Wall clock time and date at job start Wed Apr 1 2020 03:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00285 * 2 1 4 4 H 1.48498 * 109.46762 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47071 * 119.99911 * 3 2 1 6 6 H 1.48493 * 109.47424 * 240.00004 * 3 2 1 7 7 C 1.37876 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99847 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99969 * 359.97438 * 7 2 1 10 10 O 1.42094 * 106.40430 * 293.53905 * 9 7 2 11 11 O 1.42097 * 106.40421 * 66.46107 * 9 7 2 12 12 N 1.65600 * 107.22087 * 179.97438 * 9 7 2 13 13 C 1.39976 * 120.00095 * 67.61511 * 12 9 7 14 14 C 1.38790 * 120.07515 * 327.63161 * 13 12 9 15 15 C 1.38192 * 120.01523 * 179.97438 * 14 13 12 16 16 C 1.38267 * 120.17825 * 359.97438 * 15 14 13 17 17 C 1.38453 * 120.15141 * 359.97438 * 16 15 14 18 18 F 1.35094 * 120.01239 * 179.97438 * 17 16 15 19 19 C 1.38697 * 119.97774 * 359.76395 * 17 16 15 20 20 O 1.36070 * 120.08591 * 180.25929 * 19 17 16 21 21 C 1.42902 * 117.00406 * 270.23179 * 20 19 17 22 22 C 1.52990 * 109.47512 * 179.97438 * 21 20 19 23 23 H 1.09007 * 110.27568 * 55.63752 * 22 21 20 24 24 C 1.54945 * 110.31031 * 177.83161 * 22 21 20 25 25 C 1.55305 * 100.94580 * 155.35962 * 24 22 21 26 26 C 1.54381 * 102.24971 * 325.86836 * 25 24 22 27 27 O 1.43237 * 107.59122 * 21.35560 * 26 25 24 28 28 H 0.97002 * 119.99636 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00195 * 247.62619 * 12 9 7 30 30 H 1.08004 * 119.99076 * 359.97438 * 14 13 12 31 31 H 1.08005 * 119.91144 * 180.02562 * 15 14 13 32 32 H 1.07993 * 119.92513 * 179.97438 * 16 15 14 33 33 H 1.09005 * 109.46510 * 300.00017 * 21 20 19 34 34 H 1.09000 * 109.47222 * 59.99237 * 21 20 19 35 35 H 1.09001 * 111.12486 * 273.27936 * 24 22 21 36 36 H 1.09000 * 111.12645 * 37.44129 * 24 22 21 37 37 H 1.08994 * 110.85067 * 207.68031 * 25 24 22 38 38 H 1.08999 * 110.84311 * 84.05397 * 25 24 22 39 39 H 1.08996 * 109.83424 * 261.84177 * 26 25 24 40 40 H 1.09003 * 109.90441 * 140.90943 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7199 -0.0005 10 8 0.4518 -2.7955 1.2494 11 8 0.4508 -2.7950 -1.2500 12 7 2.2481 -3.9355 -0.0019 13 6 3.0632 -4.1362 1.1182 14 6 3.4499 -3.0562 1.8995 15 6 4.2541 -3.2558 3.0054 16 6 4.6754 -4.5302 3.3375 17 6 4.2931 -5.6128 2.5637 18 9 4.7068 -6.8566 2.8905 19 6 3.4815 -5.4204 1.4555 20 8 3.1001 -6.4834 0.6966 21 6 3.9532 -6.8428 -0.3920 22 6 3.3654 -8.0514 -1.1232 23 1 2.3453 -7.8396 -1.4436 24 6 4.2475 -8.4243 -2.3413 25 6 3.8985 -9.9284 -2.5086 26 6 3.6807 -10.3785 -1.0480 27 8 3.3908 -9.2092 -0.2733 28 1 -0.4850 0.8401 0.0004 29 1 2.3422 -4.5083 -0.7790 30 1 3.1221 -2.0595 1.6430 31 1 4.5537 -2.4142 3.6124 32 1 5.3042 -4.6814 4.2024 33 1 4.0337 -6.0035 -1.0829 34 1 4.9425 -7.0953 -0.0104 35 1 3.9595 -7.8536 -3.2242 36 1 5.3054 -8.2892 -2.1163 37 1 4.7280 -10.4709 -2.9621 38 1 2.9867 -10.0523 -3.0928 39 1 4.5837 -10.8579 -0.6702 40 1 2.8431 -11.0741 -0.9951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192986372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:25 Heat of formation + Delta-G solvation = -218.868870 kcal Electronic energy + Delta-G solvation = -28725.198584 eV Core-core repulsion = 24352.197123 eV Total energy + Delta-G solvation = -4373.001462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.94065 -41.20796 -40.33788 -38.40746 -37.53598 -36.31823 -35.90697 -35.21387 -33.25396 -32.21956 -30.67747 -29.81143 -28.36690 -26.61350 -23.94010 -23.63890 -22.57407 -22.35786 -21.02716 -19.90176 -19.39533 -18.65492 -18.59217 -18.02958 -17.53124 -17.28444 -16.83667 -16.73014 -16.64404 -16.14936 -16.01536 -15.91659 -15.61222 -15.38954 -14.97608 -14.38125 -14.22158 -14.01795 -13.83788 -13.62091 -13.40294 -13.04687 -12.92716 -12.78907 -12.69362 -12.65149 -12.62517 -12.55389 -12.30481 -12.24843 -12.21166 -11.90898 -11.74589 -11.22241 -11.05567 -10.93747 -10.54461 -9.69627 -9.30232 -8.78185 -7.54413 -0.07353 0.01032 0.22526 1.39440 1.41141 1.54915 2.17288 2.23390 2.55121 2.58466 2.62510 2.77679 3.19559 3.48567 3.56245 3.74573 3.88251 3.90689 3.93529 3.99937 4.08445 4.13484 4.28194 4.29671 4.36544 4.39081 4.48086 4.64736 4.78747 4.84729 4.91405 4.97212 4.99945 5.05215 5.16254 5.19789 5.26021 5.37143 5.67924 5.83770 5.96658 6.04285 6.39983 6.72500 8.18455 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.003659 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.094785 B = 7649.980679 C = 8877.887212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.239 1.239 6 H -0.251 1.251 7 C -1.029 5.029 8 H 0.136 0.864 9 S 2.703 3.297 10 O -1.025 7.025 11 O -1.033 7.033 12 N -1.053 6.053 13 C 0.177 3.823 14 C -0.190 4.190 15 C -0.049 4.049 16 C -0.155 4.155 17 C 0.092 3.908 18 F -0.135 7.135 19 C 0.010 3.990 20 O -0.333 6.333 21 C 0.054 3.946 22 C 0.075 3.925 23 H 0.072 0.928 24 C -0.143 4.143 25 C -0.146 4.146 26 C 0.036 3.964 27 O -0.403 6.403 28 H 0.301 0.699 29 H 0.421 0.579 30 H 0.156 0.844 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.424 -11.603 -1.185 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.811 3.189 4 H -0.193 1.193 5 H -0.162 1.162 6 H -0.175 1.175 7 C -1.163 5.163 8 H 0.154 0.846 9 S 2.806 3.194 10 O -1.015 7.015 11 O -1.023 7.023 12 N -0.797 5.797 13 C 0.078 3.922 14 C -0.211 4.211 15 C -0.067 4.067 16 C -0.175 4.175 17 C 0.071 3.929 18 F -0.114 7.114 19 C -0.039 4.039 20 O -0.250 6.250 21 C -0.020 4.020 22 C 0.018 3.982 23 H 0.090 0.910 24 C -0.180 4.180 25 C -0.183 4.183 26 C -0.040 4.040 27 O -0.324 6.324 28 H 0.112 0.888 29 H 0.256 0.744 30 H 0.173 0.827 31 H 0.198 0.802 32 H 0.195 0.805 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.010 -11.772 -0.876 18.320 hybrid contribution 0.302 0.360 -0.730 0.868 sum 14.312 -11.413 -1.605 18.376 Atomic orbital electron populations 1.69989 1.09017 1.32761 1.40381 1.26053 0.95306 1.05339 0.87257 0.85102 0.78703 0.73854 0.81231 1.19319 1.16221 1.17460 1.30727 1.07395 1.10720 1.67476 0.84588 1.00706 0.72571 0.74247 0.71877 1.93354 1.73791 1.87795 1.46563 1.93334 1.74157 1.88104 1.46734 1.53613 1.52729 1.51057 1.22303 1.17781 0.92981 0.92669 0.88737 1.22066 1.01207 0.99440 0.98416 1.21270 0.93455 0.97886 0.94114 1.21411 1.03834 0.90407 1.01835 1.18022 0.97638 0.80820 0.96385 1.91474 1.88413 1.39549 1.91959 1.18566 1.04080 0.85998 0.95225 1.86185 1.49287 1.45697 1.43868 1.23251 0.93864 0.96933 0.87999 1.23135 1.00002 0.84925 0.90130 0.91002 1.23277 1.00590 0.97206 0.96930 1.23119 1.04114 0.95013 0.96066 1.23380 1.01328 0.87792 0.91461 1.88518 1.92603 1.16302 1.34950 0.88843 0.74398 0.82708 0.80241 0.80487 0.90153 0.91624 0.87640 0.89010 0.87410 0.89658 0.90410 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.92 13.19 21.45 0.28 -50.64 16 2 C 0.07 3.88 5.46 84.65 0.46 4.34 16 3 Si 0.99 37.92 29.54 68.60 2.03 39.95 16 4 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.24 -8.24 7.11 99.48 0.71 -7.53 16 6 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 7 C -1.03 -52.67 7.57 67.73 0.51 -52.16 16 8 H 0.14 6.03 6.91 -2.91 -0.02 6.01 16 9 S 2.70 144.84 4.62 -56.49 -0.26 144.58 16 10 O -1.03 -61.47 17.43 -128.00 -2.23 -63.70 16 11 O -1.03 -61.34 18.02 -128.00 -2.31 -63.64 16 12 N -1.05 -44.56 5.67 -51.07 -0.29 -44.85 16 13 C 0.18 6.92 6.22 38.21 0.24 7.15 16 14 C -0.19 -6.84 8.91 22.39 0.20 -6.64 16 15 C -0.05 -1.29 10.04 22.27 0.22 -1.07 16 16 C -0.16 -3.87 10.02 22.33 0.22 -3.64 16 17 C 0.09 2.89 7.30 22.43 0.16 3.06 16 18 F -0.14 -4.31 17.11 44.97 0.77 -3.54 16 19 C 0.01 0.37 5.75 22.61 0.13 0.50 16 20 O -0.33 -12.13 9.44 -92.79 -0.88 -13.00 16 21 C 0.05 1.49 5.65 71.98 0.41 1.89 16 22 C 0.08 1.86 3.73 31.26 0.12 1.98 16 23 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 24 C -0.14 -2.21 6.57 32.05 0.21 -2.00 16 25 C -0.15 -1.90 7.02 31.85 0.22 -1.67 16 26 C 0.04 0.67 7.79 72.45 0.56 1.24 16 27 O -0.40 -11.39 11.03 -147.43 -1.63 -13.02 16 28 H 0.30 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.42 15.59 8.08 -96.75 -0.78 14.81 16 30 H 0.16 6.08 4.49 -2.91 -0.01 6.07 16 31 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.08 1.94 7.70 -2.38 -0.02 1.92 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.25 8.06 -2.39 -0.02 1.23 16 37 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -79.30 356.06 -0.52 -79.82 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.32 Total: 35.09 kcal Atomic # 6 Polarization: -50.71 SS G_CDS: 3.68 Total: -47.04 kcal Atomic # 7 Polarization: -95.48 SS G_CDS: -0.01 Total: -95.49 kcal Atomic # 8 Polarization: -146.33 SS G_CDS: -7.04 Total: -153.37 kcal Atomic # 9 Polarization: -4.31 SS G_CDS: 0.77 Total: -3.54 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 16 Polarization: 144.84 SS G_CDS: -0.26 Total: 144.58 kcal Total: -79.30 -0.52 -79.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192986372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.051 kcal (2) G-P(sol) polarization free energy of solvation -79.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds