Wall clock time and date at job start Wed Apr 1 2020 03:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00051 * 2 1 4 4 H 1.48508 * 109.47437 * 240.00227 * 3 2 1 5 5 H 1.48503 * 109.47347 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47163 * 120.00119 * 3 2 1 7 7 C 1.37871 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00391 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00117 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40079 * 66.46191 * 9 7 2 11 11 O 1.42098 * 106.40395 * 293.54341 * 9 7 2 12 12 N 1.65608 * 107.22076 * 180.02562 * 9 7 2 13 13 C 1.40144 * 119.99501 * 64.62990 * 12 9 7 14 14 C 1.38905 * 120.09891 * 58.98069 * 13 12 9 15 15 F 1.35097 * 120.02668 * 0.25101 * 14 13 12 16 16 C 1.38375 * 119.94580 * 179.97438 * 14 13 12 17 17 C 1.38276 * 120.13624 * 359.97438 * 16 14 13 18 18 C 1.38248 * 120.18927 * 0.04518 * 17 16 14 19 19 C 1.38572 * 120.05468 * 359.97241 * 18 17 16 20 20 O 1.36018 * 120.06836 * 179.97438 * 19 18 17 21 21 C 1.42898 * 116.99989 * 0.02562 * 20 19 18 22 22 C 1.52995 * 109.47042 * 180.02562 * 21 20 19 23 23 H 1.09005 * 109.82594 * 305.56521 * 22 21 20 24 24 C 1.54383 * 109.83077 * 184.58873 * 22 21 20 25 25 C 1.55302 * 102.25325 * 219.12726 * 24 22 21 26 26 C 1.54943 * 100.94220 * 34.13174 * 25 24 22 27 27 O 1.43236 * 109.83517 * 66.45378 * 22 21 20 28 28 H 0.97003 * 120.00062 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99593 * 244.63364 * 12 9 7 30 30 H 1.08005 * 119.93028 * 180.02562 * 16 14 13 31 31 H 1.08005 * 119.90895 * 180.02562 * 17 16 14 32 32 H 1.08005 * 119.97717 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.46835 * 299.99936 * 21 20 19 34 34 H 1.08995 * 109.46901 * 59.99962 * 21 20 19 35 35 H 1.08995 * 110.84401 * 337.31811 * 24 22 21 36 36 H 1.08999 * 110.85011 * 100.93796 * 24 22 21 37 37 H 1.09000 * 111.12820 * 276.21652 * 25 24 22 38 38 H 1.09002 * 111.12922 * 152.05119 * 25 24 22 39 39 H 1.09008 * 110.31309 * 204.63960 * 26 25 24 40 40 H 1.09000 * 110.39634 * 82.51648 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7199 -0.0005 10 8 0.4509 -2.7949 -1.2501 11 8 0.4518 -2.7955 1.2494 12 7 2.2482 -3.9355 -0.0005 13 6 3.1058 -4.0965 1.0962 14 6 2.5821 -4.3248 2.3623 15 9 1.2445 -4.3970 2.5377 16 6 3.4317 -4.4839 3.4428 17 6 4.8014 -4.4166 3.2648 18 6 5.3286 -4.1892 2.0072 19 6 4.4850 -4.0284 0.9197 20 8 5.0034 -3.8042 -0.3177 21 6 6.4273 -3.7470 -0.4239 22 6 6.8201 -3.4885 -1.8798 23 1 6.3614 -4.2377 -2.5251 24 6 8.3563 -3.5395 -2.0247 25 6 8.6313 -2.3854 -3.0269 26 6 7.5292 -1.3747 -2.6213 27 8 6.3915 -2.1798 -2.2738 28 1 -0.4850 0.8401 0.0004 29 1 2.3134 -4.5358 -0.7596 30 1 3.0243 -4.6618 4.4271 31 1 5.4612 -4.5417 4.1107 32 1 6.3989 -4.1377 1.8720 33 1 6.8062 -2.9399 0.2031 34 1 6.8545 -4.6941 -0.0946 35 1 8.8427 -3.3470 -1.0685 36 1 8.6754 -4.4963 -2.4379 37 1 8.4988 -2.7189 -4.0562 38 1 9.6253 -1.9638 -2.8775 39 1 7.2882 -0.7209 -3.4596 40 1 7.8517 -0.7851 -1.7631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192985757.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:10 Heat of formation + Delta-G solvation = -216.452983 kcal Electronic energy + Delta-G solvation = -29241.098190 eV Core-core repulsion = 24868.201489 eV Total energy + Delta-G solvation = -4372.896701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.67673 -41.32739 -40.26672 -38.22816 -37.42582 -36.19536 -35.91316 -35.17545 -33.19199 -31.95529 -30.66088 -29.69846 -28.29579 -26.84498 -23.67588 -23.57257 -22.52614 -21.93108 -21.11178 -19.73147 -19.38778 -18.58446 -18.28262 -18.05228 -17.60301 -17.07638 -17.00909 -16.73955 -16.38051 -16.05136 -16.01161 -15.87271 -15.69440 -15.37107 -14.88159 -14.21291 -14.20640 -14.03715 -13.48125 -13.44430 -13.33437 -13.04805 -12.95330 -12.79584 -12.64416 -12.55163 -12.41663 -12.35634 -12.31822 -12.19574 -12.13220 -11.77401 -11.67199 -11.32546 -11.26886 -10.89250 -10.50534 -9.51377 -9.15128 -8.77252 -7.50788 -0.04022 0.24517 0.44534 1.26732 1.31234 1.43991 2.03125 2.17316 2.53652 2.59808 2.78662 2.93038 3.45912 3.54447 3.60512 3.76530 3.92470 3.95573 4.00164 4.06471 4.15122 4.19957 4.33519 4.38327 4.44175 4.46715 4.59031 4.67657 4.81351 4.90211 4.94498 5.03341 5.04363 5.17237 5.18528 5.26418 5.28799 5.34388 5.76920 5.86595 6.09238 6.17120 6.49194 6.73950 8.18463 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009046 B = 0.005378 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.487856 B = 5205.025565 C = 7047.198043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.988 3.012 4 H -0.254 1.254 5 H -0.256 1.256 6 H -0.248 1.248 7 C -1.029 5.029 8 H 0.108 0.892 9 S 2.706 3.294 10 O -1.042 7.042 11 O -1.014 7.014 12 N -1.056 6.056 13 C 0.050 3.950 14 C 0.095 3.905 15 F -0.129 7.129 16 C -0.185 4.185 17 C -0.039 4.039 18 C -0.205 4.205 19 C 0.142 3.858 20 O -0.320 6.320 21 C 0.038 3.962 22 C 0.069 3.931 23 H 0.081 0.919 24 C -0.134 4.134 25 C -0.146 4.146 26 C 0.031 3.969 27 O -0.410 6.410 28 H 0.300 0.700 29 H 0.419 0.581 30 H 0.162 0.838 31 H 0.189 0.811 32 H 0.177 0.823 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.215 -7.774 2.208 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.805 3.195 4 H -0.178 1.178 5 H -0.179 1.179 6 H -0.172 1.172 7 C -1.163 5.163 8 H 0.126 0.874 9 S 2.809 3.191 10 O -1.032 7.032 11 O -1.003 7.003 12 N -0.807 5.807 13 C -0.047 4.047 14 C 0.072 3.928 15 F -0.108 7.108 16 C -0.205 4.205 17 C -0.057 4.057 18 C -0.224 4.224 19 C 0.093 3.907 20 O -0.233 6.233 21 C -0.037 4.037 22 C 0.012 3.988 23 H 0.099 0.901 24 C -0.171 4.171 25 C -0.183 4.183 26 C -0.045 4.045 27 O -0.330 6.330 28 H 0.110 0.890 29 H 0.255 0.745 30 H 0.179 0.821 31 H 0.206 0.794 32 H 0.194 0.806 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 23.655 -7.649 2.104 24.950 hybrid contribution -0.138 0.778 -0.655 1.026 sum 23.517 -6.871 1.449 24.543 Atomic orbital electron populations 1.69982 1.08623 1.32408 1.41358 1.25999 0.95430 1.05175 0.87468 0.85213 0.78950 0.74591 0.80710 1.17777 1.17930 1.17190 1.30676 1.06480 1.12325 1.66796 0.87368 1.00548 0.72633 0.73920 0.72041 1.93305 1.74538 1.88268 1.47135 1.93392 1.73756 1.87593 1.45594 1.53037 1.53246 1.48459 1.25973 1.17001 0.88586 1.12130 0.87016 1.18302 0.78569 1.01515 0.94398 1.91611 1.30301 1.93056 1.95808 1.21358 0.94328 1.06893 0.97885 1.21325 0.93292 0.93264 0.97795 1.21615 1.01191 1.07982 0.91638 1.19017 0.90431 0.95136 0.86133 1.86199 1.25061 1.85924 1.26092 1.23719 0.77826 1.03600 0.98542 1.23040 0.96807 0.85695 0.93296 0.90097 1.23112 0.90889 1.01385 1.01734 1.23263 0.99913 0.94983 1.00158 1.23670 0.86054 0.94626 1.00197 1.88632 1.32694 1.24377 1.87273 0.88986 0.74523 0.82071 0.79427 0.80609 0.90608 0.87150 0.88152 0.87188 0.90031 0.87200 0.90011 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -56.56 13.19 21.44 0.28 -56.27 16 2 C 0.07 4.33 5.46 84.65 0.46 4.79 16 3 Si 0.99 44.63 29.54 68.60 2.03 46.66 16 4 H -0.25 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 7 C -1.03 -62.99 9.67 67.73 0.66 -62.34 16 8 H 0.11 6.30 7.81 -2.91 -0.02 6.27 16 9 S 2.71 163.67 4.99 -56.49 -0.28 163.39 16 10 O -1.04 -69.02 18.02 -128.00 -2.31 -71.33 16 11 O -1.01 -65.51 14.22 -128.00 -1.82 -67.33 16 12 N -1.06 -50.87 5.40 -50.89 -0.27 -51.14 16 13 C 0.05 2.11 6.06 38.21 0.23 2.34 16 14 C 0.09 3.89 6.93 22.46 0.16 4.05 16 15 F -0.13 -6.36 13.80 44.97 0.62 -5.74 16 16 C -0.19 -5.33 10.02 22.31 0.22 -5.10 16 17 C -0.04 -0.79 10.04 22.28 0.22 -0.56 16 18 C -0.21 -4.66 9.04 22.35 0.20 -4.46 16 19 C 0.14 4.78 6.70 22.58 0.15 4.93 16 20 O -0.32 -10.66 9.87 -91.31 -0.90 -11.56 16 21 C 0.04 0.79 4.27 71.98 0.31 1.10 16 22 C 0.07 1.47 3.81 31.06 0.12 1.59 16 23 H 0.08 1.80 8.14 -2.38 -0.02 1.79 16 24 C -0.13 -1.44 6.54 31.85 0.21 -1.23 16 25 C -0.15 -1.72 7.16 32.05 0.23 -1.49 16 26 C 0.03 0.62 7.78 72.65 0.56 1.19 16 27 O -0.41 -12.37 11.00 -146.53 -1.61 -13.98 16 28 H 0.30 17.00 8.31 -92.71 -0.77 16.23 16 29 H 0.42 17.99 8.96 -96.75 -0.87 17.13 16 30 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 32 H 0.18 2.36 6.30 -2.91 -0.02 2.34 16 33 H 0.08 1.46 7.66 -2.39 -0.02 1.44 16 34 H 0.11 1.41 7.66 -2.39 -0.02 1.39 16 35 H 0.10 0.71 7.85 -2.39 -0.02 0.69 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -94.14 354.35 -0.31 -94.45 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.22 Total: 28.08 kcal Atomic # 6 Polarization: -58.94 SS G_CDS: 3.73 Total: -55.21 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: 0.01 Total: -107.42 kcal Atomic # 8 Polarization: -157.56 SS G_CDS: -6.64 Total: -164.20 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.62 Total: -5.74 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 163.67 SS G_CDS: -0.28 Total: 163.39 kcal Total: -94.14 -0.31 -94.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985757.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.004 kcal (2) G-P(sol) polarization free energy of solvation -94.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds