Wall clock time and date at job start Wed Apr 1 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47215 * 2 1 4 4 N 1.46505 * 109.46577 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99595 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99889 * 359.97438 * 5 4 3 7 7 C 1.38812 * 119.99972 * 180.02562 * 5 4 3 8 8 N 1.31618 * 119.99952 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00125 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47234 * 89.99341 * 9 7 5 11 11 H 1.48493 * 109.46897 * 209.99787 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99077 * 9 7 5 13 13 N 1.46508 * 109.46750 * 120.00125 * 2 1 3 14 14 C 1.34773 * 119.99979 * 296.25385 * 13 2 1 15 15 O 1.21720 * 120.00095 * 4.58823 * 14 13 2 16 16 C 1.46535 * 119.99922 * 184.58764 * 14 13 2 17 17 C 1.37969 * 126.22227 * 179.97438 * 16 14 13 18 18 C 1.39789 * 107.12694 * 179.97438 * 17 16 14 19 19 Cl 1.73599 * 126.05997 * 180.02562 * 18 17 16 20 20 C 1.35723 * 107.87595 * 0.02562 * 18 17 16 21 21 Cl 1.73604 * 125.58090 * 180.02562 * 20 18 17 22 22 N 1.35662 * 108.83368 * 359.74911 * 20 18 17 23 23 H 0.96998 * 125.69823 * 180.24552 * 22 20 18 24 24 C 1.53001 * 109.46928 * 239.99621 * 2 1 3 25 25 C 1.52996 * 117.49947 * 12.47698 * 24 2 1 26 26 C 1.53001 * 117.50206 * 303.81664 * 24 2 1 27 27 H 1.09000 * 109.46780 * 300.00066 * 1 2 3 28 28 H 1.08998 * 109.46709 * 59.99695 * 1 2 3 29 29 H 1.08996 * 109.47641 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47531 * 299.99802 * 3 2 1 31 31 H 1.09000 * 109.47300 * 60.00252 * 3 2 1 32 32 H 0.96993 * 120.00452 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99876 * 180.02562 * 8 7 5 34 34 H 0.96996 * 119.99561 * 115.97601 * 13 2 1 35 35 H 1.07993 * 126.43245 * 359.97438 * 17 16 14 36 36 H 1.08996 * 115.54916 * 158.14349 * 24 2 1 37 37 H 1.09008 * 117.49681 * 0.02562 * 25 24 2 38 38 H 1.08998 * 117.50414 * 145.01477 * 25 24 2 39 39 H 1.08993 * 117.50164 * 214.98123 * 26 24 2 40 40 H 1.09001 * 117.49511 * 359.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1899 2.6282 -0.0002 6 1 3.6499 3.5635 0.0002 7 6 5.5780 2.6281 -0.0013 8 7 6.2360 1.4882 -0.0023 9 14 6.5121 4.2458 0.0000 10 1 6.7607 4.6728 1.4004 11 1 7.8090 4.0690 -0.7013 12 1 5.7091 5.2816 -0.6983 13 7 2.0183 -0.6907 1.1962 14 6 1.7561 -0.1879 2.4189 15 8 1.0440 0.7926 2.5338 16 6 2.3283 -0.8216 3.6098 17 6 2.1461 -0.4165 4.9160 18 6 2.8671 -1.2994 5.7252 19 17 2.9766 -1.2408 7.4568 20 6 3.4662 -2.2104 4.9171 21 17 4.4757 -3.5201 5.4456 22 7 3.1420 -1.9336 3.6292 23 1 3.4357 -2.4336 2.8516 24 6 2.0400 -0.7213 -1.2492 25 6 1.0262 -1.0213 -2.3551 26 6 1.5634 -2.1567 -1.4803 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.9901 0.6023 -0.0006 33 1 7.2060 1.4882 -0.0027 34 1 2.5268 -1.5120 1.1084 35 1 1.5571 0.4247 5.2504 36 1 3.0572 -0.4738 -1.5527 37 1 -0.0041 -0.7044 -2.1928 38 1 1.3764 -0.9715 -3.3861 39 1 2.2669 -2.8535 -1.9360 40 1 0.8869 -2.5873 -0.7420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267859114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:26 Heat of formation + Delta-G solvation = 20.496552 kcal Electronic energy + Delta-G solvation = -26071.960831 eV Core-core repulsion = 22167.924453 eV Total energy + Delta-G solvation = -3904.036378 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.65396 -41.11814 -38.91644 -37.90075 -37.52399 -36.36746 -35.13000 -33.23120 -32.27168 -31.51163 -29.85074 -27.57888 -25.49683 -24.34132 -23.66982 -23.10929 -22.04585 -21.49437 -20.34743 -19.95199 -19.22266 -17.74306 -17.04725 -16.75185 -16.59014 -16.26141 -15.93457 -15.64469 -15.49846 -15.19125 -14.95735 -14.79538 -14.43599 -14.16797 -13.80619 -13.70582 -13.21273 -13.09502 -13.00243 -12.86983 -12.79785 -12.49682 -12.46982 -12.25724 -12.09046 -12.02108 -11.95968 -11.77597 -11.30444 -11.09315 -10.97182 -10.76377 -10.18400 -10.07620 -9.36115 -8.93530 -7.95838 -5.20808 0.07767 0.32508 1.00902 1.08653 1.44229 1.45999 1.53550 1.86794 2.20004 2.27585 2.55056 3.00886 3.37911 3.58399 3.68476 3.74950 3.89464 3.94780 4.16173 4.22697 4.24952 4.46719 4.47947 4.62376 4.78348 4.88265 4.88456 4.97465 5.02534 5.03526 5.14979 5.22833 5.32152 5.32765 5.45656 5.49532 5.58074 5.88236 6.27156 6.51333 7.13223 7.35293 8.09570 8.37627 9.27037 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.004031 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3365.164575 B = 6945.117485 C = 8665.702159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.212 3.788 3 C 0.141 3.859 4 N -0.728 5.728 5 C -0.241 4.241 6 H 0.064 0.936 7 C -0.067 4.067 8 N -0.962 5.962 9 Si 0.964 3.036 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.273 1.273 13 N -0.698 5.698 14 C 0.595 3.405 15 O -0.547 6.547 16 C -0.019 4.019 17 C -0.100 4.100 18 C -0.110 4.110 19 Cl -0.024 7.024 20 C 0.103 3.897 21 Cl 0.019 6.981 22 N -0.505 5.505 23 H 0.439 0.561 24 C -0.176 4.176 25 C -0.162 4.162 26 C -0.157 4.157 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.022 0.978 31 H 0.025 0.975 32 H 0.377 0.623 33 H 0.250 0.750 34 H 0.403 0.597 35 H 0.165 0.835 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.324 -15.058 5.732 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.127 3.873 3 C 0.014 3.986 4 N -0.371 5.371 5 C -0.373 4.373 6 H 0.082 0.918 7 C -0.259 4.259 8 N -0.614 5.614 9 Si 0.793 3.207 10 H -0.220 1.220 11 H -0.218 1.218 12 H -0.198 1.198 13 N -0.349 5.349 14 C 0.382 3.618 15 O -0.425 6.425 16 C -0.133 4.133 17 C -0.126 4.126 18 C -0.144 4.144 19 Cl 0.005 6.995 20 C -0.043 4.043 21 Cl 0.048 6.952 22 N -0.107 5.107 23 H 0.281 0.719 24 C -0.195 4.195 25 C -0.199 4.199 26 C -0.194 4.194 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.239 0.761 35 H 0.183 0.817 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.116 0.884 39 H 0.123 0.877 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.688 -14.335 5.792 18.796 hybrid contribution 1.752 0.205 -0.119 1.768 sum -8.936 -14.130 5.673 17.655 Atomic orbital electron populations 1.22221 0.92530 1.03264 1.03244 1.19904 0.94409 0.90403 0.82587 1.21146 0.84274 0.95141 0.98036 1.42278 1.00726 1.04999 1.89143 1.19530 0.89601 0.87237 1.40897 0.91837 1.25350 0.97057 0.99641 1.03890 1.69760 1.06461 1.25408 1.59723 0.85283 0.78072 0.80092 0.77222 1.21959 1.21814 1.19810 1.45738 1.56422 1.28037 1.04662 1.16881 0.79985 0.82897 0.82063 1.90794 1.38946 1.26638 1.86130 1.20353 1.03921 0.93541 0.95495 1.21229 1.01608 1.00481 0.89296 1.19621 1.07757 1.00439 0.86621 1.98336 1.97545 1.98143 1.05524 1.20639 1.02411 0.96485 0.84728 1.98428 1.65198 1.43628 1.87970 1.41790 1.38092 1.23715 1.07113 0.71894 1.22253 0.99941 1.00161 0.97167 1.23192 0.99065 1.02171 0.95489 1.23066 1.03428 0.89892 1.02984 0.92291 0.90230 0.90198 0.96036 0.95684 0.78991 0.94137 0.76149 0.81736 0.89480 0.86783 0.88368 0.87733 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.91 7.09 71.98 0.51 -3.40 16 2 C 0.21 6.42 0.54 3.60 0.00 6.43 16 3 C 0.14 5.92 4.91 86.38 0.42 6.35 16 4 N -0.73 -36.57 5.03 -343.45 -1.73 -38.30 16 5 C -0.24 -13.72 9.99 84.03 0.84 -12.89 16 6 H 0.06 3.62 7.83 -2.91 -0.02 3.59 16 7 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 8 N -0.96 -57.61 13.06 21.65 0.28 -57.33 16 9 Si 0.96 47.05 29.55 68.60 2.03 49.08 16 10 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 11 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 13 N -0.70 -19.80 4.73 -426.94 -2.02 -21.82 16 14 C 0.59 19.47 7.19 86.41 0.62 20.09 16 15 O -0.55 -21.51 13.11 -4.41 -0.06 -21.56 16 16 C -0.02 -0.53 7.05 40.30 0.28 -0.25 16 17 C -0.10 -2.82 10.64 22.58 0.24 -2.58 16 18 C -0.11 -2.81 6.66 22.06 0.15 -2.66 16 19 Cl -0.02 -0.55 29.12 -2.72 -0.08 -0.63 16 20 C 0.10 2.39 7.75 83.52 0.65 3.04 16 21 Cl 0.02 0.37 29.13 -2.72 -0.08 0.29 16 22 N -0.51 -11.39 6.01 -174.51 -1.05 -12.44 16 23 H 0.44 7.46 8.20 -92.71 -0.76 6.70 16 24 C -0.18 -4.74 4.87 -10.79 -0.05 -4.80 16 25 C -0.16 -3.31 9.63 30.62 0.29 -3.01 16 26 C -0.16 -2.87 9.71 30.62 0.30 -2.57 16 27 H 0.06 1.77 6.29 -2.39 -0.02 1.75 16 28 H 0.08 1.82 6.79 -2.39 -0.02 1.80 16 29 H 0.08 1.60 6.99 -2.39 -0.02 1.58 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.03 1.19 6.05 -2.39 -0.01 1.18 16 32 H 0.38 19.32 6.63 -92.71 -0.61 18.70 16 33 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.40 9.20 7.51 -92.71 -0.70 8.51 16 35 H 0.17 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.09 3.03 7.08 -2.39 -0.02 3.02 16 37 H 0.11 2.03 5.88 -2.38 -0.01 2.02 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.11 1.65 7.37 -2.39 -0.02 1.64 16 Total: -1.00 -69.09 360.00 1.08 -68.01 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.94 Total: 34.33 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 4.72 Total: 0.37 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -4.51 Total: -129.88 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.06 Total: -21.56 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.16 Total: -0.34 kcal Total: -69.09 1.08 -68.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267859114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.506 kcal (2) G-P(sol) polarization free energy of solvation -69.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds