Wall clock time and date at job start Wed Apr 1 2020 04:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.28643 * 2 1 4 4 C 1.54000 * 110.33332 * 122.13900 * 2 1 3 5 5 N 1.47475 * 107.24991 * 120.10244 * 4 2 1 6 6 C 1.34775 * 127.03388 * 154.61335 * 5 4 2 7 7 O 1.21724 * 120.00211 * 177.98635 * 6 5 4 8 8 C 1.46542 * 120.00183 * 357.97944 * 6 5 4 9 9 C 1.37961 * 126.22479 * 187.94712 * 8 6 5 10 10 C 1.39795 * 107.12720 * 180.02562 * 9 8 6 11 11 Cl 1.73600 * 126.05779 * 179.97438 * 10 9 8 12 12 C 1.35722 * 107.87480 * 0.02562 * 10 9 8 13 13 Cl 1.73594 * 125.58024 * 180.02562 * 12 10 9 14 14 N 1.35658 * 108.82984 * 359.72811 * 12 10 9 15 15 H 0.97001 * 125.69495 * 180.26246 * 14 12 10 16 16 C 1.48384 * 105.79832 * 334.78769 * 5 4 2 17 17 C 1.54615 * 110.33033 * 237.76280 * 2 1 3 18 18 H 1.09002 * 110.74311 * 144.61535 * 17 2 1 19 19 C 1.53009 * 110.73894 * 21.47037 * 17 2 1 20 20 N 1.46496 * 109.47040 * 175.00257 * 19 17 2 21 21 C 1.36936 * 119.99747 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00015 * 359.97438 * 21 20 19 23 23 C 1.38809 * 120.00261 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99875 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00200 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47222 * 60.00030 * 25 23 21 27 27 H 1.48506 * 109.47094 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47020 * 299.99663 * 25 23 21 29 29 H 1.08996 * 109.47236 * 299.30928 * 1 2 3 30 30 H 1.08997 * 109.47476 * 59.31958 * 1 2 3 31 31 H 1.09002 * 109.46732 * 179.31963 * 1 2 3 32 32 H 1.09005 * 109.91067 * 239.56634 * 4 2 1 33 33 H 1.09006 * 109.90854 * 0.64433 * 4 2 1 34 34 H 1.07997 * 126.43496 * 359.97438 * 9 8 6 35 35 H 1.09008 * 110.51229 * 280.62579 * 16 5 4 36 36 H 1.08995 * 110.69797 * 157.59288 * 16 5 4 37 37 H 1.08999 * 109.46911 * 295.00578 * 19 17 2 38 38 H 1.09000 * 109.46663 * 54.99711 * 19 17 2 39 39 H 0.96996 * 120.00215 * 359.97438 * 20 19 17 40 40 H 0.97000 * 119.99958 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0651 -0.7682 1.2228 5 7 2.8794 -1.8875 0.7140 6 6 3.8888 -2.5126 1.3518 7 8 4.4540 -3.4520 0.8229 8 6 4.3061 -2.0612 2.6821 9 6 5.4110 -2.4996 3.3823 10 6 5.4282 -1.8098 4.5981 11 17 6.6112 -1.9860 5.8563 12 6 4.3554 -0.9787 4.6208 13 17 3.9354 0.0933 5.9199 14 7 3.6687 -1.1184 3.4591 15 1 2.8623 -0.6368 3.2169 16 6 2.3606 -2.1794 -0.6452 17 6 2.0671 -0.7734 -1.2263 18 1 2.9806 -0.3132 -1.6032 19 6 1.0067 -0.8482 -2.3268 20 7 1.5818 -1.4796 -3.5170 21 6 0.8141 -1.6560 -4.6371 22 1 -0.2156 -1.3299 -4.6429 23 6 1.3587 -2.2548 -5.7648 24 7 2.6133 -2.6526 -5.7576 25 14 0.3116 -2.4947 -7.2930 26 1 -0.1616 -1.1744 -7.7810 27 1 1.1215 -3.1524 -8.3497 28 1 -0.8577 -3.3486 -6.9628 29 1 -0.3633 0.5030 0.8961 30 1 -0.3634 0.5243 -0.8838 31 1 -0.3633 -1.0276 -0.0122 32 1 2.6809 -0.1091 1.8349 33 1 1.2331 -1.1526 1.8129 34 1 6.1275 -3.2376 3.0534 35 1 1.4461 -2.7698 -0.5864 36 1 3.1135 -2.6932 -1.2428 37 1 0.1599 -1.4379 -1.9758 38 1 0.6702 0.1582 -2.5760 39 1 2.5064 -1.7728 -3.5117 40 1 2.9939 -3.0714 -6.5454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325544860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:19 Heat of formation + Delta-G solvation = 3.106329 kcal Electronic energy + Delta-G solvation = -25246.232535 eV Core-core repulsion = 21341.442060 eV Total energy + Delta-G solvation = -3904.790475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.84040 -40.97572 -39.23253 -37.94297 -37.55160 -36.50427 -34.48992 -32.89321 -32.49657 -31.11410 -30.00706 -27.78089 -26.99367 -25.26525 -23.90963 -22.78531 -22.21158 -21.59531 -20.40577 -19.46500 -18.68462 -17.96819 -17.27613 -16.81963 -16.70726 -16.29707 -15.92757 -15.83486 -15.29080 -15.25709 -15.05498 -14.73534 -14.51216 -14.37068 -13.87479 -13.56667 -13.53153 -13.14316 -13.02942 -12.95070 -12.89570 -12.76660 -12.72075 -12.51114 -12.22460 -12.01131 -11.85445 -11.70997 -11.58751 -11.43767 -11.36470 -10.88719 -10.27030 -9.98566 -9.42604 -8.97959 -7.93557 -5.22605 -0.04337 0.26965 0.98846 1.00188 1.47674 1.50677 1.56180 1.56864 1.99684 2.12517 2.56930 3.18990 3.37860 3.40100 3.53251 3.71186 3.78142 3.98103 4.12138 4.16270 4.26427 4.34043 4.41137 4.50740 4.54449 4.73756 4.75340 4.80948 4.94854 4.97863 5.04587 5.16424 5.22151 5.22914 5.37337 5.51476 5.52026 5.79238 6.26795 6.28196 6.80399 7.34210 8.11356 8.31867 9.29911 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.022681 B = 0.002243 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.200223 B =12478.002042 C =13524.880588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.107 0.893 4 C 0.088 3.912 5 N -0.617 5.617 6 C 0.602 3.398 7 O -0.565 6.565 8 C -0.019 4.019 9 C -0.091 4.091 10 C -0.110 4.110 11 Cl -0.023 7.023 12 C 0.107 3.893 13 Cl 0.025 6.975 14 N -0.510 5.510 15 H 0.439 0.561 16 C 0.122 3.878 17 C -0.097 4.097 18 H 0.068 0.932 19 C 0.166 3.834 20 N -0.749 5.749 21 C -0.242 4.242 22 H 0.080 0.920 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.973 3.027 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.277 1.277 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.166 0.834 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.033 0.967 39 H 0.371 0.629 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 9.069 28.294 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.125 0.875 4 C -0.034 4.034 5 N -0.349 5.349 6 C 0.393 3.607 7 O -0.444 6.444 8 C -0.132 4.132 9 C -0.118 4.118 10 C -0.144 4.144 11 Cl 0.006 6.994 12 C -0.039 4.039 13 Cl 0.053 6.947 14 N -0.118 5.118 15 H 0.288 0.712 16 C -0.001 4.001 17 C -0.117 4.117 18 H 0.087 0.913 19 C 0.040 3.960 20 N -0.392 5.392 21 C -0.374 4.374 22 H 0.098 0.902 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.802 3.198 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.203 1.203 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.183 0.817 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.202 0.798 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.353 8.713 28.117 29.438 hybrid contribution -0.045 -0.310 -1.209 1.249 sum -0.398 8.402 26.908 28.192 Atomic orbital electron populations 1.21931 0.92450 1.02522 1.03448 1.22012 0.97737 0.99706 0.90856 0.87478 1.22798 0.95180 0.87528 0.97914 1.48824 1.32929 1.35151 1.18025 1.16715 0.78752 0.81870 0.83407 1.90901 1.56213 1.29757 1.67555 1.19920 0.99279 1.00160 0.93879 1.21267 0.97662 1.01164 0.91717 1.19660 0.95960 1.04433 0.94389 1.98354 1.54816 1.97067 1.49156 1.20721 0.95602 1.00234 0.87341 1.98445 1.92950 1.61318 1.41954 1.42615 1.24470 1.32395 1.12320 0.71154 1.22451 0.98590 0.97702 0.81311 1.22362 0.99148 0.94604 0.95545 0.91316 1.20877 0.94205 0.95842 0.85065 1.42666 1.12557 1.72455 1.11507 1.19605 0.95002 1.31227 0.91551 0.90207 1.25597 0.97504 1.02384 1.01613 1.69826 1.14408 1.47952 1.30089 0.85219 0.77601 0.77900 0.79087 1.20168 1.22584 1.20314 0.89524 0.92021 0.92767 0.89252 0.87826 0.81656 0.90307 0.92864 0.94781 0.94941 0.79815 0.94147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 7.78 71.98 0.56 -1.59 16 2 C -0.08 -1.42 3.53 -9.91 -0.03 -1.45 16 3 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 4 C 0.09 1.27 5.27 86.53 0.46 1.73 16 5 N -0.62 -15.31 3.30 -813.54 -2.69 -17.99 16 6 C 0.60 17.28 7.85 86.41 0.68 17.96 16 7 O -0.57 -21.59 17.13 -4.42 -0.08 -21.67 16 8 C -0.02 -0.40 6.87 40.31 0.28 -0.13 16 9 C -0.09 -1.97 10.65 22.58 0.24 -1.73 16 10 C -0.11 -2.04 6.66 22.06 0.15 -1.89 16 11 Cl -0.02 -0.38 29.12 -2.72 -0.08 -0.46 16 12 C 0.11 1.65 7.75 83.52 0.65 2.30 16 13 Cl 0.02 0.29 29.13 -2.72 -0.08 0.21 16 14 N -0.51 -7.50 5.44 -174.52 -0.95 -8.45 16 15 H 0.44 4.02 5.29 -92.71 -0.49 3.53 16 16 C 0.12 3.76 6.46 86.68 0.56 4.32 16 17 C -0.10 -2.73 3.00 -9.58 -0.03 -2.76 16 18 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 19 C 0.17 5.90 4.44 86.38 0.38 6.28 16 20 N -0.75 -36.94 5.52 -343.45 -1.90 -38.84 16 21 C -0.24 -13.23 9.99 84.03 0.84 -12.39 16 22 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 23 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 24 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 25 Si 0.97 46.00 29.55 68.60 2.03 48.02 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 28 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.07 6.76 -2.39 -0.02 1.05 16 31 H 0.05 0.91 7.51 -2.39 -0.02 0.89 16 32 H 0.09 0.86 5.46 -2.38 -0.01 0.85 16 33 H 0.10 1.01 7.68 -2.38 -0.02 0.99 16 34 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.08 2.42 7.95 -2.38 -0.02 2.40 16 36 H 0.05 2.08 7.88 -2.39 -0.02 2.06 16 37 H 0.03 1.18 6.81 -2.39 -0.02 1.16 16 38 H 0.03 1.13 7.37 -2.39 -0.02 1.11 16 39 H 0.37 20.03 7.67 -92.71 -0.71 19.32 16 40 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -71.93 358.36 1.64 -70.29 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -0.09 Total: 22.39 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.19 Total: 6.58 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -5.25 Total: -125.36 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.08 Total: -21.67 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.16 Total: -0.25 kcal Total: -71.93 1.64 -70.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325544860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.395 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds