Wall clock time and date at job start Wed Apr 1 2020 03:11:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30708 * 1
3 3 Si 1.86796 * 119.99960 * 2 1
4 4 H 1.48502 * 109.46721 * 239.99326 * 3 2 1
5 5 H 1.48499 * 109.47239 * 359.97438 * 3 2 1
6 6 H 1.48502 * 109.46841 * 119.99768 * 3 2 1
7 7 C 1.40040 * 119.99469 * 179.97438 * 2 1 3
8 8 H 1.08007 * 119.99580 * 180.02562 * 7 2 1
9 9 C 1.41583 * 120.00106 * 0.02562 * 7 2 1
10 10 N 1.33479 * 119.19737 * 359.97438 * 9 7 2
11 11 C 1.32191 * 121.00346 * 179.72253 * 10 9 7
12 12 Cl 1.73599 * 120.30863 * 179.97438 * 11 10 9
13 13 C 1.38779 * 119.37710 * 0.02562 * 11 10 9
14 14 C 1.40643 * 118.51937 * 0.02562 * 13 11 10
15 15 N 1.36223 * 120.51323 * 179.97438 * 14 13 11
16 16 C 1.31414 * 120.00118 * 85.47179 * 15 14 13
17 17 N 1.37262 * 119.99971 * 5.58852 * 16 15 14
18 18 C 1.47855 * 119.99759 * 185.59422 * 16 15 14
19 19 C 1.39649 * 120.00494 * 359.72086 * 18 16 15
20 20 C 1.37737 * 119.99862 * 179.78896 * 19 18 16
21 21 C 1.39627 * 119.99923 * 0.48674 * 20 19 18
22 22 C 1.47939 * 119.99219 * 179.71898 * 21 20 19
23 23 N 1.34774 * 120.00199 * 0.02652 * 22 21 20
24 24 O 1.21544 * 119.99587 * 180.02562 * 22 21 20
25 25 C 1.39614 * 120.00719 * 359.74687 * 21 20 19
26 26 C 1.37734 * 120.00842 * 0.02562 * 25 21 20
27 27 N 1.33151 * 118.96949 * 359.97438 * 14 13 11
28 28 H 0.96997 * 119.99477 * 0.02562 * 1 2 3
29 29 H 1.07997 * 120.74060 * 179.97438 * 13 11 10
30 30 H 0.96999 * 120.00479 * 5.48900 * 17 16 15
31 31 H 0.97003 * 119.99577 * 185.48108 * 17 16 15
32 32 H 1.08000 * 120.00496 * 0.02562 * 19 18 16
33 33 H 1.07996 * 120.00319 * 180.23284 * 20 19 18
34 34 H 0.96997 * 120.00200 * 359.97438 * 23 22 21
35 35 H 0.97003 * 119.99845 * 179.97438 * 23 22 21
36 36 H 1.08008 * 119.99517 * 179.97438 * 25 21 20
37 37 H 1.07997 * 120.00960 * 179.97438 * 26 25 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3071 0.0000 0.0000
3 14 2.2411 1.6177 0.0000
4 1 3.0949 1.6962 -1.2125
5 1 1.2761 2.7464 -0.0006
6 1 3.0947 1.6963 1.2126
7 6 2.0072 -1.2128 0.0005
8 1 3.0872 -1.2129 0.0010
9 6 1.2992 -2.4389 0.0005
10 7 -0.0355 -2.4201 0.0005
11 6 -0.7323 -3.5435 -0.0049
12 17 -2.4677 -3.4980 -0.0042
13 6 -0.0634 -4.7595 -0.0102
14 6 1.3430 -4.7523 -0.0090
15 7 2.0406 -5.9223 -0.0136
16 6 2.3009 -6.5277 -1.1505
17 7 1.9717 -5.9261 -2.3395
18 6 2.9484 -7.8570 -1.1489
19 6 3.2886 -8.4666 0.0606
20 6 3.8877 -9.7068 0.0621
21 6 4.1642 -10.3500 -1.1459
22 6 4.8134 -11.6794 -1.1443
23 7 5.1374 -12.2696 0.0232
24 8 5.0545 -12.2391 -2.1959
25 6 3.8286 -9.7385 -2.3553
26 6 3.2251 -8.5004 -2.3571
27 7 1.9819 -3.5841 -0.0034
28 1 -0.4849 0.8401 -0.0004
29 1 -0.6107 -5.6905 -0.0144
30 1 1.6205 -5.0219 -2.3447
31 1 2.0903 -6.4052 -3.1746
32 1 3.0784 -7.9673 0.9949
33 1 4.1474 -10.1799 0.9975
34 1 4.9453 -11.8228 0.8624
35 1 5.5628 -13.1414 0.0242
36 1 4.0429 -10.2361 -3.2897
37 1 2.9659 -8.0272 -3.2926
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001171253113.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:11:12
Heat of formation + Delta-G solvation = 29.699727 kcal
Electronic energy + Delta-G solvation = -25542.658689 eV
Core-core repulsion = 21537.913897 eV
Total energy + Delta-G solvation = -4004.744793 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 345.073 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.35896 -40.98838 -39.74912 -38.15642 -37.43225 -35.71730 -34.89954 -34.19746
-32.95912 -32.37962 -31.73125 -30.87957 -28.37832 -26.47572 -24.29614 -23.89004
-23.46268 -22.15313 -21.03754 -19.58653 -19.38629 -18.50936 -18.37434 -18.03801
-17.63933 -16.83936 -16.36668 -16.05927 -15.84304 -15.81286 -15.52865 -15.45390
-15.22211 -14.84101 -14.65411 -14.41280 -14.25233 -13.36837 -13.32451 -13.13084
-13.04131 -12.85107 -12.82710 -12.21849 -12.10274 -12.04548 -11.92096 -11.23312
-11.15468 -11.08446 -10.71768 -10.40852 -10.12395 -10.04246 -9.80829 -9.58592
-9.24859 -8.50151 -6.85944 -0.61845 0.35648 0.52223 0.73941 1.00132
1.27295 1.40194 1.50843 1.54368 1.99897 2.18077 2.46802 2.51777
2.66110 2.86910 3.06020 3.70114 3.78717 3.79761 3.95507 4.06264
4.23412 4.25884 4.41794 4.54875 4.63396 4.69657 4.96894 5.01718
5.08967 5.19073 5.22892 5.31555 5.43568 5.72518 5.81046 5.88999
6.04832 6.29869 6.40674 6.54762 6.66800 6.96043 7.18806 7.27694
8.05347 8.28846
Molecular weight = 345.07amu
Principal moments of inertia in cm(-1)
A = 0.016222 B = 0.002347 C = 0.002159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1725.683063 B =11926.191183 C =12968.851132
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.736 5.736
2 C 0.024 3.976
3 Si 1.000 3.000
4 H -0.255 1.255
5 H -0.263 1.263
6 H -0.259 1.259
7 C -0.421 4.421
8 H 0.095 0.905
9 C 0.388 3.612
10 N -0.543 5.543
11 C 0.240 3.760
12 Cl -0.054 7.054
13 C -0.368 4.368
14 C 0.389 3.611
15 N -0.572 5.572
16 C 0.477 3.523
17 N -0.856 5.856
18 C -0.041 4.041
19 C -0.076 4.076
20 C -0.076 4.076
21 C -0.128 4.128
22 C 0.563 3.437
23 N -0.828 5.828
24 O -0.584 6.584
25 C -0.068 4.068
26 C -0.091 4.091
27 N -0.627 5.627
28 H 0.287 0.713
29 H 0.128 0.872
30 H 0.397 0.603
31 H 0.414 0.586
32 H 0.140 0.860
33 H 0.169 0.831
34 H 0.418 0.582
35 H 0.414 0.586
36 H 0.147 0.853
37 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.334 -17.407 -2.265 18.661
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.357 5.357
2 C -0.201 4.201
3 Si 0.819 3.181
4 H -0.179 1.179
5 H -0.187 1.187
6 H -0.183 1.183
7 C -0.455 4.455
8 H 0.113 0.887
9 C 0.152 3.848
10 N -0.265 5.265
11 C 0.060 3.940
12 Cl -0.026 7.026
13 C -0.399 4.399
14 C 0.142 3.858
15 N -0.301 5.301
16 C 0.203 3.797
17 N -0.406 5.406
18 C -0.044 4.044
19 C -0.096 4.096
20 C -0.094 4.094
21 C -0.132 4.132
22 C 0.349 3.651
23 N -0.393 5.393
24 O -0.465 6.465
25 C -0.087 4.087
26 C -0.111 4.111
27 N -0.352 5.352
28 H 0.098 0.902
29 H 0.146 0.854
30 H 0.227 0.773
31 H 0.247 0.753
32 H 0.158 0.842
33 H 0.186 0.814
34 H 0.250 0.750
35 H 0.247 0.753
36 H 0.165 0.835
37 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges 6.709 -16.636 -2.018 18.051
hybrid contribution -1.022 0.472 -0.294 1.164
sum 5.687 -16.163 -2.312 17.290
Atomic orbital electron populations
1.70203 1.08897 1.30142 1.26429 1.27086 0.95893 1.04660 0.92464
0.84987 0.78477 0.74331 0.80298 1.17940 1.18664 1.18304 1.19698
0.94987 0.88351 1.42509 0.88744 1.20058 0.84369 0.91503 0.88916
1.68617 1.08406 1.27067 1.22402 1.22002 0.86910 0.90991 0.94054
1.98293 1.09047 1.98784 1.96522 1.21824 0.94131 0.97065 1.26913
1.19547 0.88690 0.89433 0.88120 1.68500 1.27268 1.10879 1.23473
1.20858 0.86658 0.90579 0.81644 1.43283 1.70446 1.19216 1.07617
1.18521 1.00176 0.89895 0.95791 1.21396 0.95602 0.94697 0.97939
1.21500 0.96092 0.93705 0.98116 1.20160 1.02814 0.95157 0.95102
1.18380 0.77414 0.85203 0.84089 1.43615 1.63287 1.24188 1.08177
1.90807 1.56320 1.66360 1.32996 1.21260 0.95106 0.93815 0.98487
1.21312 0.97766 0.94792 0.97243 1.69055 1.40375 0.98038 1.27754
0.90204 0.85427 0.77349 0.75338 0.84186 0.81351 0.74980 0.75330
0.83483 0.82702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.74 -38.56 11.42 21.84 0.25 -38.32 16
2 C 0.02 1.19 5.50 85.30 0.47 1.65 16
3 Si 1.00 36.97 29.56 68.60 2.03 39.00 16
4 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16
5 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16
6 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16
7 C -0.42 -23.03 9.37 23.53 0.22 -22.81 16
8 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16
9 C 0.39 22.18 7.37 135.18 1.00 23.18 16
10 N -0.54 -30.57 7.84 -185.10 -1.45 -32.02 16
11 C 0.24 12.00 7.33 84.77 0.62 12.63 16
12 Cl -0.05 -2.29 29.15 -2.72 -0.08 -2.37 16
13 C -0.37 -17.05 9.96 22.99 0.23 -16.82 16
14 C 0.39 18.38 5.32 134.13 0.71 19.09 16
15 N -0.57 -22.60 9.58 -185.43 -1.78 -24.38 16
16 C 0.48 14.49 7.73 136.27 1.05 15.55 16
17 N -0.86 -23.08 8.77 -51.02 -0.45 -23.53 16
18 C -0.04 -0.93 5.88 -20.05 -0.12 -1.04 16
19 C -0.08 -1.53 9.56 22.49 0.22 -1.31 16
20 C -0.08 -1.02 9.52 22.49 0.21 -0.81 16
21 C -0.13 -2.04 5.88 -20.04 -0.12 -2.16 16
22 C 0.56 9.38 8.05 86.81 0.70 10.08 16
23 N -0.83 -6.34 8.82 -175.54 -1.55 -7.89 16
24 O -0.58 -14.62 17.17 -3.85 -0.07 -14.69 16
25 C -0.07 -1.13 9.58 22.48 0.22 -0.92 16
26 C -0.09 -1.53 9.53 22.49 0.21 -1.32 16
27 N -0.63 -33.71 10.41 -192.46 -2.00 -35.71 16
28 H 0.29 13.49 8.29 -92.71 -0.77 12.72 16
29 H 0.13 5.36 8.06 -2.91 -0.02 5.34 16
30 H 0.40 13.38 7.49 -92.71 -0.69 12.68 16
31 H 0.41 7.37 6.93 -92.71 -0.64 6.73 16
32 H 0.14 3.14 7.54 -2.91 -0.02 3.12 16
33 H 0.17 0.90 6.39 -2.91 -0.02 0.88 16
34 H 0.42 0.73 6.85 -92.71 -0.63 0.10 16
35 H 0.41 2.20 8.93 -92.71 -0.83 1.37 16
36 H 0.15 2.31 7.64 -2.91 -0.02 2.28 16
37 H 0.16 1.79 6.41 -2.91 -0.02 1.77 16
Total: -1.00 -77.29 346.98 -1.05 -78.34
By element:
Atomic # 1 Polarization: 28.15 SS G_CDS: -1.57 Total: 26.58 kcal
Atomic # 6 Polarization: 29.36 SS G_CDS: 5.62 Total: 34.99 kcal
Atomic # 7 Polarization: -154.87 SS G_CDS: -6.98 Total: -161.85 kcal
Atomic # 8 Polarization: -14.62 SS G_CDS: -0.07 Total: -14.69 kcal
Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal
Atomic # 17 Polarization: -2.29 SS G_CDS: -0.08 Total: -2.37 kcal
Total: -77.29 -1.05 -78.34 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001171253113.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.042 kcal
(2) G-P(sol) polarization free energy of solvation -77.294 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.748 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.048 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds