Wall clock time and date at job start Wed Apr 1 2020 03:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99884 * 2 1 4 4 H 1.48505 * 109.47417 * 270.00566 * 3 2 1 5 5 H 1.48504 * 109.47252 * 30.00873 * 3 2 1 6 6 H 1.48506 * 109.46738 * 150.00618 * 3 2 1 7 7 C 1.38812 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00319 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99800 * 179.97438 * 7 2 1 10 10 C 1.46502 * 119.99727 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46746 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.49748 * 55.06818 * 11 10 9 13 13 C 1.53048 * 109.51905 * 175.14651 * 11 10 9 14 14 C 1.53045 * 109.53515 * 181.33401 * 13 11 10 15 15 C 1.53194 * 109.31073 * 298.63511 * 14 13 11 16 16 N 1.47211 * 108.85854 * 54.65220 * 15 14 13 17 17 C 1.34774 * 120.81294 * 126.33133 * 16 15 14 18 18 O 1.21720 * 119.99582 * 179.97438 * 17 16 15 19 19 C 1.46539 * 120.00006 * 359.97438 * 17 16 15 20 20 C 1.37965 * 126.21696 * 208.62665 * 19 17 16 21 21 C 1.39796 * 107.12429 * 179.90469 * 20 19 17 22 22 Cl 1.73602 * 126.06392 * 180.11192 * 21 20 19 23 23 C 1.35721 * 107.87569 * 0.36657 * 21 20 19 24 24 Cl 1.73602 * 125.58347 * 179.75723 * 23 21 20 25 25 N 1.35663 * 108.82873 * 359.76992 * 23 21 20 26 26 H 0.97007 * 125.69077 * 179.97438 * 25 23 21 27 27 C 1.46925 * 118.55210 * 306.47786 * 16 15 14 28 28 H 0.96996 * 119.99918 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00447 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47270 * 60.00241 * 10 9 7 31 31 H 1.08996 * 109.47391 * 299.99405 * 10 9 7 32 32 H 1.08997 * 109.45985 * 301.35427 * 13 11 10 33 33 H 1.08995 * 109.45808 * 61.33064 * 13 11 10 34 34 H 1.08999 * 109.49778 * 58.58219 * 14 13 11 35 35 H 1.08992 * 109.49957 * 178.68343 * 14 13 11 36 36 H 1.09004 * 109.58319 * 174.42008 * 15 14 13 37 37 H 1.08998 * 109.58916 * 294.70406 * 15 14 13 38 38 H 1.07998 * 126.43754 * 0.03310 * 20 19 17 39 39 H 1.08996 * 109.58980 * 293.67956 * 27 16 15 40 40 H 1.08997 * 109.58545 * 173.39587 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1912 -0.0024 12 1 5.8671 -1.5460 0.8395 13 6 6.3819 -3.5109 0.1197 14 6 7.8858 -3.2290 0.1519 15 6 8.3017 -2.5478 -1.1557 16 7 7.4678 -1.3512 -1.3551 17 6 8.0305 -0.1455 -1.5698 18 8 7.3267 0.8341 -1.7332 19 6 9.4895 -0.0139 -1.6064 20 6 10.2155 1.1091 -1.2670 21 6 11.5661 0.7957 -1.4458 22 17 12.9085 1.8579 -1.1573 23 6 11.6414 -0.4845 -1.8902 24 17 13.1051 -1.3384 -2.2672 25 7 10.3855 -0.9873 -1.9918 26 1 10.1565 -1.8825 -2.2871 27 6 6.0065 -1.4984 -1.3118 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3622 -0.0014 30 1 3.8485 -3.0427 -0.8908 31 1 3.8492 -3.0422 0.8892 32 1 6.0877 -4.0177 1.0387 33 1 6.1499 -4.1456 -0.7354 34 1 8.1153 -2.5738 0.9923 35 1 8.4296 -4.1671 0.2623 36 1 9.3503 -2.2558 -1.0981 37 1 8.1595 -3.2370 -1.9881 38 1 9.8156 2.0523 -0.9253 39 1 5.6748 -2.1012 -2.1571 40 1 5.5387 -0.5150 -1.3583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266802323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:16 Heat of formation + Delta-G solvation = 3.105809 kcal Electronic energy + Delta-G solvation = -25574.368687 eV Core-core repulsion = 21669.578189 eV Total energy + Delta-G solvation = -3904.790497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.95030 -40.89931 -38.93933 -37.94242 -37.56748 -36.83155 -34.62977 -33.34302 -32.61772 -31.86846 -30.47513 -27.48069 -26.84507 -24.65242 -23.64096 -22.68704 -22.28584 -21.69385 -21.07858 -19.70203 -19.02304 -17.95818 -17.19844 -16.82337 -16.68425 -16.07202 -15.92148 -15.86636 -15.65138 -15.26933 -14.95560 -14.77306 -14.51635 -14.44984 -14.17161 -14.16732 -13.87166 -13.39756 -13.12880 -13.00767 -12.93965 -12.71812 -12.50619 -12.24737 -12.09082 -12.01778 -11.93475 -11.88292 -11.67601 -11.44834 -11.25026 -11.02657 -10.22363 -9.89444 -9.41056 -9.31762 -8.06641 -5.38461 -0.00485 0.26251 0.95617 1.03346 1.34026 1.37689 1.41827 1.59516 1.81267 2.22571 2.43282 3.24066 3.25775 3.50528 3.64479 3.69865 3.82831 3.95727 3.97948 4.07781 4.19751 4.31864 4.41022 4.46197 4.66634 4.72198 4.76450 4.84438 4.94369 5.01476 5.04533 5.15545 5.18175 5.29696 5.32213 5.45724 5.73559 5.78880 6.14287 6.18562 6.83296 7.04726 7.82322 7.98136 9.14943 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.016843 B = 0.002739 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.031594 B =10220.496260 C =11545.371477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.057 4.057 3 Si 0.944 3.056 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.230 4.230 8 H 0.065 0.935 9 N -0.762 5.762 10 C 0.160 3.840 11 C -0.100 4.100 12 H 0.059 0.941 13 C -0.107 4.107 14 C -0.126 4.126 15 C 0.080 3.920 16 N -0.600 5.600 17 C 0.583 3.417 18 O -0.566 6.566 19 C -0.014 4.014 20 C -0.100 4.100 21 C -0.108 4.108 22 Cl -0.025 7.025 23 C 0.105 3.895 24 Cl 0.025 6.975 25 N -0.506 5.506 26 H 0.444 0.556 27 C 0.122 3.878 28 H 0.258 0.742 29 H 0.362 0.638 30 H 0.035 0.965 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.161 0.839 39 H 0.086 0.914 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.693 -8.709 -4.022 35.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.249 4.249 3 Si 0.773 3.227 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.361 4.361 8 H 0.083 0.917 9 N -0.408 5.408 10 C 0.034 3.966 11 C -0.120 4.120 12 H 0.078 0.922 13 C -0.145 4.145 14 C -0.164 4.164 15 C -0.041 4.041 16 N -0.331 5.331 17 C 0.371 3.629 18 O -0.445 6.445 19 C -0.128 4.128 20 C -0.127 4.127 21 C -0.142 4.142 22 Cl 0.004 6.996 23 C -0.040 4.040 24 Cl 0.053 6.947 25 N -0.114 5.114 26 H 0.293 0.707 27 C -0.001 4.001 28 H 0.067 0.933 29 H 0.195 0.805 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.179 0.821 39 H 0.104 0.896 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 33.284 -8.491 -4.182 34.604 hybrid contribution -0.220 1.106 -0.041 1.128 sum 33.065 -7.385 -4.223 34.141 Atomic orbital electron populations 1.69847 1.06779 1.26559 1.59918 1.25356 0.95971 1.00610 1.02967 0.85579 0.78373 0.80817 0.77977 1.20969 1.21727 1.18833 1.19071 0.82671 0.93542 1.40774 0.91743 1.42869 1.02663 1.04338 1.90935 1.20846 0.89547 0.87192 0.99019 1.21623 0.94562 0.98972 0.96794 0.92236 1.21513 0.94415 0.94627 1.03930 1.21884 0.95991 1.02203 0.96286 1.22632 0.94709 0.86152 1.00625 1.48222 1.07567 1.07779 1.69572 1.17242 0.85573 0.83162 0.76899 1.90912 1.62923 1.38792 1.51845 1.19893 0.88658 0.90425 1.13789 1.21235 0.90106 0.98466 1.02854 1.19647 0.90040 0.91478 1.13082 1.98357 1.42647 1.63598 1.95010 1.20681 0.82766 0.92220 1.08336 1.98448 1.27291 1.76193 1.92759 1.42565 1.03083 1.14625 1.51165 0.70723 1.21598 0.78570 1.01470 0.98445 0.93284 0.80540 0.94650 0.94955 0.90436 0.89781 0.92278 0.86763 0.88581 0.87391 0.82100 0.89593 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.02 13.97 21.65 0.30 -63.72 16 2 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 3 Si 0.94 48.70 27.73 68.60 1.90 50.60 16 4 H -0.28 -14.58 7.11 99.48 0.71 -13.87 16 5 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 6 H -0.26 -12.81 6.52 99.48 0.65 -12.16 16 7 C -0.23 -13.31 10.47 84.03 0.88 -12.43 16 8 H 0.06 4.01 8.06 -2.91 -0.02 3.98 16 9 N -0.76 -36.32 5.18 -343.44 -1.78 -38.09 16 10 C 0.16 5.73 5.66 86.38 0.49 6.21 16 11 C -0.10 -2.67 2.38 -10.71 -0.03 -2.70 16 12 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 13 C -0.11 -1.77 5.17 30.63 0.16 -1.61 16 14 C -0.13 -1.41 6.08 30.67 0.19 -1.22 16 15 C 0.08 0.88 5.58 86.31 0.48 1.36 16 16 N -0.60 -13.09 2.98 -823.02 -2.46 -15.55 16 17 C 0.58 15.62 7.63 86.41 0.66 16.28 16 18 O -0.57 -21.11 16.41 -4.41 -0.07 -21.18 16 19 C -0.01 -0.28 6.38 40.31 0.26 -0.02 16 20 C -0.10 -2.08 10.75 22.58 0.24 -1.84 16 21 C -0.11 -1.91 6.66 22.06 0.15 -1.76 16 22 Cl -0.02 -0.41 29.12 -2.72 -0.08 -0.49 16 23 C 0.10 1.47 7.75 83.52 0.65 2.11 16 24 Cl 0.02 0.26 29.13 -2.72 -0.08 0.18 16 25 N -0.51 -6.36 4.76 -174.52 -0.83 -7.19 16 26 H 0.44 2.83 6.46 -92.70 -0.60 2.23 16 27 C 0.12 3.39 5.51 86.36 0.48 3.87 16 28 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 29 H 0.36 17.30 4.75 -92.71 -0.44 16.86 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.75 3.89 -2.39 -0.01 0.74 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.06 2.17 6.20 -2.39 -0.01 2.16 16 Total: -1.00 -77.02 354.53 1.98 -75.04 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.01 Total: 15.15 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 5.07 Total: 5.26 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -4.76 Total: -124.55 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.07 Total: -21.18 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.90 Total: 50.60 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.16 Total: -0.31 kcal Total: -77.02 1.98 -75.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266802323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.143 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds