Wall clock time and date at job start Wed Apr 1 2020 03:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 6 6 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 7 7 N 1.46500 * 109.47520 * 185.00200 * 6 4 2 8 8 C 1.34772 * 120.00336 * 180.02562 * 7 6 4 9 9 O 1.21534 * 120.00017 * 359.97438 * 8 7 6 10 10 C 1.47996 * 120.00377 * 180.02562 * 8 7 6 11 11 C 1.39975 * 120.94037 * 89.71478 * 10 8 7 12 12 Cl 1.73595 * 120.51365 * 0.02562 * 11 10 8 13 13 C 1.38304 * 118.97560 * 179.71328 * 11 10 8 14 14 N 1.31783 * 120.91251 * 0.57892 * 13 11 10 15 15 C 1.31791 * 122.09991 * 359.71916 * 14 13 11 16 16 C 1.38291 * 120.91249 * 359.97367 * 15 14 13 17 17 Cl 1.73597 * 120.51332 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47023 * 60.00568 * 4 2 1 19 19 C 1.36931 * 119.99971 * 274.99678 * 18 4 2 20 20 H 1.08005 * 120.00425 * 359.97438 * 19 18 4 21 21 C 1.38812 * 120.00390 * 180.02562 * 19 18 4 22 22 N 1.31624 * 119.99556 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00553 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47166 * 89.99808 * 23 21 19 25 25 H 1.48501 * 109.47423 * 210.00188 * 23 21 19 26 26 H 1.48508 * 109.46891 * 329.99990 * 23 21 19 27 27 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 28 28 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 29 29 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47514 * 240.00129 * 2 1 3 31 31 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 33 33 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 34 34 H 1.09004 * 109.47346 * 305.00346 * 6 4 2 35 35 H 1.09002 * 109.47196 * 65.00121 * 6 4 2 36 36 H 0.96995 * 119.99638 * 359.97438 * 7 6 4 37 37 H 1.07998 * 119.54271 * 180.32242 * 13 11 10 38 38 H 1.07995 * 119.54753 * 179.97438 * 15 14 13 39 39 H 0.97004 * 120.00223 * 94.99655 * 18 4 2 40 40 H 0.96997 * 119.99679 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6765 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2497 7 7 4.0584 -1.5128 2.3811 8 6 5.3834 -1.6532 2.5834 9 8 6.1731 -1.1230 1.8269 10 6 5.8768 -2.4540 3.7260 11 6 6.1123 -3.8275 3.5940 12 17 5.8306 -4.6284 2.0798 13 6 6.5790 -4.5353 4.6866 14 7 6.7906 -3.9363 5.8412 15 6 6.5765 -2.6470 6.0109 16 6 6.1157 -1.8605 4.9710 17 17 5.8377 -0.1631 5.2059 18 7 1.5517 -2.1024 1.2493 19 6 0.3102 -2.3897 1.7504 20 1 -0.3090 -1.5982 2.1461 21 6 -0.1523 -3.6985 1.7509 22 7 0.6024 -4.6633 1.2692 23 14 -1.8462 -4.0904 2.4338 24 1 -2.8524 -3.9978 1.3455 25 1 -1.8481 -5.4657 2.9940 26 1 -2.1849 -3.1192 3.5050 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 3.9337 -1.1547 0.3183 35 1 3.9329 0.3032 1.3394 36 1 3.4281 -1.9357 2.9850 37 1 6.7687 -5.5944 4.5935 38 1 6.7634 -2.1985 6.9754 39 1 2.1079 -2.8135 0.8942 40 1 0.2794 -5.5779 1.2698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271895080.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:08 Heat of formation + Delta-G solvation = -27.263223 kcal Electronic energy + Delta-G solvation = -25922.750105 eV Core-core repulsion = 22016.642708 eV Total energy + Delta-G solvation = -3906.107398 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89931 -40.45368 -38.76112 -38.05551 -37.77413 -35.41571 -34.90954 -33.89050 -32.24348 -32.14003 -29.70010 -27.50141 -26.49715 -25.25953 -24.88840 -23.37946 -21.94939 -20.85250 -19.64512 -18.88373 -18.48690 -17.91767 -17.45789 -16.91952 -16.60176 -15.98728 -15.78860 -15.74487 -15.55134 -15.26071 -14.95712 -14.87329 -14.29861 -13.87630 -13.61712 -13.58241 -13.43243 -13.04830 -12.90312 -12.83711 -12.79697 -12.72083 -12.48781 -12.28554 -12.22861 -11.98532 -11.84381 -11.61506 -11.42096 -11.28225 -10.99670 -10.84944 -10.78302 -10.17374 -10.14009 -8.93795 -7.85167 -5.11957 -0.62617 -0.52484 0.48717 0.86833 1.21941 1.49538 1.51749 1.57647 1.90442 2.19775 2.60384 3.13995 3.26272 3.34823 3.48196 3.50416 3.81189 3.85609 3.91348 4.15712 4.29665 4.31645 4.44148 4.50023 4.63479 4.75305 4.92980 4.97706 4.99655 5.05614 5.15522 5.24109 5.28590 5.44650 5.62038 5.66512 5.78158 6.30030 6.34268 6.37993 6.90688 7.42954 8.13598 8.38917 9.37058 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.009579 B = 0.004291 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.453010 B = 6524.382970 C = 7756.311687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.105 4.105 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.690 5.690 8 C 0.565 3.435 9 O -0.553 6.553 10 C -0.079 4.079 11 C -0.065 4.065 12 Cl -0.030 7.030 13 C 0.128 3.872 14 N -0.448 5.448 15 C 0.130 3.870 16 C -0.060 4.060 17 Cl -0.024 7.024 18 N -0.726 5.726 19 C -0.214 4.214 20 H 0.078 0.922 21 C -0.068 4.068 22 N -0.962 5.962 23 Si 0.953 3.047 24 H -0.295 1.295 25 H -0.304 1.304 26 H -0.271 1.271 27 H 0.046 0.954 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.410 0.590 37 H 0.205 0.795 38 H 0.213 0.787 39 H 0.373 0.627 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.664 6.961 8.102 15.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.127 4.127 3 C -0.199 4.199 4 C 0.064 3.936 5 H 0.076 0.924 6 C -0.002 4.002 7 N -0.340 5.340 8 C 0.349 3.651 9 O -0.432 6.432 10 C -0.092 4.092 11 C -0.095 4.095 12 Cl -0.001 7.001 13 C -0.029 4.029 14 N -0.157 5.157 15 C -0.027 4.027 16 C -0.090 4.090 17 Cl 0.006 6.994 18 N -0.366 5.366 19 C -0.345 4.345 20 H 0.096 0.904 21 C -0.261 4.261 22 N -0.613 5.613 23 Si 0.785 3.215 24 H -0.223 1.223 25 H -0.231 1.231 26 H -0.196 1.196 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.221 0.779 38 H 0.229 0.771 39 H 0.205 0.795 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.267 6.972 8.230 16.335 hybrid contribution -1.578 -0.542 -0.799 1.850 sum 10.689 6.430 7.430 14.519 Atomic orbital electron populations 1.21726 0.95417 1.01753 1.00255 1.21617 0.96389 0.96281 0.98399 1.21857 1.00938 0.94923 1.02178 1.20687 0.89780 0.86236 0.96935 0.92395 1.21768 0.94855 0.95613 0.87992 1.45899 1.05761 1.51697 1.30594 1.17918 0.83131 0.80166 0.83923 1.90787 1.56088 1.49239 1.47089 1.20314 1.00919 0.93386 0.94567 1.22337 1.03782 0.91652 0.91698 1.98465 1.94197 1.78493 1.28971 1.23351 0.92239 1.02132 0.85184 1.67968 1.14230 1.10520 1.22954 1.23462 0.92005 0.88262 0.99004 1.22238 1.03936 0.88878 0.93903 1.98424 1.94356 1.10072 1.96595 1.42555 1.17248 1.03295 1.73498 1.19424 0.93200 0.92013 1.29906 0.90379 1.25294 1.00900 0.96278 1.03588 1.69797 1.38080 0.99613 1.53817 0.85437 0.81473 0.76639 0.77993 1.22326 1.23075 1.19578 0.93446 0.93138 0.93206 0.93070 0.92261 0.92129 0.92205 0.92655 0.89397 0.75360 0.77852 0.77065 0.79494 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.26 71.98 0.59 -3.88 16 2 C -0.11 -3.31 2.69 -10.79 -0.03 -3.33 16 3 C -0.14 -3.42 8.84 71.98 0.64 -2.79 16 4 C 0.17 5.92 2.18 44.99 0.10 6.02 16 5 H 0.06 1.99 8.08 -2.39 -0.02 1.97 16 6 C 0.12 3.87 4.73 86.38 0.41 4.28 16 7 N -0.69 -22.44 5.39 -465.83 -2.51 -24.95 16 8 C 0.56 18.57 5.63 86.83 0.49 19.06 16 9 O -0.55 -21.07 17.10 -3.82 -0.07 -21.14 16 10 C -0.08 -2.25 5.67 -19.85 -0.11 -2.37 16 11 C -0.06 -1.72 6.38 22.71 0.14 -1.58 16 12 Cl -0.03 -0.90 28.17 -2.72 -0.08 -0.98 16 13 C 0.13 2.71 10.98 84.72 0.93 3.64 16 14 N -0.45 -9.16 10.33 -195.81 -2.02 -11.18 16 15 C 0.13 2.41 10.98 84.71 0.93 3.34 16 16 C -0.06 -1.38 6.38 22.70 0.14 -1.24 16 17 Cl -0.02 -0.52 28.17 -2.72 -0.08 -0.59 16 18 N -0.73 -31.82 4.44 -322.94 -1.43 -33.25 16 19 C -0.21 -10.44 7.57 84.03 0.64 -9.80 16 20 H 0.08 3.69 7.40 -2.91 -0.02 3.67 16 21 C -0.07 -3.60 5.50 84.86 0.47 -3.14 16 22 N -0.96 -55.11 13.06 21.65 0.28 -54.82 16 23 Si 0.95 43.86 29.55 68.60 2.03 45.89 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 2.04 6.01 -2.39 -0.01 2.02 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.35 6.54 -2.39 -0.02 1.34 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 2.52 6.71 -2.39 -0.02 2.51 16 36 H 0.41 13.92 8.13 -92.71 -0.75 13.16 16 37 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.21 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.37 18.33 7.80 -92.71 -0.72 17.61 16 40 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -61.57 367.27 1.09 -60.48 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -0.38 Total: 32.32 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.34 Total: 8.22 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -5.68 Total: -124.21 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.07 Total: -21.14 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.15 Total: -1.57 kcal Total: -61.57 1.09 -60.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271895080.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.216 kcal (2) G-P(sol) polarization free energy of solvation -61.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds