Wall clock time and date at job start Wed Apr 1 2020 03:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00285 * 2 1 4 4 H 1.48498 * 109.46762 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47071 * 119.99911 * 3 2 1 6 6 H 1.48493 * 109.47424 * 240.00004 * 3 2 1 7 7 C 1.37876 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99847 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99969 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40430 * 293.53905 * 9 7 2 11 11 O 1.42097 * 106.40421 * 66.46107 * 9 7 2 12 12 N 1.65600 * 107.22087 * 179.97438 * 9 7 2 13 13 C 1.39976 * 120.00095 * 67.61511 * 12 9 7 14 14 C 1.38790 * 120.07515 * 327.63161 * 13 12 9 15 15 C 1.38192 * 120.01523 * 179.97438 * 14 13 12 16 16 C 1.38267 * 120.17825 * 359.97438 * 15 14 13 17 17 C 1.38453 * 120.15141 * 359.97438 * 16 15 14 18 18 F 1.35094 * 120.01239 * 179.97438 * 17 16 15 19 19 C 1.38697 * 119.97774 * 359.76395 * 17 16 15 20 20 O 1.36070 * 120.08591 * 180.25929 * 19 17 16 21 21 C 1.42902 * 117.00406 * 270.23179 * 20 19 17 22 22 C 1.52990 * 109.47512 * 179.97438 * 21 20 19 23 23 H 1.09007 * 110.27568 * 55.63752 * 22 21 20 24 24 C 1.54945 * 110.31031 * 177.83161 * 22 21 20 25 25 C 1.55305 * 100.94580 * 155.35962 * 24 22 21 26 26 C 1.54381 * 102.24971 * 325.86836 * 25 24 22 27 27 O 1.43237 * 107.59122 * 21.35560 * 26 25 24 28 28 H 0.97002 * 119.99636 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00195 * 247.62619 * 12 9 7 30 30 H 1.08004 * 119.99076 * 359.97438 * 14 13 12 31 31 H 1.08005 * 119.91144 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.92513 * 179.97438 * 16 15 14 33 33 H 1.09005 * 109.46510 * 300.00017 * 21 20 19 34 34 H 1.09000 * 109.47222 * 59.99237 * 21 20 19 35 35 H 1.09001 * 111.12486 * 273.27936 * 24 22 21 36 36 H 1.09000 * 111.12645 * 37.44129 * 24 22 21 37 37 H 1.08994 * 110.85067 * 207.68031 * 25 24 22 38 38 H 1.08999 * 110.84311 * 84.05397 * 25 24 22 39 39 H 1.08996 * 109.83424 * 261.84177 * 26 25 24 40 40 H 1.09003 * 109.90441 * 140.90943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7199 -0.0005 10 8 0.4518 -2.7955 1.2494 11 8 0.4508 -2.7950 -1.2500 12 7 2.2481 -3.9355 -0.0019 13 6 3.0632 -4.1362 1.1182 14 6 3.4499 -3.0562 1.8995 15 6 4.2541 -3.2558 3.0054 16 6 4.6754 -4.5302 3.3375 17 6 4.2931 -5.6128 2.5637 18 9 4.7068 -6.8566 2.8905 19 6 3.4815 -5.4204 1.4555 20 8 3.1001 -6.4834 0.6966 21 6 3.9532 -6.8428 -0.3920 22 6 3.3654 -8.0514 -1.1232 23 1 2.3453 -7.8396 -1.4436 24 6 4.2475 -8.4243 -2.3413 25 6 3.8985 -9.9284 -2.5086 26 6 3.6807 -10.3785 -1.0480 27 8 3.3908 -9.2092 -0.2733 28 1 -0.4850 0.8401 0.0004 29 1 2.3422 -4.5083 -0.7790 30 1 3.1221 -2.0595 1.6430 31 1 4.5537 -2.4142 3.6124 32 1 5.3042 -4.6814 4.2024 33 1 4.0337 -6.0035 -1.0829 34 1 4.9425 -7.0953 -0.0104 35 1 3.9595 -7.8536 -3.2242 36 1 5.3054 -8.2892 -2.1163 37 1 4.7280 -10.4709 -2.9621 38 1 2.9867 -10.0523 -3.0928 39 1 4.5837 -10.8579 -0.6702 40 1 2.8431 -11.0741 -0.9951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192986372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:26 Heat of formation + Delta-G solvation = -192.141729 kcal Electronic energy + Delta-G solvation = -28724.039609 eV Core-core repulsion = 24352.197123 eV Total energy + Delta-G solvation = -4371.842486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.64730 -40.00520 -39.33308 -37.13704 -35.42665 -34.40213 -34.16605 -33.25810 -32.42449 -31.26410 -29.41536 -28.47670 -26.38553 -25.67365 -22.56417 -22.37840 -21.81283 -21.43704 -19.15642 -18.32000 -17.82981 -17.33894 -17.12307 -16.75662 -16.32298 -15.86405 -15.59441 -15.28840 -15.09221 -14.94844 -14.77574 -14.34488 -14.17039 -13.93730 -13.61628 -13.42466 -13.02627 -12.77653 -12.24543 -12.10987 -12.05842 -12.01045 -11.73488 -11.54869 -11.31885 -11.27736 -11.13560 -11.01691 -10.86885 -10.72001 -10.53502 -10.41563 -10.38384 -9.76358 -9.63506 -9.36402 -8.98707 -8.40158 -7.88020 -6.85540 -5.51322 1.24987 1.43718 2.00347 3.00017 3.05673 3.09907 3.36869 3.62388 3.85110 3.92364 4.19752 4.25566 4.48520 4.51552 4.59417 4.67832 4.92205 4.96905 5.05022 5.09532 5.23657 5.30292 5.33626 5.40691 5.44442 5.50420 5.57983 5.59947 5.63492 5.71393 5.87847 5.95248 6.17363 6.25363 6.38339 6.61782 6.70071 6.86771 6.94499 7.15628 7.45015 7.72662 7.75314 8.70614 10.08742 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003659 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.094785 B = 7649.980679 C = 8877.887212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.135 3.865 3 Si 0.923 3.077 4 H -0.275 1.275 5 H -0.261 1.261 6 H -0.263 1.263 7 C -1.024 5.024 8 H 0.111 0.889 9 S 2.700 3.300 10 O -0.985 6.985 11 O -0.994 6.994 12 N -1.061 6.061 13 C 0.210 3.790 14 C -0.171 4.171 15 C -0.059 4.059 16 C -0.180 4.180 17 C 0.104 3.896 18 F -0.134 7.134 19 C 0.016 3.984 20 O -0.308 6.308 21 C 0.059 3.941 22 C 0.083 3.917 23 H 0.085 0.915 24 C -0.150 4.150 25 C -0.154 4.154 26 C 0.047 3.953 27 O -0.367 6.367 28 H 0.295 0.705 29 H 0.412 0.588 30 H 0.172 0.828 31 H 0.140 0.860 32 H 0.136 0.864 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.284 -12.067 -1.654 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.085 4.085 3 Si 0.747 3.253 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.187 1.187 7 C -1.158 5.158 8 H 0.129 0.871 9 S 2.800 3.200 10 O -0.975 6.975 11 O -0.984 6.984 12 N -0.801 5.801 13 C 0.110 3.890 14 C -0.192 4.192 15 C -0.078 4.078 16 C -0.200 4.200 17 C 0.084 3.916 18 F -0.112 7.112 19 C -0.033 4.033 20 O -0.224 6.224 21 C -0.016 4.016 22 C 0.025 3.975 23 H 0.102 0.898 24 C -0.188 4.188 25 C -0.192 4.192 26 C -0.029 4.029 27 O -0.287 6.287 28 H 0.105 0.895 29 H 0.245 0.755 30 H 0.189 0.811 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.866 -12.185 -1.343 16.381 hybrid contribution 1.229 0.662 -0.649 1.539 sum 12.095 -11.523 -1.991 16.823 Atomic orbital electron populations 1.69878 1.06875 1.31257 1.38691 1.24757 0.94505 1.00872 0.88359 0.86146 0.79875 0.79336 0.79993 1.20010 1.18518 1.18740 1.30505 1.06154 1.11205 1.67895 0.87115 1.01192 0.72143 0.73378 0.73275 1.93420 1.71858 1.86954 1.45218 1.93398 1.72253 1.87263 1.45515 1.54357 1.52888 1.51775 1.21045 1.17563 0.91552 0.91560 0.88363 1.21986 0.99848 1.00480 0.96848 1.20846 0.95291 0.96272 0.95410 1.20972 1.05355 0.91727 1.01947 1.17803 0.97327 0.80139 0.96344 1.91478 1.88438 1.39267 1.92036 1.18422 1.03952 0.86387 0.94500 1.86237 1.47671 1.45807 1.42708 1.22997 0.94086 0.95801 0.88735 1.23015 0.99755 0.85644 0.89041 0.89765 1.23257 1.00854 0.96346 0.98294 1.23112 1.02838 0.95781 0.97460 1.23139 1.00670 0.88913 0.90214 1.88565 1.92330 1.14799 1.32974 0.89485 0.75512 0.81076 0.84236 0.84605 0.91427 0.92069 0.89157 0.89973 0.89863 0.90242 0.91423 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.42 13.19 55.43 0.73 -22.68 16 2 C 0.13 3.51 5.46 -17.82 -0.10 3.41 16 3 Si 0.92 19.11 29.54 -169.99 -5.02 14.09 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -1.02 -26.05 7.57 30.60 0.23 -25.82 16 8 H 0.11 2.49 6.91 -52.49 -0.36 2.13 16 9 S 2.70 69.70 4.62 -107.50 -0.50 69.21 16 10 O -0.98 -28.27 17.43 -57.18 -1.00 -29.26 16 11 O -0.99 -28.21 18.02 -57.18 -1.03 -29.24 16 12 N -1.06 -21.71 5.67 32.51 0.18 -21.52 16 13 C 0.21 4.06 6.22 -83.57 -0.52 3.54 16 14 C -0.17 -3.14 8.91 -39.39 -0.35 -3.49 16 15 C -0.06 -0.88 10.04 -39.59 -0.40 -1.27 16 16 C -0.18 -2.55 10.02 -39.49 -0.40 -2.94 16 17 C 0.10 1.72 7.30 -39.33 -0.29 1.44 16 18 F -0.13 -2.22 17.11 2.25 0.04 -2.18 16 19 C 0.02 0.30 5.75 -39.05 -0.22 0.07 16 20 O -0.31 -5.46 9.44 -21.58 -0.20 -5.67 16 21 C 0.06 0.81 5.65 37.15 0.21 1.02 16 22 C 0.08 1.01 3.73 -25.71 -0.10 0.92 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 24 C -0.15 -1.27 6.57 -24.48 -0.16 -1.43 16 25 C -0.15 -1.15 7.02 -24.79 -0.17 -1.33 16 26 C 0.05 0.46 7.79 37.88 0.30 0.75 16 27 O -0.37 -5.13 11.03 -36.85 -0.41 -5.53 16 28 H 0.29 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.41 7.27 8.08 -34.47 -0.28 6.99 16 30 H 0.17 3.39 4.49 -52.48 -0.24 3.15 16 31 H 0.14 1.60 8.06 -52.48 -0.42 1.17 16 32 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.07 0.81 7.70 -51.93 -0.40 0.41 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -34.91 356.06 -8.44 -43.35 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.63 Total: 9.22 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -1.97 Total: -25.14 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.92 Total: -44.21 kcal Atomic # 8 Polarization: -67.07 SS G_CDS: -2.64 Total: -69.71 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 69.70 SS G_CDS: -0.50 Total: 69.21 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.91 -8.44 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.791 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds