Wall clock time and date at job start Wed Apr 1 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00128 * 2 1 4 4 H 1.48506 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47393 * 300.00330 * 3 2 1 6 6 H 1.48503 * 109.47217 * 60.00347 * 3 2 1 7 7 C 1.38811 * 119.99573 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99735 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99975 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46872 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.53495 * 307.60750 * 11 10 9 13 13 C 1.54889 * 110.48956 * 70.22263 * 11 10 9 14 14 C 1.54885 * 102.74759 * 156.61927 * 13 11 10 15 15 C 1.54264 * 104.20032 * 322.05849 * 14 13 11 16 16 C 1.53877 * 106.59718 * 23.60997 * 15 14 13 17 17 H 1.08997 * 110.03481 * 240.66704 * 16 15 14 18 18 N 1.46505 * 110.03386 * 119.28483 * 16 15 14 19 19 C 1.34777 * 119.99724 * 86.45651 * 18 16 15 20 20 O 1.21713 * 120.00188 * 359.97438 * 19 18 16 21 21 C 1.46548 * 119.99458 * 179.72463 * 19 18 16 22 22 C 1.37958 * 126.21984 * 179.97438 * 21 19 18 23 23 C 1.39780 * 107.12798 * 179.84737 * 22 21 19 24 24 Cl 1.73605 * 126.06321 * 180.15787 * 23 22 21 25 25 C 1.35718 * 107.87844 * 0.42010 * 23 22 21 26 26 Cl 1.73598 * 125.59052 * 179.70824 * 25 23 22 27 27 N 1.35670 * 108.82956 * 359.73603 * 25 23 22 28 28 H 0.96993 * 125.69540 * 179.97438 * 27 25 23 29 29 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 30 30 H 0.97006 * 119.99695 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47588 * 60.00241 * 10 9 7 32 32 H 1.08996 * 109.47060 * 299.99601 * 10 9 7 33 33 H 1.09001 * 110.75099 * 38.30624 * 13 11 10 34 34 H 1.08998 * 110.75598 * 274.93432 * 13 11 10 35 35 H 1.08999 * 110.48964 * 203.38036 * 14 13 11 36 36 H 1.09004 * 110.48675 * 80.73823 * 14 13 11 37 37 H 1.09000 * 110.03392 * 264.32792 * 15 14 13 38 38 H 1.09003 * 110.03716 * 142.89061 * 15 14 13 39 39 H 0.97000 * 119.99792 * 266.45219 * 18 16 15 40 40 H 1.08007 * 126.43644 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0636 -4.8197 -0.0012 12 1 0.3414 -4.7057 0.8072 13 6 0.3387 -4.9124 -1.3668 14 6 -0.1119 -6.3935 -1.4147 15 6 1.0594 -7.1663 -0.7740 16 6 1.8069 -6.1657 0.1248 17 1 2.8373 -6.0571 -0.2137 18 7 1.7818 -6.6246 1.5159 19 6 2.7251 -7.4782 1.9609 20 8 3.5974 -7.8682 1.2071 21 6 2.7034 -7.9325 3.3541 22 6 3.6000 -8.8003 3.9425 23 6 3.2093 -8.9544 5.2757 24 17 4.0011 -9.9401 6.4653 25 6 2.0978 -8.2013 5.4738 26 17 1.2245 -8.0624 6.9678 27 7 1.7804 -7.5752 4.3128 28 1 1.0290 -6.9764 4.1798 29 1 -0.4850 0.8401 0.0004 30 1 0.3554 -2.3880 -0.0005 31 1 2.6845 -3.7146 0.8894 32 1 2.6845 -3.7146 -0.8905 33 1 1.0249 -4.6908 -2.1842 34 1 -0.5230 -4.2455 -1.3928 35 1 -0.2615 -6.7137 -2.4458 36 1 -1.0241 -6.5337 -0.8346 37 1 1.7269 -7.5427 -1.5492 38 1 0.6780 -7.9934 -0.1751 39 1 1.0863 -6.3140 2.1165 40 1 4.4462 -9.2706 3.4636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272291581.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:28 Heat of formation + Delta-G solvation = -24.983925 kcal Electronic energy + Delta-G solvation = -24892.222796 eV Core-core repulsion = 20986.214236 eV Total energy + Delta-G solvation = -3906.008560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.68323 -40.84989 -39.09094 -37.92087 -37.53206 -36.34961 -34.89479 -33.30864 -32.31958 -30.71945 -30.19160 -28.46613 -26.35977 -24.50168 -23.64017 -22.15393 -21.85059 -21.41548 -21.00283 -20.06293 -19.09089 -17.70791 -17.44187 -16.69213 -16.62838 -16.11320 -15.98958 -15.57148 -15.42837 -15.15774 -15.07415 -14.94539 -14.61480 -14.44627 -14.43869 -13.49407 -13.18652 -13.01865 -12.99069 -12.88796 -12.77799 -12.51958 -12.47699 -12.14124 -12.00709 -11.96618 -11.88523 -11.65250 -11.60299 -11.43031 -11.32189 -10.95031 -10.28491 -10.15396 -9.41095 -9.00672 -7.97217 -5.25050 0.00318 0.30827 1.00418 1.03838 1.46307 1.46979 1.56753 1.85431 2.10485 2.18820 2.54238 3.36166 3.41331 3.61246 3.66071 3.72237 3.88877 4.13403 4.20477 4.40354 4.44669 4.46412 4.53410 4.58154 4.64111 4.72539 4.96696 4.99098 5.01315 5.06595 5.16033 5.21225 5.24699 5.33380 5.46456 5.50046 5.53791 5.84148 6.25733 6.35497 6.97944 7.33041 8.07680 8.32689 9.26056 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.002491 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.685083 B =11236.114731 C =12551.740912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.069 0.931 9 N -0.739 5.739 10 C 0.161 3.839 11 C -0.090 4.090 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.112 4.112 15 C -0.124 4.124 16 C 0.154 3.846 17 H 0.078 0.922 18 N -0.706 5.706 19 C 0.593 3.407 20 O -0.555 6.555 21 C -0.022 4.022 22 C -0.092 4.092 23 C -0.111 4.111 24 Cl -0.025 7.025 25 C 0.105 3.895 26 Cl 0.018 6.982 27 N -0.507 5.507 28 H 0.441 0.559 29 H 0.252 0.748 30 H 0.377 0.623 31 H 0.011 0.989 32 H 0.016 0.984 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.408 0.592 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 -22.486 10.367 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.382 5.382 10 C 0.034 3.966 11 C -0.110 4.110 12 H 0.105 0.895 13 C -0.150 4.150 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.049 3.951 17 H 0.096 0.904 18 N -0.357 5.357 19 C 0.380 3.620 20 O -0.433 6.433 21 C -0.136 4.136 22 C -0.118 4.118 23 C -0.146 4.146 24 Cl 0.004 6.996 25 C -0.041 4.041 26 Cl 0.046 6.954 27 N -0.109 5.109 28 H 0.283 0.717 29 H 0.061 0.939 30 H 0.209 0.791 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.244 0.756 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.703 -22.607 9.978 24.721 hybrid contribution -0.542 1.636 0.528 1.803 sum 0.161 -20.971 10.506 23.456 Atomic orbital electron populations 1.69796 1.06369 1.26001 1.59433 1.25481 0.96396 1.00800 1.03658 0.85145 0.78170 0.80105 0.76777 1.19447 1.21929 1.21899 1.19607 0.91318 0.85534 1.41245 0.91255 1.42467 1.05630 1.00782 1.89289 1.20791 0.93655 0.85007 0.97109 1.22279 0.96986 0.92083 0.99617 0.89540 1.22414 0.99659 0.97308 0.95584 1.22323 0.97781 0.93221 1.01648 1.22485 0.97454 0.97527 0.98763 1.21591 1.00436 0.92643 0.80380 0.90416 1.45959 1.30044 1.46394 1.13300 1.16934 0.81470 0.78760 0.84790 1.90869 1.37664 1.58287 1.56512 1.20178 0.96381 1.07215 0.89800 1.21278 1.00414 0.98847 0.91304 1.19679 0.97962 1.04357 0.92592 1.98354 1.78785 1.67750 1.54730 1.20679 0.97016 1.01783 0.84613 1.98448 1.74754 1.97063 1.25115 1.41832 1.24927 1.37415 1.06775 0.71675 0.93942 0.79067 0.97066 0.96651 0.92123 0.92050 0.90319 0.90431 0.90989 0.90530 0.75609 0.81283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.49 13.06 21.65 0.28 -57.21 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.97 45.67 29.55 68.60 2.03 47.69 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.25 -13.53 9.99 84.03 0.84 -12.69 16 8 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -36.08 5.49 -343.46 -1.89 -37.97 16 10 C 0.16 6.18 5.54 86.38 0.48 6.66 16 11 C -0.09 -2.52 2.58 -9.72 -0.03 -2.55 16 12 H 0.09 2.29 7.73 -2.39 -0.02 2.28 16 13 C -0.11 -2.98 6.19 31.88 0.20 -2.78 16 14 C -0.11 -2.18 6.83 31.67 0.22 -1.96 16 15 C -0.12 -2.48 6.59 31.32 0.21 -2.28 16 16 C 0.15 3.69 2.80 45.72 0.13 3.82 16 17 H 0.08 2.22 7.30 -2.39 -0.02 2.21 16 18 N -0.71 -14.22 4.99 -443.16 -2.21 -16.43 16 19 C 0.59 13.86 7.77 86.41 0.67 14.53 16 20 O -0.56 -17.02 16.56 -4.39 -0.07 -17.09 16 21 C -0.02 -0.42 7.06 40.31 0.28 -0.13 16 22 C -0.09 -1.81 10.64 22.58 0.24 -1.57 16 23 C -0.11 -2.04 6.66 22.06 0.15 -1.89 16 24 Cl -0.02 -0.43 29.12 -2.72 -0.08 -0.51 16 25 C 0.10 1.70 7.75 83.52 0.65 2.35 16 26 Cl 0.02 0.25 29.13 -2.72 -0.08 0.17 16 27 N -0.51 -7.30 6.01 -174.51 -1.05 -8.35 16 28 H 0.44 3.95 8.19 -92.71 -0.76 3.19 16 29 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 30 H 0.38 19.22 7.64 -92.70 -0.71 18.51 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.02 0.62 8.02 -2.39 -0.02 0.60 16 33 H 0.06 1.76 7.96 -2.39 -0.02 1.74 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.40 7.92 -2.39 -0.02 1.38 16 39 H 0.41 6.03 7.47 -92.71 -0.69 5.33 16 40 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -67.30 368.25 0.39 -66.92 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: -1.05 Total: 24.80 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 4.50 Total: -2.02 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -4.86 Total: -119.96 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.07 Total: -17.09 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -0.16 Total: -0.34 kcal Total: -67.30 0.39 -66.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272291581.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.934 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds