Wall clock time and date at job start Wed Apr 1 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48506 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47393 * 300.00330 * 3 2 1 6 6 H 1.48503 * 109.47217 * 60.00347 * 3 2 1 7 7 C 1.38811 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99735 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99975 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46872 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.53495 * 307.60750 * 11 10 9 13 13 C 1.54889 * 110.48956 * 70.22263 * 11 10 9 14 14 C 1.54885 * 102.74759 * 156.61927 * 13 11 10 15 15 C 1.54264 * 104.20032 * 322.05849 * 14 13 11 16 16 C 1.53877 * 106.59718 * 23.60997 * 15 14 13 17 17 H 1.08997 * 110.03481 * 240.66704 * 16 15 14 18 18 N 1.46505 * 110.03386 * 119.28483 * 16 15 14 19 19 C 1.34777 * 119.99724 * 86.45651 * 18 16 15 20 20 O 1.21713 * 120.00188 * 359.97438 * 19 18 16 21 21 C 1.46548 * 119.99458 * 179.72463 * 19 18 16 22 22 C 1.37958 * 126.21984 * 179.97438 * 21 19 18 23 23 C 1.39780 * 107.12798 * 179.84737 * 22 21 19 24 24 Cl 1.73605 * 126.06321 * 180.15787 * 23 22 21 25 25 C 1.35718 * 107.87844 * 0.42010 * 23 22 21 26 26 Cl 1.73598 * 125.59052 * 179.70824 * 25 23 22 27 27 N 1.35670 * 108.82956 * 359.73603 * 25 23 22 28 28 H 0.96993 * 125.69540 * 179.97438 * 27 25 23 29 29 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99695 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47588 * 60.00241 * 10 9 7 32 32 H 1.08996 * 109.47060 * 299.99601 * 10 9 7 33 33 H 1.09001 * 110.75099 * 38.30624 * 13 11 10 34 34 H 1.08998 * 110.75598 * 274.93432 * 13 11 10 35 35 H 1.08999 * 110.48964 * 203.38036 * 14 13 11 36 36 H 1.09004 * 110.48675 * 80.73823 * 14 13 11 37 37 H 1.09000 * 110.03392 * 264.32792 * 15 14 13 38 38 H 1.09003 * 110.03716 * 142.89061 * 15 14 13 39 39 H 0.97000 * 119.99792 * 266.45219 * 18 16 15 40 40 H 1.08007 * 126.43644 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 1 0.3414 -4.7057 0.8072 13 6 0.3387 -4.9124 -1.3668 14 6 -0.1119 -6.3935 -1.4147 15 6 1.0594 -7.1663 -0.7740 16 6 1.8069 -6.1657 0.1248 17 1 2.8373 -6.0571 -0.2137 18 7 1.7818 -6.6246 1.5159 19 6 2.7251 -7.4782 1.9609 20 8 3.5974 -7.8682 1.2071 21 6 2.7034 -7.9325 3.3541 22 6 3.6000 -8.8003 3.9425 23 6 3.2093 -8.9544 5.2757 24 17 4.0011 -9.9401 6.4653 25 6 2.0978 -8.2013 5.4738 26 17 1.2245 -8.0624 6.9678 27 7 1.7804 -7.5752 4.3128 28 1 1.0290 -6.9764 4.1798 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.6845 -3.7146 0.8894 32 1 2.6845 -3.7146 -0.8905 33 1 1.0249 -4.6908 -2.1842 34 1 -0.5230 -4.2455 -1.3928 35 1 -0.2615 -6.7137 -2.4458 36 1 -1.0241 -6.5337 -0.8346 37 1 1.7269 -7.5427 -1.5492 38 1 0.6780 -7.9934 -0.1751 39 1 1.0863 -6.3140 2.1165 40 1 4.4462 -9.2706 3.4636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272291581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:28 Heat of formation + Delta-G solvation = -4.892207 kcal Electronic energy + Delta-G solvation = -24891.351554 eV Core-core repulsion = 20986.214236 eV Total energy + Delta-G solvation = -3905.137317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.90772 -39.84624 -37.98540 -37.22469 -36.80685 -34.60918 -33.80047 -31.56765 -31.46814 -29.85901 -28.66651 -27.49514 -24.65775 -23.36231 -22.15267 -21.37016 -20.94011 -20.42706 -20.03074 -19.01244 -17.20992 -16.65446 -16.49063 -15.83549 -15.26244 -15.10187 -14.63920 -14.59160 -14.30039 -14.13564 -13.76530 -13.69591 -13.51453 -13.23558 -12.91601 -12.30896 -12.25382 -12.20164 -11.85696 -11.83853 -11.44502 -11.26197 -11.03636 -10.91620 -10.84119 -10.58572 -10.47532 -10.38592 -10.28244 -10.01898 -9.76638 -9.45546 -9.23419 -8.92355 -8.65089 -6.97181 -5.81754 -3.10190 0.80822 1.02788 1.72465 1.81812 2.69449 2.96845 3.01807 3.40174 3.46606 3.48396 4.35533 4.43088 4.51794 4.66524 4.73019 4.93387 4.97445 5.21617 5.35153 5.47350 5.53435 5.57128 5.66922 5.71352 5.76521 5.81128 5.97063 5.97945 6.04370 6.12168 6.19566 6.40002 6.44735 6.47887 6.49492 6.69381 6.80900 7.23463 7.66908 7.90314 8.37280 9.48928 10.05609 10.40532 11.41151 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.002491 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.685083 B =11236.114731 C =12551.740912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.161 3.839 11 C -0.102 4.102 12 H 0.078 0.922 13 C -0.110 4.110 14 C -0.125 4.125 15 C -0.131 4.131 16 C 0.147 3.853 17 H 0.098 0.902 18 N -0.716 5.716 19 C 0.590 3.410 20 O -0.518 6.518 21 C -0.013 4.013 22 C -0.088 4.088 23 C -0.099 4.099 24 Cl -0.028 7.028 25 C 0.099 3.901 26 Cl 0.005 6.995 27 N -0.521 5.521 28 H 0.429 0.571 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.394 0.606 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -21.662 9.675 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.033 3.967 11 C -0.121 4.121 12 H 0.096 0.904 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.043 3.957 17 H 0.116 0.884 18 N -0.366 5.366 19 C 0.375 3.625 20 O -0.393 6.393 21 C -0.127 4.127 22 C -0.114 4.114 23 C -0.134 4.134 24 Cl 0.000 7.000 25 C -0.046 4.046 26 Cl 0.034 6.966 27 N -0.122 5.122 28 H 0.269 0.731 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.228 0.772 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.109 -21.775 9.273 23.693 hybrid contribution -0.697 1.416 0.689 1.722 sum 0.412 -20.359 9.962 22.669 Atomic orbital electron populations 1.69665 1.05099 1.25547 1.57969 1.24729 0.95534 0.97693 1.03026 0.86126 0.78862 0.84081 0.77200 1.20520 1.21824 1.21882 1.19274 0.91081 0.84142 1.42449 0.91177 1.42323 1.05785 0.99864 1.89508 1.20687 0.92878 0.85154 0.97985 1.22444 0.97875 0.93089 0.98712 0.90371 1.22460 1.00567 0.95249 0.96560 1.22392 0.97509 0.95927 1.00467 1.22549 0.97629 0.97799 0.99018 1.21814 1.01600 0.93163 0.79151 0.88428 1.46100 1.29920 1.46896 1.13663 1.16801 0.82065 0.79184 0.84403 1.90887 1.36229 1.56841 1.55383 1.20544 0.95419 1.06443 0.90323 1.21154 1.00335 0.98947 0.90949 1.19606 0.97447 1.03762 0.92592 1.98354 1.78787 1.67826 1.55006 1.20598 0.97331 1.02493 0.84168 1.98438 1.75118 1.97156 1.25924 1.41918 1.25076 1.37713 1.07509 0.73117 0.93580 0.78298 0.96505 0.95967 0.90887 0.90628 0.91661 0.91888 0.91017 0.91717 0.77189 0.81398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -17.71 5.49 -59.91 -0.33 -18.04 16 10 C 0.16 3.07 5.54 -4.04 -0.02 3.05 16 11 C -0.10 -1.46 2.58 -88.96 -0.23 -1.69 16 12 H 0.08 1.09 7.73 -51.93 -0.40 0.69 16 13 C -0.11 -1.52 6.19 -24.74 -0.15 -1.67 16 14 C -0.13 -1.36 6.83 -25.08 -0.17 -1.53 16 15 C -0.13 -1.45 6.59 -25.61 -0.17 -1.62 16 16 C 0.15 1.83 2.80 -66.81 -0.19 1.65 16 17 H 0.10 1.40 7.30 -51.93 -0.38 1.02 16 18 N -0.72 -7.70 4.99 -54.06 -0.27 -7.97 16 19 C 0.59 7.16 7.77 -12.91 -0.10 7.06 16 20 O -0.52 -8.00 16.56 5.18 0.09 -7.91 16 21 C -0.01 -0.14 7.06 -81.93 -0.58 -0.71 16 22 C -0.09 -0.90 10.64 -39.11 -0.42 -1.31 16 23 C -0.10 -0.97 6.66 -39.91 -0.27 -1.24 16 24 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 25 C 0.10 0.88 7.75 -16.76 -0.13 0.75 16 26 Cl 0.01 0.04 29.13 -51.86 -1.51 -1.47 16 27 N -0.52 -4.22 6.01 -6.51 -0.04 -4.25 16 28 H 0.43 2.40 8.19 -40.82 -0.33 2.06 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.38 9.67 7.64 -40.82 -0.31 9.36 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.44 8.02 -51.93 -0.42 0.03 16 33 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.68 7.92 -51.93 -0.41 0.27 16 39 H 0.39 3.31 7.47 -40.82 -0.30 3.01 16 40 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 368.25 15.07 5.55 5.55 Total: -1.00 -31.67 368.25 -10.05 -41.72 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.05 Total: 8.34 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.67 Total: -4.47 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.09 Total: -57.16 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.09 Total: -7.91 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -3.02 Total: -3.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.67 -10.05 -41.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272291581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.825 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds