Wall clock time and date at job start Wed Apr 1 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00451 * 2 1 4 4 H 1.48501 * 109.47075 * 89.99969 * 3 2 1 5 5 H 1.48499 * 109.47274 * 210.00146 * 3 2 1 6 6 H 1.48499 * 109.46918 * 330.00562 * 3 2 1 7 7 C 1.37883 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00145 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.39873 * 293.53691 * 9 7 2 11 11 O 1.42099 * 106.40403 * 66.45706 * 9 7 2 12 12 N 1.65595 * 107.21827 * 179.97438 * 9 7 2 13 13 C 1.39958 * 120.00111 * 67.61195 * 12 9 7 14 14 C 1.38723 * 120.07979 * 327.63866 * 13 12 9 15 15 C 1.38399 * 119.96080 * 179.69907 * 14 13 12 16 16 F 1.35098 * 119.94942 * 180.31900 * 15 14 13 17 17 C 1.38460 * 120.10765 * 0.57075 * 15 14 13 18 18 C 1.38289 * 120.15313 * 359.72560 * 17 15 14 19 19 C 1.38478 * 120.04197 * 359.97438 * 18 17 15 20 20 O 1.36060 * 120.05570 * 179.97438 * 19 18 17 21 21 C 1.42893 * 116.99961 * 0.02562 * 20 19 18 22 22 C 1.52999 * 109.47200 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.82469 * 305.56819 * 22 21 20 24 24 C 1.54379 * 109.83028 * 184.58887 * 22 21 20 25 25 C 1.55313 * 102.25256 * 219.12719 * 24 22 21 26 26 C 1.54946 * 100.93674 * 34.13318 * 25 24 22 27 27 O 1.43229 * 109.83182 * 66.45307 * 22 21 20 28 28 H 0.96998 * 119.99579 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99987 * 247.61889 * 12 9 7 30 30 H 1.08006 * 120.01939 * 359.97438 * 14 13 12 31 31 H 1.07998 * 119.92125 * 179.74821 * 17 15 14 32 32 H 1.08000 * 119.98253 * 180.02562 * 18 17 15 33 33 H 1.08995 * 109.47158 * 300.00284 * 21 20 19 34 34 H 1.08998 * 109.47007 * 60.00371 * 21 20 19 35 35 H 1.08999 * 110.85284 * 337.31994 * 24 22 21 36 36 H 1.08999 * 110.85010 * 100.94200 * 24 22 21 37 37 H 1.09000 * 111.12240 * 276.21817 * 25 24 22 38 38 H 1.09000 * 111.12431 * 152.05368 * 25 24 22 39 39 H 1.09006 * 110.30446 * 204.63599 * 26 25 24 40 40 H 1.08993 * 110.39303 * 82.51653 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7201 -0.0019 10 8 0.4509 -2.7961 1.2476 11 8 0.4517 -2.7945 -1.2519 12 7 2.2481 -3.9355 -0.0030 13 6 3.0622 -4.1366 1.1175 14 6 3.4480 -3.0576 1.8993 15 6 4.2480 -3.2600 3.0104 16 9 4.6183 -2.2098 3.7752 17 6 4.6738 -4.5366 3.3364 18 6 4.2969 -5.6148 2.5568 19 6 3.4915 -5.4202 1.4472 20 8 3.1211 -6.4808 0.6797 21 6 3.5989 -7.7675 1.0770 22 6 3.0833 -8.8268 0.1008 23 1 1.9975 -8.7649 0.0277 24 6 3.4982 -10.2324 0.5862 25 6 3.8640 -10.9457 -0.7441 26 6 4.4587 -9.7674 -1.5557 27 8 3.6695 -8.6242 -1.1902 28 1 -0.4849 0.8401 -0.0004 29 1 2.3427 -4.5080 -0.7803 30 1 3.1207 -2.0606 1.6436 31 1 5.3013 -4.6906 4.2017 32 1 4.6303 -6.6094 2.8138 33 1 4.6888 -7.7681 1.0710 34 1 3.2410 -7.9937 2.0814 35 1 4.3636 -10.1751 1.2464 36 1 2.6655 -10.7341 1.0790 37 1 2.9759 -11.3492 -1.2305 38 1 4.6082 -11.7251 -0.5801 39 1 4.3707 -9.9619 -2.6246 40 1 5.5026 -9.6086 -1.2854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:07 Heat of formation + Delta-G solvation = -192.140871 kcal Electronic energy + Delta-G solvation = -28405.509502 eV Core-core repulsion = 24033.667053 eV Total energy + Delta-G solvation = -4371.842449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.45015 -40.30577 -39.45794 -37.14267 -35.32859 -34.37844 -34.07768 -33.17980 -32.55027 -31.20370 -29.68163 -28.25158 -26.37334 -26.00808 -22.92991 -22.27128 -21.79761 -21.18524 -19.06982 -18.34413 -17.65164 -17.60454 -17.24673 -16.65114 -16.30624 -15.83453 -15.58036 -15.26694 -15.08629 -14.98290 -14.69759 -14.39687 -14.10526 -13.92014 -13.61752 -13.45923 -12.99510 -12.86939 -12.40616 -12.14512 -12.06888 -12.01406 -11.71186 -11.64416 -11.48115 -11.25460 -11.23258 -10.95407 -10.84170 -10.61644 -10.54380 -10.41200 -10.29655 -10.20463 -9.75592 -9.29049 -8.90484 -8.35424 -7.48446 -6.77364 -5.42189 1.45038 1.50839 2.11731 3.06549 3.08094 3.13480 3.19981 3.56597 3.83511 4.00735 4.07212 4.34328 4.39228 4.50036 4.56748 4.70138 4.78205 4.83782 4.92751 4.96563 5.03524 5.16689 5.22019 5.29222 5.37041 5.43251 5.48987 5.56085 5.59810 5.72188 5.79220 5.97831 6.12056 6.29301 6.38990 6.48857 6.71978 6.76884 7.02777 7.23990 7.48158 7.79474 7.85535 8.79761 10.16643 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003476 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.514930 B = 8053.327975 C = 9363.516499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.135 3.865 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.274 1.274 7 C -1.025 5.025 8 H 0.110 0.890 9 S 2.701 3.299 10 O -0.989 6.989 11 O -0.994 6.994 12 N -1.060 6.060 13 C 0.205 3.795 14 C -0.175 4.175 15 C 0.099 3.901 16 F -0.139 7.139 17 C -0.151 4.151 18 C -0.161 4.161 19 C 0.080 3.920 20 O -0.300 6.300 21 C 0.050 3.950 22 C 0.081 3.919 23 H 0.094 0.906 24 C -0.147 4.147 25 C -0.156 4.156 26 C 0.045 3.955 27 O -0.365 6.365 28 H 0.293 0.707 29 H 0.419 0.581 30 H 0.179 0.821 31 H 0.134 0.866 32 H 0.134 0.866 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.266 -18.733 3.172 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.084 4.084 3 Si 0.744 3.256 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.199 1.199 7 C -1.158 5.158 8 H 0.128 0.872 9 S 2.801 3.199 10 O -0.979 6.979 11 O -0.984 6.984 12 N -0.801 5.801 13 C 0.105 3.895 14 C -0.197 4.197 15 C 0.079 3.921 16 F -0.117 7.117 17 C -0.172 4.172 18 C -0.181 4.181 19 C 0.032 3.968 20 O -0.213 6.213 21 C -0.026 4.026 22 C 0.023 3.977 23 H 0.112 0.888 24 C -0.185 4.185 25 C -0.193 4.193 26 C -0.031 4.031 27 O -0.284 6.284 28 H 0.104 0.896 29 H 0.253 0.747 30 H 0.196 0.804 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.905 -18.468 2.960 21.165 hybrid contribution 1.246 0.783 0.103 1.475 sum 11.151 -17.685 3.063 21.130 Atomic orbital electron populations 1.69887 1.06848 1.31051 1.39046 1.24748 0.94495 1.00871 0.88274 0.86139 0.80235 0.79738 0.79465 1.18870 1.18411 1.19853 1.30570 1.06232 1.11388 1.67606 0.87159 1.01106 0.72168 0.73393 0.73217 1.93409 1.72016 1.87078 1.45372 1.93398 1.72374 1.87278 1.45381 1.54190 1.52753 1.51983 1.21194 1.16397 0.93967 0.89543 0.89627 1.21731 1.00207 1.01573 0.96184 1.17171 0.99571 0.83852 0.91504 1.91478 1.89956 1.56211 1.74085 1.20717 1.03849 0.90688 1.01912 1.20745 1.01820 0.99488 0.96034 1.18752 0.99152 0.86486 0.92446 1.86123 1.70584 1.13670 1.50963 1.23233 0.99264 0.82030 0.98058 1.22803 0.99114 0.92395 0.83378 0.88808 1.23102 1.02835 0.94142 0.98428 1.23277 1.02051 0.98513 0.95471 1.23432 0.95031 0.84674 0.99986 1.88594 1.66294 1.39958 1.33554 0.89626 0.74664 0.80374 0.84834 0.84815 0.91669 0.90980 0.90081 0.89307 0.90061 0.89728 0.89541 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.35 13.19 55.43 0.73 -23.62 16 2 C 0.14 3.71 5.46 -17.82 -0.10 3.62 16 3 Si 0.92 20.37 29.54 -169.99 -5.02 15.35 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -1.02 -27.73 7.57 30.60 0.23 -27.50 16 8 H 0.11 2.71 6.92 -52.49 -0.36 2.35 16 9 S 2.70 72.81 4.63 -107.50 -0.50 72.32 16 10 O -0.99 -29.15 17.43 -57.17 -1.00 -30.15 16 11 O -0.99 -29.34 18.02 -57.17 -1.03 -30.37 16 12 N -1.06 -22.97 5.68 32.51 0.18 -22.78 16 13 C 0.20 4.12 6.22 -83.57 -0.52 3.60 16 14 C -0.18 -3.58 8.89 -39.34 -0.35 -3.93 16 15 C 0.10 1.76 7.29 -39.44 -0.29 1.47 16 16 F -0.14 -2.47 17.26 2.25 0.04 -2.43 16 17 C -0.15 -2.17 10.02 -39.48 -0.40 -2.56 16 18 C -0.16 -2.21 9.03 -39.47 -0.36 -2.57 16 19 C 0.08 1.36 6.70 -39.10 -0.26 1.10 16 20 O -0.30 -4.72 9.64 -22.50 -0.22 -4.93 16 21 C 0.05 0.54 4.27 37.16 0.16 0.70 16 22 C 0.08 0.81 3.81 -26.01 -0.10 0.71 16 23 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 24 C -0.15 -0.92 6.54 -24.78 -0.16 -1.08 16 25 C -0.16 -0.91 7.16 -24.48 -0.18 -1.08 16 26 C 0.05 0.37 7.78 38.18 0.30 0.66 16 27 O -0.36 -4.45 11.00 -37.80 -0.42 -4.86 16 28 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.42 8.13 8.63 -34.46 -0.30 7.83 16 30 H 0.18 4.00 4.49 -52.48 -0.24 3.76 16 31 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.13 1.32 6.29 -52.49 -0.33 0.99 16 33 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.07 0.63 7.66 -51.93 -0.40 0.24 16 35 H 0.08 0.41 7.85 -51.93 -0.41 0.01 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -35.90 353.18 -8.44 -44.34 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -4.52 Total: 8.68 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: -2.02 Total: -26.87 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.92 Total: -46.40 kcal Atomic # 8 Polarization: -67.65 SS G_CDS: -2.66 Total: -70.31 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 72.81 SS G_CDS: -0.50 Total: 72.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.90 -8.44 -44.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.796 kcal (2) G-P(sol) polarization free energy of solvation -35.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds