458 6.08150 6.14566
6.35163 6.37413 6.41745 6.53156 6.80498 6.88201 6.93908 7.03424
7.28987 7.74115 7.87502 7.99628 8.17512 8.41839 8.64189 8.82759
9.92585 10.09099
Molecular weight = 345.07amu
Principal moments of inertia in cm(-1)
A = 0.016222 B = 0.002347 C = 0.002159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1725.683063 B =11926.191183 C =12968.851132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.700 5.700
2 C 0.063 3.937
3 Si 0.922 3.078
4 H -0.262 1.262
5 H -0.275 1.275
6 H -0.262 1.262
7 C -0.388 4.388
8 H 0.097 0.903
9 C 0.412 3.588
10 N -0.512 5.512
11 C 0.257 3.743
12 Cl -0.079 7.079
13 C -0.369 4.369
14 C 0.378 3.622
15 N -0.530 5.530
16 C 0.457 3.543
17 N -0.867 5.867
18 C -0.015 4.015
19 C -0.070 4.070
20 C -0.090 4.090
21 C -0.131 4.131
22 C 0.565 3.435
23 N -0.851 5.851
24 O -0.541 6.541
25 C -0.062 4.062
26 C -0.105 4.105
27 N -0.598 5.598
28 H 0.279 0.721
29 H 0.112 0.888
30 H 0.409 0.591
31 H 0.393 0.607
32 H 0.151 0.849
33 H 0.131 0.869
34 H 0.403 0.597
35 H 0.405 0.595
36 H 0.141 0.859
37 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.364 -16.053 -2.086 17.054
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.321 5.321
2 C -0.165 4.165
3 Si 0.745 3.255
4 H -0.187 1.187
5 H -0.200 1.200
6 H -0.186 1.186
7 C -0.423 4.423
8 H 0.115 0.885
9 C 0.176 3.824
10 N -0.232 5.232
11 C 0.076 3.924
12 Cl -0.051 7.051
13 C -0.401 4.401
14 C 0.131 3.869
15 N -0.256 5.256
16 C 0.181 3.819
17 N -0.418 5.418
18 C -0.018 4.018
19 C -0.090 4.090
20 C -0.109 4.109
21 C -0.135 4.135
22 C 0.351 3.649
23 N -0.415 5.415
24 O -0.419 6.419
25 C -0.081 4.081
26 C -0.125 4.125
27 N -0.323 5.323
28 H 0.091 0.909
29 H 0.130 0.870
30 H 0.241 0.759
31 H 0.222 0.778
32 H 0.169 0.831
33 H 0.149 0.851
34 H 0.232 0.768
35 H 0.236 0.764
36 H 0.159 0.841
37 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges 5.748 -15.192 -1.829 16.345
hybrid contribution -0.743 0.374 -0.320 0.891
sum 5.005 -14.817 -2.149 15.787
Atomic orbital electron populations
1.70130 1.07261 1.28720 1.25951 1.26152 0.95108 1.01547 0.93720
0.86145 0.79885 0.79286 0.80209 1.18660 1.19979 1.18615 1.19378
0.94822 0.87276 1.40830 0.88520 1.19670 0.83740 0.90536 0.88488
1.68616 1.08209 1.25851 1.20548 1.21594 0.85647 0.90840 0.94347
1.98304 1.11319 1.98810 1.96651 1.21590 0.93714 0.97076 1.27693
1.19225 0.88338 0.89099 0.90220 1.68607 1.23535 1.11576 1.21928
1.20342 0.89042 0.90144 0.82367 1.43259 1.71859 1.19861 1.06822
1.18527 0.98051 0.91025 0.94197 1.21359 0.95210 0.93776 0.98692
1.21253 0.97773 0.94987 0.96887 1.19984 1.03606 0.95202 0.94737
1.18330 0.77558 0.85263 0.83734 1.43765 1.65000 1.24069 1.08656
1.90817 1.54338 1.65408 1.31336 1.21099 0.95194 0.93888 0.97870
1.21174 0.98926 0.95053 0.97322 1.69032 1.39738 0.97312 1.26208
0.90935 0.86974 0.75897 0.77774 0.83146 0.85075 0.76759 0.76418
0.84128 0.84874
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.70 -17.96 11.42 55.55 0.63 -17.33 16
2 C 0.06 1.54 5.50 -17.35 -0.10 1.45 16
3 Si 0.92 17.96 29.56 -169.99 -5.02 12.94 16
4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16
5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16
6 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16
7 C -0.39 -10.27 9.37 -37.63 -0.35 -10.62 16
8 H 0.10 2.45 7.85 -52.48 -0.41 2.04 16
9 C 0.41 11.32 7.37 -158.40 -1.17 10.15 16
10 N -0.51 -13.94 7.84 -9.86 -0.08 -14.01 16
11 C 0.26 6.29 7.33 -17.20 -0.13 6.16 16
12 Cl -0.08 -1.65 29.15 -51.86 -1.51 -3.16 16
13 C -0.37 -8.42 9.96 -38.47 -0.38 -8.81 16
14 C 0.38 8.74 5.32 -156.44 -0.83 7.91 16
15 N -0.53 -10.39 9.58 -9.96 -0.10 -10.48 16
16 C 0.46 7.07 7.73 -153.93 -1.19 5.88 16
17 N -0.87 -11.98 8.77 32.52 0.29 -11.69 16
18 C -0.02 -0.18 5.88 -104.91 -0.62 -0.80 16
19 C -0.07 -0.76 9.56 -39.24 -0.38 -1.14 16
20 C -0.09 -0.74 9.52 -39.25 -0.37 -1.11 16
21 C -0.13 -1.22 5.88 -104.89 -0.62 -1.83 16
22 C 0.56 5.40 8.05 -12.29 -0.10 5.30 16
23 N -0.85 -4.60 8.82 30.55 0.27 -4.33 16
24 O -0.54 -7.19 17.17 5.33 0.09 -7.10 16
25 C -0.06 -0.58 9.58 -39.25 -0.38 -0.96 16
26 C -0.10 -0.99 9.53 -39.24 -0.37 -1.37 16
27 N -0.60 -15.55 10.41 -12.18 -0.13 -15.68 16
28 H 0.28 6.48 8.29 -40.82 -0.34 6.14 16
29 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16
30 H 0.41 6.84 7.49 -40.82 -0.31 6.54 16
31 H 0.39 3.82 6.93 -40.82 -0.28 3.54 16
32 H 0.15 1.74 7.54 -52.49 -0.40 1.34 16
33 H 0.13 0.62 6.39 -52.49 -0.34 0.28 16
34 H 0.40 1.14 6.85 -40.82 -0.28 0.86 16
35 H 0.40 1.67 8.93 -40.82 -0.36 1.30 16
36 H 0.14 1.24 7.64 -52.48 -0.40 0.84 16
37 H 0.13 0.95 6.41 -52.49 -0.34 0.61 16
LS Contribution 346.98 15.07 5.23 5.23
Total: -1.00 -34.07 346.98 -9.97 -44.04
By element:
Atomic # 1 Polarization: 14.03 SS G_CDS: -2.67 Total: 11.36 kcal
Atomic # 6 Polarization: 17.19 SS G_CDS: -6.98 Total: 10.21 kcal
Atomic # 7 Polarization: -74.41 SS G_CDS: 0.89 Total: -73.52 kcal
Atomic # 8 Polarization: -7.19 SS G_CDS: 0.09 Total: -7.10 kcal
Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.94 kcal
Atomic # 17 Polarization: -1.65 SS G_CDS: -1.51 Total: -3.16 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -34.07 -9.97 -44.04 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171253113.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.706 kcal
(2) G-P(sol) polarization free energy of solvation -34.070 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.636 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.042 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.664 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds