Wall clock time and date at job start Wed Apr 1 2020 03:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21523 * 120.00225 * 359.97438 * 8 7 6 10 10 C 1.48003 * 119.99840 * 179.97438 * 8 7 6 11 11 C 1.39975 * 120.93721 * 89.71706 * 10 8 7 12 12 Cl 1.73599 * 120.51620 * 0.02562 * 11 10 8 13 13 C 1.38299 * 118.97202 * 179.70799 * 11 10 8 14 14 N 1.31789 * 120.91686 * 0.58379 * 13 11 10 15 15 C 1.31786 * 122.09498 * 359.71338 * 14 13 11 16 16 C 1.38289 * 120.91597 * 359.97438 * 15 14 13 17 17 Cl 1.73594 * 120.51281 * 180.02562 * 16 15 14 18 18 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 19 19 C 1.36931 * 119.99788 * 84.99932 * 18 4 2 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 4 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 4 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 28 28 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 29 29 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 31 31 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 33 33 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 34 34 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 35 35 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 36 36 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 37 37 H 1.08010 * 119.53900 * 180.31916 * 13 11 10 38 38 H 1.07995 * 119.54232 * 180.02562 * 15 14 13 39 39 H 0.97000 * 119.99792 * 264.99726 * 18 4 2 40 40 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0433 -4.7528 1.8252 10 6 2.3965 -4.9170 3.7246 11 6 1.7594 -4.9407 4.9707 12 17 0.2540 -4.1089 5.2071 13 6 2.3443 -5.6426 6.0089 14 7 3.4894 -6.2726 5.8399 15 6 4.1257 -6.2710 4.6858 16 6 3.6109 -5.6004 3.5915 17 17 4.4575 -5.6058 2.0760 18 7 3.5050 -0.7218 1.2488 19 6 4.1901 0.3528 1.7498 20 1 3.6506 1.2005 2.1454 21 6 5.5783 0.3498 1.7547 22 7 6.2359 -0.6835 1.2730 23 14 6.5130 1.8124 2.4451 24 1 5.5483 2.8366 2.9205 25 1 7.3617 1.3669 3.5792 26 1 7.3717 2.3968 1.3839 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 0.4436 -2.1651 1.3387 35 1 1.8183 -2.6512 0.3177 36 1 2.7232 -2.4351 2.9844 37 1 1.8579 -5.6713 6.9729 38 1 5.0618 -6.8016 4.5931 39 1 3.9897 -1.4834 0.8938 40 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271895078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:04 Heat of formation + Delta-G solvation = -27.346940 kcal Electronic energy + Delta-G solvation = -25923.882580 eV Core-core repulsion = 22017.771553 eV Total energy + Delta-G solvation = -3906.111028 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.90030 -40.45502 -38.76217 -38.05617 -37.77489 -35.41600 -34.91171 -33.89099 -32.24435 -32.14118 -29.69991 -27.50140 -26.49830 -25.26115 -24.88898 -23.38024 -21.94972 -20.85180 -19.64627 -18.88523 -18.48774 -17.91853 -17.45779 -16.92274 -16.60334 -15.98386 -15.78941 -15.74530 -15.54990 -15.26551 -14.95914 -14.87344 -14.29924 -13.87700 -13.61778 -13.58322 -13.43050 -13.04895 -12.90347 -12.88041 -12.79774 -12.71274 -12.46704 -12.28578 -12.22937 -11.96648 -11.83781 -11.61508 -11.42126 -11.28302 -10.99813 -10.85357 -10.78969 -10.17392 -10.14096 -8.93933 -7.85452 -5.12162 -0.62677 -0.52544 0.48629 0.86750 1.21939 1.48495 1.51776 1.58391 1.90416 2.19704 2.60149 3.13940 3.26209 3.34774 3.48163 3.50368 3.81102 3.85607 3.91189 4.15656 4.29700 4.31684 4.44166 4.49935 4.63553 4.75317 4.93025 4.97798 4.99561 5.05667 5.15620 5.24157 5.28650 5.44710 5.62235 5.66662 5.78311 6.29973 6.34118 6.37915 6.90651 7.42814 8.13394 8.38706 9.36965 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.009566 B = 0.004294 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.206429 B = 6519.163248 C = 7747.917872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.172 3.828 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.690 5.690 8 C 0.565 3.435 9 O -0.553 6.553 10 C -0.079 4.079 11 C -0.060 4.060 12 Cl -0.023 7.023 13 C 0.130 3.870 14 N -0.448 5.448 15 C 0.128 3.872 16 C -0.065 4.065 17 Cl -0.030 7.030 18 N -0.726 5.726 19 C -0.212 4.212 20 H 0.079 0.921 21 C -0.068 4.068 22 N -0.962 5.962 23 Si 0.953 3.047 24 H -0.267 1.267 25 H -0.300 1.300 26 H -0.303 1.303 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.410 0.590 37 H 0.213 0.787 38 H 0.205 0.795 39 H 0.373 0.627 40 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 -8.642 8.055 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.340 5.340 8 C 0.349 3.651 9 O -0.432 6.432 10 C -0.092 4.092 11 C -0.090 4.090 12 Cl 0.006 6.994 13 C -0.027 4.027 14 N -0.157 5.157 15 C -0.029 4.029 16 C -0.095 4.095 17 Cl -0.001 7.001 18 N -0.366 5.366 19 C -0.344 4.344 20 H 0.097 0.903 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.784 3.216 24 H -0.192 1.192 25 H -0.228 1.228 26 H -0.231 1.231 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.246 0.754 37 H 0.229 0.771 38 H 0.221 0.779 39 H 0.205 0.795 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.729 -9.198 8.177 16.327 hybrid contribution 1.056 1.285 -0.779 1.837 sum -9.672 -7.913 7.398 14.522 Atomic orbital electron populations 1.21856 0.93958 1.01908 1.02177 1.21616 0.95880 0.96792 0.98395 1.21724 1.01699 0.95481 1.00241 1.20690 0.84064 0.91939 0.96947 0.92384 1.21771 0.98286 0.92185 0.87990 1.45903 1.47439 1.10002 1.30615 1.17916 0.81001 0.82294 0.83921 1.90784 1.36994 1.68346 1.47065 1.20317 0.94869 0.99459 0.94545 1.22240 0.92055 1.00771 0.93890 1.98425 1.28380 1.76057 1.96574 1.23468 0.90539 0.89722 0.99011 1.67970 1.07663 1.17073 1.22969 1.23346 1.00174 0.94223 0.85173 1.22331 0.93644 1.01824 0.91668 1.98464 1.75714 1.97095 1.28855 1.42566 1.00417 1.20141 1.73489 1.19462 0.88714 0.96477 1.29757 0.90343 1.25293 0.97574 0.99624 1.03600 1.69802 1.06242 1.31442 1.53829 0.85370 0.78937 0.80252 0.77011 1.19171 1.22801 1.23113 0.92206 0.92131 0.92262 0.93057 0.93171 0.93122 0.93492 0.89396 0.92654 0.75362 0.77060 0.77859 0.79493 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 8.84 71.98 0.64 -2.78 16 2 C -0.11 -3.30 2.69 -10.80 -0.03 -3.33 16 3 C -0.13 -4.47 8.26 71.98 0.59 -3.87 16 4 C 0.17 5.92 2.18 44.99 0.10 6.01 16 5 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 6 C 0.12 3.87 4.73 86.38 0.41 4.28 16 7 N -0.69 -22.44 5.39 -465.81 -2.51 -24.95 16 8 C 0.56 18.58 5.63 86.83 0.49 19.06 16 9 O -0.55 -21.06 17.10 -3.79 -0.06 -21.13 16 10 C -0.08 -2.26 5.67 -19.85 -0.11 -2.37 16 11 C -0.06 -1.39 6.38 22.71 0.14 -1.24 16 12 Cl -0.02 -0.51 28.17 -2.72 -0.08 -0.59 16 13 C 0.13 2.41 10.98 84.71 0.93 3.34 16 14 N -0.45 -9.17 10.33 -195.81 -2.02 -11.19 16 15 C 0.13 2.71 10.98 84.71 0.93 3.64 16 16 C -0.06 -1.72 6.38 22.70 0.14 -1.58 16 17 Cl -0.03 -0.90 28.17 -2.72 -0.08 -0.98 16 18 N -0.73 -31.79 4.44 -322.93 -1.43 -33.23 16 19 C -0.21 -10.36 7.57 84.04 0.64 -9.72 16 20 H 0.08 3.71 7.40 -2.91 -0.02 3.69 16 21 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 22 N -0.96 -55.10 13.06 21.65 0.28 -54.82 16 23 Si 0.95 43.87 29.55 68.60 2.03 45.90 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 26 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.35 6.55 -2.39 -0.02 1.34 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.05 2.05 6.01 -2.39 -0.01 2.03 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 2.52 6.71 -2.38 -0.02 2.50 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.41 13.91 8.13 -92.71 -0.75 13.16 16 37 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.37 18.32 7.80 -92.71 -0.72 17.60 16 40 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -61.61 367.27 1.09 -60.52 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -0.38 Total: 32.17 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.34 Total: 8.29 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -5.68 Total: -124.18 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.13 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.15 Total: -1.57 kcal Total: -61.61 1.09 -60.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271895078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.169 kcal (2) G-P(sol) polarization free energy of solvation -61.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds