Wall clock time and date at job start Wed Apr 1 2020 04:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.28643 * 2 1 4 4 C 1.54000 * 110.33332 * 122.13900 * 2 1 3 5 5 N 1.47475 * 107.24991 * 120.10244 * 4 2 1 6 6 C 1.34775 * 127.03388 * 154.61335 * 5 4 2 7 7 O 1.21724 * 120.00211 * 177.98635 * 6 5 4 8 8 C 1.46542 * 120.00183 * 357.97944 * 6 5 4 9 9 C 1.37961 * 126.22479 * 187.94712 * 8 6 5 10 10 C 1.39795 * 107.12720 * 180.02562 * 9 8 6 11 11 Cl 1.73600 * 126.05779 * 179.97438 * 10 9 8 12 12 C 1.35722 * 107.87480 * 0.02562 * 10 9 8 13 13 Cl 1.73594 * 125.58024 * 180.02562 * 12 10 9 14 14 N 1.35658 * 108.82984 * 359.72811 * 12 10 9 15 15 H 0.97001 * 125.69495 * 180.26246 * 14 12 10 16 16 C 1.48384 * 105.79832 * 334.78769 * 5 4 2 17 17 C 1.54615 * 110.33033 * 237.76280 * 2 1 3 18 18 H 1.09002 * 110.74311 * 144.61535 * 17 2 1 19 19 C 1.53009 * 110.73894 * 21.47037 * 17 2 1 20 20 N 1.46496 * 109.47040 * 175.00257 * 19 17 2 21 21 C 1.36936 * 119.99747 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00015 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00261 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99875 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00200 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47222 * 60.00030 * 25 23 21 27 27 H 1.48506 * 109.47094 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47020 * 299.99663 * 25 23 21 29 29 H 1.08996 * 109.47236 * 299.30928 * 1 2 3 30 30 H 1.08997 * 109.47476 * 59.31958 * 1 2 3 31 31 H 1.09002 * 109.46732 * 179.31963 * 1 2 3 32 32 H 1.09005 * 109.91067 * 239.56634 * 4 2 1 33 33 H 1.09006 * 109.90854 * 0.64433 * 4 2 1 34 34 H 1.07997 * 126.43496 * 359.97438 * 9 8 6 35 35 H 1.09008 * 110.51229 * 280.62579 * 16 5 4 36 36 H 1.08995 * 110.69797 * 157.59288 * 16 5 4 37 37 H 1.08999 * 109.46911 * 295.00578 * 19 17 2 38 38 H 1.09000 * 109.46663 * 54.99711 * 19 17 2 39 39 H 0.96996 * 120.00215 * 359.97438 * 20 19 17 40 40 H 0.97000 * 119.99958 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0651 -0.7682 1.2228 5 7 2.8794 -1.8875 0.7140 6 6 3.8888 -2.5126 1.3518 7 8 4.4540 -3.4520 0.8229 8 6 4.3061 -2.0612 2.6821 9 6 5.4110 -2.4996 3.3823 10 6 5.4282 -1.8098 4.5981 11 17 6.6112 -1.9860 5.8563 12 6 4.3554 -0.9787 4.6208 13 17 3.9354 0.0933 5.9199 14 7 3.6687 -1.1184 3.4591 15 1 2.8623 -0.6368 3.2169 16 6 2.3606 -2.1794 -0.6452 17 6 2.0671 -0.7734 -1.2263 18 1 2.9806 -0.3132 -1.6032 19 6 1.0067 -0.8482 -2.3268 20 7 1.5818 -1.4796 -3.5170 21 6 0.8141 -1.6560 -4.6371 22 1 -0.2156 -1.3299 -4.6429 23 6 1.3587 -2.2548 -5.7648 24 7 2.6133 -2.6526 -5.7576 25 14 0.3116 -2.4947 -7.2930 26 1 -0.1616 -1.1744 -7.7810 27 1 1.1215 -3.1524 -8.3497 28 1 -0.8577 -3.3486 -6.9628 29 1 -0.3633 0.5030 0.8961 30 1 -0.3634 0.5243 -0.8838 31 1 -0.3633 -1.0276 -0.0122 32 1 2.6809 -0.1091 1.8349 33 1 1.2331 -1.1526 1.8129 34 1 6.1275 -3.2376 3.0534 35 1 1.4461 -2.7698 -0.5864 36 1 3.1135 -2.6932 -1.2428 37 1 0.1599 -1.4379 -1.9758 38 1 0.6702 0.1582 -2.5760 39 1 2.5064 -1.7728 -3.5117 40 1 2.9939 -3.0714 -6.5454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325544860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:19 Heat of formation + Delta-G solvation = 23.357151 kcal Electronic energy + Delta-G solvation = -25245.354394 eV Core-core repulsion = 21341.442060 eV Total energy + Delta-G solvation = -3903.912333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.00173 -39.95014 -38.09129 -37.25447 -36.80745 -34.84689 -33.14410 -31.71113 -31.24193 -30.02330 -28.77608 -26.88836 -25.54118 -23.86243 -22.47993 -21.77180 -21.36377 -20.74888 -19.23568 -18.27609 -17.13360 -16.84824 -16.19488 -15.78482 -15.52401 -15.18973 -14.86299 -14.65568 -14.24985 -13.91191 -13.75408 -13.62783 -13.48049 -13.03026 -12.58236 -12.49244 -12.38148 -12.31937 -12.16066 -12.00752 -11.86868 -11.82506 -11.24734 -11.07177 -10.87460 -10.66804 -10.55041 -10.39499 -10.27835 -10.05524 -9.72140 -9.44437 -8.96943 -8.88879 -8.61814 -6.96659 -5.78657 -3.08624 0.83077 1.01082 1.73376 1.82643 2.54779 2.90952 3.02584 3.42325 3.46690 3.48253 4.09032 4.24464 4.40593 4.53668 4.56595 4.68077 4.86633 5.02299 5.14838 5.23240 5.25636 5.37838 5.55089 5.59374 5.63915 5.73068 5.82498 5.91963 5.97367 6.00962 6.06097 6.14449 6.26291 6.34937 6.48303 6.61797 6.73825 7.28648 7.66042 7.88583 8.39360 9.50542 10.06894 10.40798 11.43779 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.002243 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.200223 B =12478.002042 C =13524.880588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.086 0.914 4 C 0.091 3.909 5 N -0.620 5.620 6 C 0.605 3.395 7 O -0.512 6.512 8 C -0.007 4.007 9 C -0.088 4.088 10 C -0.097 4.097 11 Cl -0.029 7.029 12 C 0.092 3.908 13 Cl 0.003 6.997 14 N -0.526 5.526 15 H 0.428 0.572 16 C 0.118 3.882 17 C -0.103 4.103 18 H 0.085 0.915 19 C 0.165 3.835 20 N -0.733 5.733 21 C -0.244 4.244 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.169 0.831 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.026 0.974 38 H 0.025 0.975 39 H 0.384 0.616 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 6.970 25.875 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.033 4.033 5 N -0.354 5.354 6 C 0.393 3.607 7 O -0.387 6.387 8 C -0.121 4.121 9 C -0.115 4.115 10 C -0.132 4.132 11 Cl 0.000 7.000 12 C -0.052 4.052 13 Cl 0.031 6.969 14 N -0.133 5.133 15 H 0.275 0.725 16 C -0.003 4.003 17 C -0.123 4.123 18 H 0.104 0.896 19 C 0.038 3.962 20 N -0.378 5.378 21 C -0.375 4.375 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.187 0.813 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.218 0.782 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.582 6.545 25.651 26.520 hybrid contribution -0.599 0.270 -0.601 0.890 sum 0.983 6.815 25.050 25.979 Atomic orbital electron populations 1.21927 0.93561 1.02726 1.02220 1.22015 0.96947 0.99303 0.93245 0.89582 1.22504 0.94409 0.88459 0.97914 1.48838 1.33023 1.34442 1.19049 1.16377 0.79159 0.82478 0.82671 1.90934 1.54410 1.27331 1.66052 1.20485 0.98403 0.98518 0.94662 1.21167 0.97778 1.01271 0.91242 1.19626 0.95183 1.03969 0.94424 1.98353 1.54964 1.97046 1.49632 1.20636 0.96411 1.00970 0.87229 1.98426 1.93181 1.62206 1.43084 1.42773 1.24419 1.33205 1.12921 0.72525 1.22702 0.99916 0.97490 0.80153 1.22543 1.00672 0.94350 0.94726 0.89648 1.20703 0.93170 0.96254 0.86121 1.42385 1.13166 1.72069 1.10174 1.19134 0.94476 1.33080 0.90810 0.91240 1.24756 0.96291 1.01427 0.98327 1.69647 1.12512 1.46074 1.29654 0.86274 0.79227 0.77728 0.82952 1.21280 1.21664 1.21251 0.92930 0.90940 0.91911 0.91878 0.90705 0.81315 0.90238 0.88735 0.95656 0.95775 0.78235 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 7.78 37.16 0.29 -1.05 16 2 C -0.10 -0.95 3.53 -89.25 -0.31 -1.26 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.09 0.80 5.27 -2.99 -0.02 0.79 16 5 N -0.62 -7.85 3.30 -171.13 -0.57 -8.42 16 6 C 0.61 8.56 7.85 -12.91 -0.10 8.46 16 7 O -0.51 -9.23 17.13 5.17 0.09 -9.14 16 8 C -0.01 -0.08 6.87 -81.94 -0.56 -0.64 16 9 C -0.09 -0.97 10.65 -39.10 -0.42 -1.39 16 10 C -0.10 -0.98 6.66 -39.90 -0.27 -1.25 16 11 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 12 C 0.09 0.83 7.75 -16.76 -0.13 0.70 16 13 Cl 0.00 0.02 29.13 -51.86 -1.51 -1.49 16 14 N -0.53 -4.59 5.44 -6.51 -0.04 -4.63 16 15 H 0.43 2.80 5.29 -40.82 -0.22 2.58 16 16 C 0.12 1.77 6.46 -1.98 -0.01 1.76 16 17 C -0.10 -1.47 3.00 -88.74 -0.27 -1.74 16 18 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 19 C 0.17 2.96 4.44 -4.04 -0.02 2.95 16 20 N -0.73 -17.69 5.52 -59.91 -0.33 -18.02 16 21 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 22 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.74 6.76 -51.93 -0.35 0.39 16 31 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 32 H 0.06 0.44 5.46 -51.93 -0.28 0.16 16 33 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 34 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.08 1.19 7.95 -51.92 -0.41 0.78 16 36 H 0.09 1.69 7.88 -51.93 -0.41 1.28 16 37 H 0.03 0.45 6.81 -51.93 -0.35 0.10 16 38 H 0.02 0.44 7.37 -51.93 -0.38 0.06 16 39 H 0.38 9.90 7.67 -40.82 -0.31 9.59 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 358.36 15.07 5.40 5.40 Total: -1.00 -31.79 358.36 -9.57 -41.36 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.75 Total: 6.72 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.06 Total: 0.12 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.21 Total: -58.29 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -3.02 Total: -3.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.79 -9.57 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325544860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.715 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds