Wall clock time and date at job start Wed Apr 1 2020 03:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 119.99889 * 2 1 4 4 H 1.48498 * 109.46976 * 270.00026 * 3 2 1 5 5 H 1.48500 * 109.46723 * 30.00068 * 3 2 1 6 6 H 1.48495 * 109.46992 * 149.99867 * 3 2 1 7 7 C 1.37878 * 120.00599 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99904 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00134 * 180.02562 * 7 2 1 10 10 O 1.42102 * 106.40197 * 66.46447 * 9 7 2 11 11 O 1.42096 * 106.40328 * 293.53938 * 9 7 2 12 12 N 1.65609 * 107.21622 * 179.97438 * 9 7 2 13 13 C 1.40147 * 119.99705 * 64.08960 * 12 9 7 14 14 C 1.38908 * 120.09618 * 58.61378 * 13 12 9 15 15 F 1.35106 * 120.02486 * 0.02562 * 14 13 12 16 16 C 1.38375 * 119.94502 * 180.02562 * 14 13 12 17 17 C 1.38275 * 120.13544 * 359.97438 * 16 14 13 18 18 C 1.38259 * 120.19031 * 359.76350 * 17 16 14 19 19 C 1.38580 * 120.04818 * 0.51210 * 18 17 16 20 20 O 1.36011 * 120.06324 * 179.74531 * 19 18 17 21 21 C 1.42907 * 116.99887 * 359.72289 * 20 19 18 22 22 C 1.53010 * 109.46809 * 180.02562 * 21 20 19 23 23 H 1.09000 * 110.67796 * 52.03288 * 22 21 20 24 24 C 1.54995 * 110.61612 * 175.00209 * 22 21 20 25 25 C 1.54810 * 102.09112 * 155.52425 * 24 22 21 26 26 C 1.54101 * 104.18830 * 339.11472 * 25 24 22 27 27 O 1.43749 * 107.29313 * 357.97332 * 26 25 24 28 28 H 0.96997 * 120.00247 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99674 * 244.08632 * 12 9 7 30 30 H 1.07996 * 119.93310 * 180.02562 * 16 14 13 31 31 H 1.07999 * 119.91041 * 179.97438 * 17 16 14 32 32 H 1.07995 * 119.97288 * 180.27640 * 18 17 16 33 33 H 1.08991 * 109.47501 * 60.00474 * 21 20 19 34 34 H 1.09004 * 109.47055 * 299.99630 * 21 20 19 35 35 H 1.08996 * 110.90908 * 37.31780 * 24 22 21 36 36 H 1.09003 * 110.90094 * 273.71784 * 24 22 21 37 37 H 1.09003 * 110.48970 * 97.79557 * 25 24 22 38 38 H 1.08998 * 110.48393 * 220.43760 * 25 24 22 39 39 H 1.09002 * 109.87841 * 117.39761 * 26 25 24 40 40 H 1.08998 * 109.87806 * 238.54862 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 16 3.7666 -1.1938 0.0001 10 8 4.1673 -0.6503 1.2505 11 8 4.1683 -0.6486 -1.2490 12 7 4.2569 -2.7757 0.0000 13 6 3.9582 -3.6017 -1.0921 14 6 4.4003 -3.2616 -2.3642 15 9 5.1200 -2.1335 -2.5506 16 6 4.1031 -4.0792 -3.4403 17 6 3.3672 -5.2346 -3.2519 18 6 2.9289 -5.5813 -1.9873 19 6 3.2172 -4.7652 -0.9050 20 8 2.7818 -5.1033 0.3384 21 6 2.0268 -6.3111 0.4552 22 6 1.6268 -6.5230 1.9168 23 1 1.1410 -5.6326 2.3159 24 6 0.7012 -7.7585 2.0557 25 6 0.9341 -8.1743 3.5286 26 6 2.2884 -7.5350 3.8919 27 8 2.7787 -6.8739 2.7133 28 1 -0.4850 0.8400 -0.0004 29 1 4.7509 -3.1304 0.7557 30 1 4.4474 -3.8148 -4.4292 31 1 3.1370 -5.8699 -4.0944 32 1 2.3582 -6.4868 -1.8434 33 1 2.6325 -7.1522 0.1184 34 1 1.1297 -6.2397 -0.1599 35 1 1.0071 -8.5523 1.3743 36 1 -0.3406 -7.4846 1.8889 37 1 0.1428 -7.7799 4.1661 38 1 0.9892 -9.2595 3.6144 39 1 2.1526 -6.8098 4.6942 40 1 2.9914 -8.3077 4.2031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985758.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:15 Heat of formation + Delta-G solvation = -171.110943 kcal Electronic energy + Delta-G solvation = -29060.496561 eV Core-core repulsion = 24689.566038 eV Total energy + Delta-G solvation = -4370.930523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.18380 -40.20605 -39.33077 -37.08589 -35.56672 -34.48290 -34.36729 -32.97514 -32.38831 -31.14871 -29.49844 -28.45231 -26.34462 -25.96722 -22.65760 -22.38986 -21.61860 -21.17360 -19.15687 -18.34944 -17.63416 -17.29937 -16.83462 -16.69919 -16.41232 -15.89159 -15.63331 -15.45243 -15.22976 -14.83420 -14.60294 -14.48574 -14.07004 -13.81716 -13.71170 -13.28520 -12.89328 -12.80504 -12.33774 -12.24677 -12.02481 -11.86083 -11.73227 -11.56922 -11.51266 -11.29030 -11.13390 -10.89413 -10.80847 -10.77155 -10.53404 -10.35616 -9.90026 -9.79688 -9.74453 -9.16115 -8.92299 -8.20766 -7.84679 -6.75580 -5.27997 1.30858 1.48212 2.10634 3.06592 3.10834 3.22501 3.31413 3.62804 3.77684 3.99908 4.19100 4.27556 4.49172 4.64798 4.65061 4.77720 4.84785 4.91692 5.00786 5.05577 5.10120 5.18550 5.25629 5.28636 5.38733 5.45945 5.50643 5.53906 5.61689 5.71873 5.81388 5.90155 6.16564 6.23472 6.28619 6.46482 6.54977 6.72744 6.98990 7.42578 7.53588 7.76744 8.28560 8.75379 10.36811 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.004502 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.287825 B = 6218.275142 C = 7620.545448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.155 3.845 3 Si 0.801 3.199 4 H -0.245 1.245 5 H -0.255 1.255 6 H -0.221 1.221 7 C -1.007 5.007 8 H 0.122 0.878 9 S 2.662 3.338 10 O -1.002 7.002 11 O -0.990 6.990 12 N -1.054 6.054 13 C 0.096 3.904 14 C 0.137 3.863 15 F -0.098 7.098 16 C -0.186 4.186 17 C -0.060 4.060 18 C -0.219 4.219 19 C 0.154 3.846 20 O -0.291 6.291 21 C 0.065 3.935 22 C 0.076 3.924 23 H 0.088 0.912 24 C -0.146 4.146 25 C -0.155 4.155 26 C 0.044 3.956 27 O -0.366 6.366 28 H 0.280 0.720 29 H 0.416 0.584 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.229 -18.639 -0.139 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.064 4.064 3 Si 0.621 3.379 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.143 1.143 7 C -1.142 5.142 8 H 0.140 0.860 9 S 2.765 3.235 10 O -0.993 6.993 11 O -0.980 6.980 12 N -0.802 5.802 13 C -0.003 4.003 14 C 0.114 3.886 15 F -0.076 7.076 16 C -0.205 4.205 17 C -0.079 4.079 18 C -0.238 4.238 19 C 0.105 3.895 20 O -0.203 6.203 21 C -0.010 4.010 22 C 0.019 3.981 23 H 0.106 0.894 24 C -0.184 4.184 25 C -0.193 4.193 26 C -0.033 4.033 27 O -0.285 6.285 28 H 0.090 0.910 29 H 0.251 0.749 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.856 -17.517 -0.081 17.615 hybrid contribution -0.589 0.235 0.357 0.728 sum 1.267 -17.281 0.276 17.330 Atomic orbital electron populations 1.69983 1.06530 1.28915 1.39888 1.24394 0.94770 0.98672 0.88582 0.87876 0.83575 0.84561 0.81919 1.16858 1.17937 1.14292 1.30351 1.15165 1.02215 1.66448 0.86024 1.01985 0.77686 0.70156 0.73713 1.93482 1.85643 1.75055 1.45093 1.93493 1.84773 1.75168 1.44538 1.53275 1.70695 1.30665 1.25551 1.16500 1.02675 0.93700 0.87376 1.17636 0.93319 0.84946 0.92717 1.91704 1.73763 1.46639 1.95464 1.20934 1.04759 0.96523 0.98306 1.20687 0.95371 0.95468 0.96404 1.21089 1.07980 1.02064 0.92707 1.18797 0.92659 0.93587 0.84484 1.86203 1.67515 1.40966 1.25612 1.22857 0.95951 0.86358 0.95834 1.23194 0.86652 0.97936 0.90363 0.89365 1.23088 1.00659 0.97542 0.97135 1.22929 0.98162 1.01772 0.96390 1.23164 0.94990 0.96250 0.88886 1.88976 1.28998 1.77481 1.33066 0.90990 0.74862 0.84358 0.84863 0.84924 0.91054 0.90152 0.90148 0.89476 0.90372 0.90354 0.92097 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.22 13.96 55.43 0.77 -23.45 16 2 C 0.15 4.58 5.47 -17.82 -0.10 4.48 16 3 Si 0.80 21.21 26.54 -169.99 -4.51 16.70 16 4 H -0.24 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.22 -5.98 5.61 56.52 0.32 -5.67 16 7 C -1.01 -29.35 10.20 30.60 0.31 -29.04 16 8 H 0.12 3.62 8.06 -52.49 -0.42 3.20 16 9 S 2.66 70.91 4.21 -107.50 -0.45 70.45 16 10 O -1.00 -28.35 16.02 -57.17 -0.92 -29.27 16 11 O -0.99 -27.49 13.00 -57.17 -0.74 -28.23 16 12 N -1.05 -22.98 5.41 32.56 0.18 -22.80 16 13 C 0.10 1.92 6.05 -83.45 -0.51 1.42 16 14 C 0.14 2.66 6.95 -39.28 -0.27 2.39 16 15 F -0.10 -2.15 13.74 2.25 0.03 -2.12 16 16 C -0.19 -2.80 10.02 -39.52 -0.40 -3.19 16 17 C -0.06 -0.76 10.04 -39.56 -0.40 -1.16 16 18 C -0.22 -2.96 9.04 -39.45 -0.36 -3.32 16 19 C 0.15 2.67 6.70 -39.10 -0.26 2.41 16 20 O -0.29 -4.97 9.88 -19.77 -0.20 -5.17 16 21 C 0.07 0.81 4.48 37.16 0.17 0.97 16 22 C 0.08 0.91 3.63 -25.67 -0.09 0.82 16 23 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 24 C -0.15 -1.19 6.59 -24.72 -0.16 -1.36 16 25 C -0.15 -1.15 7.01 -25.20 -0.18 -1.33 16 26 C 0.04 0.42 7.70 37.73 0.29 0.72 16 27 O -0.37 -4.93 11.22 -35.23 -0.40 -5.32 16 28 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.42 7.97 8.96 -34.48 -0.31 7.66 16 30 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.34 6.30 -52.49 -0.33 1.01 16 33 H 0.07 0.75 7.65 -51.93 -0.40 0.35 16 34 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 35 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -36.27 347.65 -7.82 -44.09 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.88 Total: 6.06 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -1.95 Total: -26.18 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.95 Total: -46.25 kcal Atomic # 8 Polarization: -65.74 SS G_CDS: -2.25 Total: -67.99 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.03 Total: -2.12 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.51 Total: 16.70 kcal Atomic # 16 Polarization: 70.91 SS G_CDS: -0.45 Total: 70.45 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -36.27 -7.82 -44.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985758.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.021 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds