Wall clock time and date at job start Wed Apr 1 2020 04:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47035 * 239.99961 * 2 1 3 5 5 O 1.45206 * 109.46889 * 119.99962 * 2 1 3 6 6 C 1.34733 * 116.99887 * 60.00503 * 5 2 1 7 7 O 1.21494 * 120.00018 * 359.97438 * 6 5 2 8 8 C 1.47569 * 120.00007 * 180.02562 * 6 5 2 9 9 C 1.39671 * 120.13541 * 0.26563 * 8 6 5 10 10 C 1.38504 * 119.79165 * 180.27954 * 9 8 6 11 11 N 1.39854 * 119.96100 * 179.74931 * 10 9 8 12 12 S 1.65600 * 119.99922 * 224.71973 * 11 10 9 13 13 O 1.42103 * 106.39991 * 311.46464 * 12 11 10 14 14 O 1.42095 * 106.40377 * 178.54248 * 12 11 10 15 15 C 1.76199 * 107.21522 * 65.00069 * 12 11 10 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 12 11 17 17 C 1.37884 * 119.99836 * 179.72073 * 15 12 11 18 18 N 1.31514 * 119.99698 * 0.28505 * 17 15 12 19 19 Si 1.86794 * 119.99837 * 180.27572 * 17 15 12 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.39069 * 120.07058 * 359.46806 * 10 9 8 24 24 C 1.38121 * 120.27941 * 0.23964 * 23 10 9 25 25 C 1.38312 * 120.20751 * 0.03755 * 24 23 10 26 26 F 1.35102 * 120.04278 * 179.97438 * 25 24 23 27 27 H 1.09000 * 109.47430 * 300.00035 * 1 2 3 28 28 H 1.09001 * 109.47003 * 59.99897 * 1 2 3 29 29 H 1.09001 * 109.47606 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47050 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47142 * 300.00017 * 3 2 1 32 32 H 1.09005 * 109.46645 * 60.00045 * 3 2 1 33 33 H 1.09004 * 109.47259 * 299.99800 * 4 2 1 34 34 H 1.09001 * 109.47110 * 60.00207 * 4 2 1 35 35 H 1.08998 * 109.47202 * 180.02562 * 4 2 1 36 36 H 1.07998 * 120.10865 * 0.02562 * 9 8 6 37 37 H 0.96998 * 120.00277 * 44.72443 * 11 10 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 39 39 H 1.07998 * 119.86001 * 180.25560 * 23 10 9 40 40 H 1.08001 * 119.89799 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6520 -1.9733 1.3384 7 8 0.9508 -2.5103 0.5042 8 6 2.1062 -2.7322 2.5197 9 6 2.9069 -2.1157 3.4838 10 6 3.3341 -2.8363 4.5868 11 7 4.1403 -2.2241 5.5517 12 16 5.4660 -3.0176 6.1477 13 8 5.0276 -4.3227 6.4998 14 8 6.0840 -2.1302 7.0695 15 6 6.5986 -3.2165 4.8127 16 1 6.3483 -2.8406 3.8316 17 6 7.8071 -3.8465 5.0220 18 7 8.1119 -4.3039 6.2167 19 14 9.0110 -4.0505 3.6084 20 1 8.4345 -3.4536 2.3770 21 1 10.2854 -3.3642 3.9407 22 1 9.2708 -5.4953 3.3839 23 6 2.9573 -4.1664 4.7387 24 6 2.1606 -4.7772 3.7901 25 6 1.7322 -4.0701 2.6813 26 9 0.9534 -4.6710 1.7553 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7490 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 3.1955 -1.0815 3.3677 37 1 3.9230 -1.3346 5.8719 38 1 8.9620 -4.7474 6.3638 39 1 3.2890 -4.7239 5.6021 40 1 1.8713 -5.8103 3.9145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192986295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:28 Heat of formation + Delta-G solvation = -219.412493 kcal Electronic energy + Delta-G solvation = -28578.000392 eV Core-core repulsion = 24204.975357 eV Total energy + Delta-G solvation = -4373.025035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.00321 -41.91996 -40.34503 -38.04380 -37.49771 -36.26353 -35.83158 -35.17412 -35.07554 -32.57030 -29.76482 -28.37168 -28.28490 -28.27763 -25.99337 -24.03168 -22.75720 -21.22102 -20.78185 -19.66920 -19.09459 -18.58853 -18.49877 -17.86841 -17.34281 -17.25743 -17.05942 -16.84883 -16.48241 -15.96153 -15.73846 -15.48608 -15.29303 -14.90332 -14.66183 -14.47742 -14.37860 -14.00930 -13.68127 -13.37265 -13.36049 -13.12774 -13.04304 -12.96235 -12.86800 -12.76742 -12.69508 -12.59165 -12.49357 -12.31233 -12.29427 -12.08686 -11.61183 -11.41757 -11.27302 -11.05867 -10.93392 -10.35171 -9.38417 -8.77740 -7.50914 -0.60205 -0.11032 0.25949 1.32520 1.34988 1.36152 1.49311 1.51507 2.18443 2.42698 2.56042 2.70237 3.01134 3.34994 3.58044 3.66312 3.74117 3.79613 3.91817 3.95496 3.99534 4.14683 4.43758 4.53727 4.61410 4.64715 4.76937 4.77176 4.83331 4.88786 4.91124 4.93606 5.04732 5.13123 5.22535 5.26847 5.28213 5.28886 5.44494 5.60716 5.87643 6.19645 6.66515 6.77176 8.18063 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012500 B = 0.003577 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.390201 B = 7826.461615 C = 8413.967621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.137 4.137 4 C -0.183 4.183 5 O -0.346 6.346 6 C 0.517 3.483 7 O -0.508 6.508 8 C -0.159 4.159 9 C -0.047 4.047 10 C 0.139 3.861 11 N -1.057 6.057 12 S 2.715 3.285 13 O -1.018 7.018 14 O -1.029 7.029 15 C -1.036 5.036 16 H 0.118 0.882 17 C 0.078 3.922 18 N -0.887 5.887 19 Si 0.983 3.017 20 H -0.251 1.251 21 H -0.258 1.258 22 H -0.259 1.259 23 C -0.096 4.096 24 C -0.130 4.130 25 C 0.135 3.865 26 F -0.124 7.124 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.171 0.829 37 H 0.431 0.569 38 H 0.300 0.700 39 H 0.162 0.838 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.537 8.184 -12.464 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.070 3.930 3 C -0.194 4.194 4 C -0.240 4.240 5 O -0.264 6.264 6 C 0.363 3.637 7 O -0.399 6.399 8 C -0.162 4.162 9 C -0.069 4.069 10 C 0.042 3.958 11 N -0.806 5.806 12 S 2.817 3.183 13 O -1.008 7.008 14 O -1.020 7.020 15 C -1.170 5.170 16 H 0.136 0.864 17 C -0.136 4.136 18 N -0.519 5.519 19 Si 0.801 3.199 20 H -0.174 1.174 21 H -0.182 1.182 22 H -0.183 1.183 23 C -0.117 4.117 24 C -0.149 4.149 25 C 0.115 3.885 26 F -0.102 7.102 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.188 0.812 37 H 0.268 0.732 38 H 0.110 0.890 39 H 0.180 0.820 40 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -12.503 7.562 -11.707 18.723 hybrid contribution 0.617 0.010 -0.848 1.049 sum -11.886 7.572 -12.555 18.874 Atomic orbital electron populations 1.22465 0.93511 1.03616 1.04080 1.22600 0.95014 0.93375 0.82016 1.21891 1.02399 0.90600 1.04472 1.22488 1.01775 1.02079 0.97627 1.86598 1.69715 1.23641 1.46419 1.20689 0.77149 0.81084 0.84801 1.90787 1.35696 1.70401 1.42989 1.19082 1.06873 0.93192 0.97004 1.21415 0.94321 1.01927 0.89221 1.17449 0.95180 0.93006 0.90157 1.53371 1.42567 1.31499 1.53192 1.00318 0.71648 0.71767 0.74548 1.93273 1.82075 1.40814 1.84620 1.93350 1.75809 1.67544 1.65256 1.30813 1.18013 1.51876 1.16263 0.86413 1.25847 0.99117 0.89093 0.99508 1.69958 1.25798 1.32345 1.23753 0.85198 0.77334 0.79537 0.77804 1.17450 1.18248 1.18323 1.22218 0.94128 0.94546 1.00849 1.21167 0.99346 1.02317 0.92079 1.17746 0.92746 0.89771 0.88262 1.91554 1.71590 1.82992 1.64080 0.91517 0.88720 0.92157 0.91423 0.87901 0.90951 0.92174 0.88620 0.92014 0.81175 0.73151 0.88950 0.82040 0.80670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.37 71.98 0.60 -2.63 16 2 C 0.11 2.04 1.13 -10.80 -0.01 2.03 16 3 C -0.14 -1.83 8.85 71.98 0.64 -1.19 16 4 C -0.18 -3.55 8.37 71.98 0.60 -2.94 16 5 O -0.35 -8.63 9.14 -56.43 -0.52 -9.15 16 6 C 0.52 14.95 7.20 70.28 0.51 15.46 16 7 O -0.51 -16.13 10.87 19.86 0.22 -15.91 16 8 C -0.16 -4.66 5.88 -20.08 -0.12 -4.78 16 9 C -0.05 -1.33 9.53 22.68 0.22 -1.12 16 10 C 0.14 4.59 6.21 38.12 0.24 4.83 16 11 N -1.06 -37.73 5.77 -51.41 -0.30 -38.03 16 12 S 2.72 133.69 4.95 -56.49 -0.28 133.41 16 13 O -1.02 -53.83 14.93 -128.00 -1.91 -55.74 16 14 O -1.03 -57.09 18.02 -128.00 -2.31 -59.39 16 15 C -1.04 -53.71 9.68 67.74 0.66 -53.05 16 16 H 0.12 5.60 7.81 -2.91 -0.02 5.57 16 17 C 0.08 4.14 5.46 84.66 0.46 4.61 16 18 N -0.89 -50.12 13.19 21.45 0.28 -49.84 16 19 Si 0.98 39.80 29.54 68.60 2.03 41.82 16 20 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 21 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 C -0.10 -3.20 9.17 22.44 0.21 -3.00 16 24 C -0.13 -3.66 10.00 22.26 0.22 -3.44 16 25 C 0.14 4.02 7.28 22.68 0.17 4.18 16 26 F -0.12 -3.83 15.54 44.97 0.70 -3.13 16 27 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 1.49 5.88 -2.38 -0.01 1.47 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.17 4.03 7.61 -2.91 -0.02 4.01 16 37 H 0.43 12.36 8.95 -96.75 -0.87 11.50 16 38 H 0.30 15.21 8.31 -92.70 -0.77 14.44 16 39 H 0.16 5.99 5.56 -2.91 -0.02 5.98 16 40 H 0.18 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -71.21 355.48 2.53 -68.68 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.24 Total: 28.31 kcal Atomic # 6 Polarization: -45.42 SS G_CDS: 4.38 Total: -41.04 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -0.01 Total: -87.86 kcal Atomic # 8 Polarization: -135.67 SS G_CDS: -4.52 Total: -140.19 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.70 Total: -3.13 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.82 kcal Atomic # 16 Polarization: 133.69 SS G_CDS: -0.28 Total: 133.41 kcal Total: -71.21 2.53 -68.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.731 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds