Wall clock time and date at job start Wed Apr 1 2020 03:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00451 * 2 1 4 4 H 1.48501 * 109.47075 * 89.99969 * 3 2 1 5 5 H 1.48499 * 109.47274 * 210.00146 * 3 2 1 6 6 H 1.48499 * 109.46918 * 330.00562 * 3 2 1 7 7 C 1.37883 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99758 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00145 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.39873 * 293.53691 * 9 7 2 11 11 O 1.42099 * 106.40403 * 66.45706 * 9 7 2 12 12 N 1.65595 * 107.21827 * 179.97438 * 9 7 2 13 13 C 1.39958 * 120.00111 * 67.61195 * 12 9 7 14 14 C 1.38723 * 120.07979 * 327.63866 * 13 12 9 15 15 C 1.38399 * 119.96080 * 179.69907 * 14 13 12 16 16 F 1.35098 * 119.94942 * 180.31900 * 15 14 13 17 17 C 1.38460 * 120.10765 * 0.57075 * 15 14 13 18 18 C 1.38289 * 120.15313 * 359.72560 * 17 15 14 19 19 C 1.38478 * 120.04197 * 359.97438 * 18 17 15 20 20 O 1.36060 * 120.05570 * 179.97438 * 19 18 17 21 21 C 1.42893 * 116.99961 * 0.02562 * 20 19 18 22 22 C 1.52999 * 109.47200 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.82469 * 305.56819 * 22 21 20 24 24 C 1.54379 * 109.83028 * 184.58887 * 22 21 20 25 25 C 1.55313 * 102.25256 * 219.12719 * 24 22 21 26 26 C 1.54946 * 100.93674 * 34.13318 * 25 24 22 27 27 O 1.43229 * 109.83182 * 66.45307 * 22 21 20 28 28 H 0.96998 * 119.99579 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99987 * 247.61889 * 12 9 7 30 30 H 1.08006 * 120.01939 * 359.97438 * 14 13 12 31 31 H 1.07998 * 119.92125 * 179.74821 * 17 15 14 32 32 H 1.08000 * 119.98253 * 180.02562 * 18 17 15 33 33 H 1.08995 * 109.47158 * 300.00284 * 21 20 19 34 34 H 1.08998 * 109.47007 * 60.00371 * 21 20 19 35 35 H 1.08999 * 110.85284 * 337.31994 * 24 22 21 36 36 H 1.08999 * 110.85010 * 100.94200 * 24 22 21 37 37 H 1.09000 * 111.12240 * 276.21817 * 25 24 22 38 38 H 1.09000 * 111.12431 * 152.05368 * 25 24 22 39 39 H 1.09006 * 110.30446 * 204.63599 * 26 25 24 40 40 H 1.08993 * 110.39303 * 82.51653 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 1.4001 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 16 1.1234 -2.7201 -0.0019 10 8 0.4509 -2.7961 1.2476 11 8 0.4517 -2.7945 -1.2519 12 7 2.2481 -3.9355 -0.0030 13 6 3.0622 -4.1366 1.1175 14 6 3.4480 -3.0576 1.8993 15 6 4.2480 -3.2600 3.0104 16 9 4.6183 -2.2098 3.7752 17 6 4.6738 -4.5366 3.3364 18 6 4.2969 -5.6148 2.5568 19 6 3.4915 -5.4202 1.4472 20 8 3.1211 -6.4808 0.6797 21 6 3.5989 -7.7675 1.0770 22 6 3.0833 -8.8268 0.1008 23 1 1.9975 -8.7649 0.0277 24 6 3.4982 -10.2324 0.5862 25 6 3.8640 -10.9457 -0.7441 26 6 4.4587 -9.7674 -1.5557 27 8 3.6695 -8.6242 -1.1902 28 1 -0.4849 0.8401 -0.0004 29 1 2.3427 -4.5080 -0.7803 30 1 3.1207 -2.0606 1.6436 31 1 5.3013 -4.6906 4.2017 32 1 4.6303 -6.6094 2.8138 33 1 4.6888 -7.7681 1.0710 34 1 3.2410 -7.9937 2.0814 35 1 4.3636 -10.1751 1.2464 36 1 2.6655 -10.7341 1.0790 37 1 2.9759 -11.3492 -1.2305 38 1 4.6082 -11.7251 -0.5801 39 1 4.3707 -9.9619 -2.6246 40 1 5.5026 -9.6086 -1.2854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:07 Heat of formation + Delta-G solvation = -220.452435 kcal Electronic energy + Delta-G solvation = -28406.737184 eV Core-core repulsion = 24033.667053 eV Total energy + Delta-G solvation = -4373.070130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.80778 -41.40749 -40.31597 -38.38382 -37.52280 -36.32707 -35.90771 -35.25904 -33.18869 -31.97148 -31.03422 -29.53818 -28.43216 -26.84766 -24.14135 -23.40392 -22.55529 -22.00991 -21.03311 -19.91172 -19.35132 -18.78281 -18.47147 -18.03921 -17.60307 -17.05194 -16.82685 -16.70377 -16.58985 -16.23810 -16.05456 -15.82931 -15.78543 -15.30050 -14.70607 -14.38507 -14.23473 -14.06662 -13.96807 -13.66173 -13.30119 -13.13074 -13.04939 -12.90790 -12.67089 -12.64622 -12.59475 -12.33837 -12.32611 -12.24507 -12.09810 -11.81627 -11.71764 -11.62720 -11.28446 -10.98228 -10.50330 -9.75719 -8.90338 -8.77693 -7.57858 0.01064 0.15091 0.25184 1.31806 1.33259 1.49289 2.06426 2.16132 2.50380 2.52434 2.64009 2.91522 3.32570 3.53414 3.55303 3.64814 3.84190 3.85968 3.95982 4.11444 4.14761 4.17259 4.24490 4.30238 4.41137 4.42412 4.61332 4.72185 4.81659 4.82841 4.91848 4.95452 5.02205 5.05415 5.12771 5.18544 5.23775 5.26814 5.70031 5.78779 6.04575 6.11528 6.44567 6.68509 8.14176 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014228 B = 0.003476 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.514930 B = 8053.327975 C = 9363.516499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.990 3.010 4 H -0.252 1.252 5 H -0.247 1.247 6 H -0.259 1.259 7 C -1.036 5.036 8 H 0.126 0.874 9 S 2.709 3.291 10 O -1.026 7.026 11 O -1.033 7.033 12 N -1.051 6.051 13 C 0.160 3.840 14 C -0.203 4.203 15 C 0.079 3.921 16 F -0.143 7.143 17 C -0.123 4.123 18 C -0.144 4.144 19 C 0.086 3.914 20 O -0.324 6.324 21 C 0.038 3.962 22 C 0.072 3.928 23 H 0.076 0.924 24 C -0.137 4.137 25 C -0.149 4.149 26 C 0.034 3.966 27 O -0.405 6.405 28 H 0.302 0.698 29 H 0.426 0.574 30 H 0.149 0.851 31 H 0.180 0.820 32 H 0.186 0.814 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.318 -20.768 5.006 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.171 1.171 6 H -0.183 1.183 7 C -1.170 5.170 8 H 0.144 0.856 9 S 2.811 3.189 10 O -1.015 7.015 11 O -1.023 7.023 12 N -0.798 5.798 13 C 0.061 3.939 14 C -0.225 4.225 15 C 0.059 3.941 16 F -0.122 7.122 17 C -0.142 4.142 18 C -0.163 4.163 19 C 0.037 3.963 20 O -0.238 6.238 21 C -0.036 4.036 22 C 0.014 3.986 23 H 0.094 0.906 24 C -0.175 4.175 25 C -0.186 4.186 26 C -0.041 4.041 27 O -0.325 6.325 28 H 0.112 0.888 29 H 0.262 0.738 30 H 0.166 0.834 31 H 0.197 0.803 32 H 0.203 0.797 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.127 0.873 39 H 0.105 0.895 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.957 -20.548 4.798 24.761 hybrid contribution 0.372 1.213 -0.447 1.345 sum 13.328 -19.335 4.351 23.883 Atomic orbital electron populations 1.69974 1.08759 1.32676 1.40444 1.26006 0.95395 1.05207 0.87291 0.85134 0.79203 0.74640 0.80320 1.17627 1.17054 1.18258 1.30818 1.07104 1.11635 1.67421 0.85603 1.00483 0.72517 0.74077 0.71858 1.93342 1.73800 1.87850 1.46552 1.93331 1.74237 1.88111 1.46614 1.53420 1.52674 1.51094 1.22587 1.16667 0.95876 0.91438 0.89871 1.21602 1.02150 1.00555 0.98163 1.17385 1.00207 0.85306 0.91182 1.91459 1.89983 1.56791 1.73991 1.21221 1.01968 0.88747 1.02281 1.21294 0.99493 1.01676 0.93797 1.18856 0.98702 0.85630 0.93096 1.86126 1.71067 1.15125 1.51481 1.23681 1.00558 0.79750 0.99623 1.22962 0.98221 0.94472 0.82943 0.90587 1.23119 1.04129 0.91431 0.98802 1.23276 1.02489 0.98092 0.94763 1.23655 0.95238 0.84669 1.00585 1.88556 1.67022 1.42072 1.34822 0.88750 0.73831 0.83398 0.80311 0.79692 0.89717 0.88203 0.88059 0.87858 0.90267 0.87307 0.89523 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.44 13.19 21.45 0.28 -53.16 16 2 C 0.08 4.22 5.46 84.66 0.46 4.69 16 3 Si 0.99 41.94 29.54 68.60 2.03 43.97 16 4 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 5 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 7 C -1.04 -58.34 7.57 67.74 0.51 -57.83 16 8 H 0.13 6.44 6.92 -2.91 -0.02 6.42 16 9 S 2.71 154.31 4.63 -56.49 -0.26 154.05 16 10 O -1.03 -64.03 17.43 -128.00 -2.23 -66.26 16 11 O -1.03 -64.52 18.02 -128.00 -2.31 -66.82 16 12 N -1.05 -47.94 5.68 -51.06 -0.29 -48.23 16 13 C 0.16 6.57 6.22 38.22 0.24 6.80 16 14 C -0.20 -8.51 8.89 22.42 0.20 -8.31 16 15 C 0.08 2.72 7.29 22.36 0.16 2.88 16 16 F -0.14 -4.99 17.26 44.97 0.78 -4.22 16 17 C -0.12 -3.00 10.02 22.33 0.22 -2.78 16 18 C -0.14 -3.31 9.03 22.34 0.20 -3.11 16 19 C 0.09 2.79 6.70 22.58 0.15 2.94 16 20 O -0.32 -9.82 9.64 -91.77 -0.88 -10.70 16 21 C 0.04 0.72 4.27 71.98 0.31 1.02 16 22 C 0.07 1.32 3.81 31.06 0.12 1.44 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 24 C -0.14 -1.25 6.54 31.86 0.21 -1.04 16 25 C -0.15 -1.33 7.16 32.05 0.23 -1.10 16 26 C 0.03 0.50 7.78 72.65 0.56 1.07 16 27 O -0.40 -9.64 11.00 -146.52 -1.61 -11.25 16 28 H 0.30 16.24 8.31 -92.71 -0.77 15.47 16 29 H 0.43 17.57 8.63 -96.75 -0.83 16.74 16 30 H 0.15 7.04 4.49 -2.91 -0.01 7.02 16 31 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.19 2.37 6.29 -2.91 -0.02 2.35 16 33 H 0.08 1.25 7.66 -2.39 -0.02 1.23 16 34 H 0.10 1.30 7.66 -2.39 -0.02 1.28 16 35 H 0.10 0.53 7.85 -2.39 -0.02 0.51 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -84.19 353.18 -0.65 -84.84 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.27 Total: 31.09 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 3.58 Total: -53.32 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -0.01 Total: -101.39 kcal Atomic # 8 Polarization: -148.00 SS G_CDS: -7.03 Total: -155.03 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.78 Total: -4.22 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 154.31 SS G_CDS: -0.26 Total: 154.05 kcal Total: -84.19 -0.65 -84.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.610 kcal (2) G-P(sol) polarization free energy of solvation -84.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds