Wall clock time and date at job start Wed Apr 1 2020 04:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.64138 * 2 1 4 4 C 1.54322 * 110.71656 * 123.14430 * 2 1 3 5 5 N 1.47019 * 107.27223 * 140.55781 * 4 2 1 6 6 C 1.34777 * 125.65061 * 181.07843 * 5 4 2 7 7 O 1.21720 * 120.00241 * 179.97438 * 6 5 4 8 8 C 1.46538 * 119.99851 * 359.97120 * 6 5 4 9 9 C 1.37969 * 126.22217 * 179.68883 * 8 6 5 10 10 C 1.39793 * 107.12772 * 179.84788 * 9 8 6 11 11 Cl 1.73592 * 126.06148 * 180.15819 * 10 9 8 12 12 C 1.35730 * 107.87372 * 0.42101 * 10 9 8 13 13 Cl 1.73599 * 125.57998 * 179.71742 * 12 10 9 14 14 N 1.35661 * 108.83370 * 359.73746 * 12 10 9 15 15 H 0.96997 * 125.69646 * 179.97438 * 14 12 10 16 16 C 1.47426 * 108.70209 * 1.05519 * 5 4 2 17 17 C 1.54910 * 104.83209 * 335.87354 * 16 5 4 18 18 H 1.08999 * 111.00452 * 278.93764 * 17 16 5 19 19 C 1.52999 * 111.00558 * 155.08511 * 17 16 5 20 20 N 1.46505 * 109.47057 * 66.45094 * 19 17 16 21 21 C 1.36935 * 119.99667 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00527 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00035 * 180.02562 * 21 20 19 24 24 N 1.31623 * 119.99582 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00248 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47383 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47127 * 119.99599 * 25 23 21 28 28 H 1.48503 * 109.47042 * 239.99655 * 25 23 21 29 29 H 1.08997 * 109.47290 * 298.31647 * 1 2 3 30 30 H 1.09000 * 109.46958 * 58.30968 * 1 2 3 31 31 H 1.09000 * 109.47467 * 178.30753 * 1 2 3 32 32 H 1.09001 * 109.88768 * 21.13523 * 4 2 1 33 33 H 1.09004 * 110.00812 * 260.03858 * 4 2 1 34 34 H 1.07993 * 126.43532 * 359.96840 * 9 8 6 35 35 H 1.08998 * 110.36718 * 94.71247 * 16 5 4 36 36 H 1.09005 * 110.36600 * 217.03808 * 16 5 4 37 37 H 1.08993 * 109.47274 * 186.45341 * 19 17 16 38 38 H 1.09005 * 109.47002 * 306.45585 * 19 17 16 39 39 H 0.96994 * 120.00157 * 0.02562 * 20 19 17 40 40 H 0.97001 * 119.99867 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0759 -0.7892 1.2086 5 7 3.2444 -1.5495 0.7417 6 6 3.9915 -2.3820 1.4936 7 8 4.9405 -2.9621 0.9992 8 6 3.6614 -2.5885 2.9062 9 6 4.3313 -3.4113 3.7882 10 6 3.6851 -3.3040 5.0231 11 17 4.1279 -4.1315 6.4835 12 6 2.6464 -2.4426 4.8764 13 17 1.5320 -1.9821 6.1252 14 7 2.6216 -2.0010 3.5940 15 1 1.9791 -1.3763 3.2228 16 6 3.4632 -1.2510 -0.6854 17 6 2.0789 -0.7975 -1.2124 18 1 1.4451 -1.6560 -1.4346 19 6 2.2277 0.1038 -2.4397 20 7 2.7775 -0.6739 -3.5530 21 6 2.9999 -0.0736 -4.7635 22 1 2.7697 0.9730 -4.8977 23 6 3.5202 -0.8106 -5.8185 24 7 3.8003 -2.0862 -5.6551 25 14 3.8230 0.0080 -7.4700 26 1 3.4276 1.4375 -7.3939 27 1 5.2643 -0.0897 -7.8141 28 1 3.0172 -0.6730 -8.5151 29 1 -0.3634 0.4874 0.9047 30 1 -0.3633 0.5399 -0.8744 31 1 -0.3634 -1.0272 -0.0304 32 1 1.3128 -1.4732 1.5801 33 1 2.3736 -0.1010 1.9998 34 1 5.1941 -4.0218 3.5666 35 1 4.1931 -0.4493 -0.7976 36 1 3.7959 -2.1448 -1.2132 37 1 1.2518 0.4998 -2.7202 38 1 2.9009 0.9285 -2.2054 39 1 2.9839 -1.6140 -3.4326 40 1 4.1643 -2.6012 -6.3922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325544861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:22 Heat of formation + Delta-G solvation = -5.289638 kcal Electronic energy + Delta-G solvation = -25189.194105 eV Core-core repulsion = 21284.039553 eV Total energy + Delta-G solvation = -3905.154551 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.83933 -40.95516 -39.15093 -37.94190 -37.55014 -36.53098 -34.43347 -33.12112 -32.48275 -31.21640 -30.03673 -27.60383 -27.18663 -25.20808 -23.69417 -22.28633 -22.10049 -21.59640 -21.23310 -19.45732 -18.91030 -17.72808 -17.54177 -16.83260 -16.66682 -16.15857 -15.78215 -15.58526 -15.46580 -15.18457 -15.01066 -14.84584 -14.50465 -14.30610 -14.20164 -13.59964 -13.49524 -13.36422 -13.02386 -12.97366 -12.90842 -12.81123 -12.51155 -12.47442 -12.11394 -12.00899 -11.96326 -11.88724 -11.66309 -11.44596 -11.38702 -10.95351 -10.26664 -9.94534 -9.42328 -8.99987 -7.94927 -5.24008 -0.04866 0.27031 0.99398 0.99932 1.47396 1.48251 1.58139 1.58422 2.00725 2.13172 2.55767 3.18068 3.34266 3.39417 3.51205 3.69140 3.74045 4.03613 4.09126 4.17036 4.22077 4.37305 4.41257 4.47091 4.52318 4.69831 4.79188 4.82820 4.88793 5.00655 5.03621 5.12858 5.20195 5.24060 5.33656 5.47523 5.51188 5.79986 6.23250 6.26984 6.80459 7.33293 8.09413 8.30315 9.28833 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.021855 B = 0.002256 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.889505 B =12409.470336 C =13522.651920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.081 4.081 3 H 0.104 0.896 4 C 0.083 3.917 5 N -0.613 5.613 6 C 0.598 3.402 7 O -0.565 6.565 8 C -0.019 4.019 9 C -0.090 4.090 10 C -0.110 4.110 11 Cl -0.022 7.022 12 C 0.108 3.892 13 Cl 0.025 6.975 14 N -0.510 5.510 15 H 0.439 0.561 16 C 0.121 3.879 17 C -0.092 4.092 18 H 0.079 0.921 19 C 0.165 3.835 20 N -0.748 5.748 21 C -0.240 4.240 22 H 0.080 0.920 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.972 3.028 26 H -0.263 1.263 27 H -0.297 1.297 28 H -0.294 1.294 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.166 0.834 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.027 0.973 39 H 0.372 0.628 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 3.399 28.318 29.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 H 0.122 0.878 4 C -0.038 4.038 5 N -0.345 5.345 6 C 0.388 3.612 7 O -0.444 6.444 8 C -0.133 4.133 9 C -0.117 4.117 10 C -0.145 4.145 11 Cl 0.006 6.994 12 C -0.038 4.038 13 Cl 0.054 6.946 14 N -0.117 5.117 15 H 0.287 0.713 16 C -0.001 4.001 17 C -0.111 4.111 18 H 0.097 0.903 19 C 0.039 3.961 20 N -0.391 5.391 21 C -0.372 4.372 22 H 0.098 0.902 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.187 1.187 27 H -0.224 1.224 28 H -0.221 1.221 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.184 0.816 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.204 0.796 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.414 3.325 28.117 29.536 hybrid contribution 0.323 -0.154 -1.245 1.296 sum -8.092 3.171 26.871 28.242 Atomic orbital electron populations 1.21789 0.91580 1.02731 1.03664 1.22194 0.97924 0.99444 0.90498 0.87768 1.22687 0.86980 0.95285 0.98894 1.48452 1.30519 1.43981 1.11523 1.16774 0.81861 0.78615 0.83946 1.90899 1.30339 1.50193 1.72944 1.19915 0.95628 1.05645 0.92143 1.21268 1.01136 0.99870 0.89447 1.19657 0.99875 1.04186 0.90742 1.98354 1.92139 1.76690 1.32181 1.20713 0.97133 1.01757 0.84222 1.98446 1.59036 1.91301 1.45856 1.42485 1.25330 1.36856 1.06986 0.71311 1.22152 0.98402 1.00112 0.79478 1.22508 0.94565 0.99039 0.95006 0.90282 1.20746 0.96526 0.93072 0.85780 1.42623 1.77044 1.10387 1.09000 1.19675 1.33616 0.94733 0.89206 0.90222 1.25595 1.02932 0.96512 1.02060 1.69836 1.51817 1.08121 1.32436 0.85084 0.76728 0.78187 0.79828 1.18676 1.22407 1.22146 0.89380 0.91998 0.92397 0.89120 0.88395 0.81640 0.91574 0.93191 0.94655 0.95541 0.79644 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.13 71.98 0.66 -1.11 16 2 C -0.08 -1.36 3.01 -9.61 -0.03 -1.39 16 3 H 0.10 1.57 8.04 -2.39 -0.02 1.55 16 4 C 0.08 1.23 4.71 86.73 0.41 1.64 16 5 N -0.61 -15.51 3.33 -816.63 -2.72 -18.22 16 6 C 0.60 17.36 7.82 86.41 0.68 18.03 16 7 O -0.56 -21.78 17.14 -4.41 -0.08 -21.86 16 8 C -0.02 -0.43 6.89 40.30 0.28 -0.15 16 9 C -0.09 -1.96 10.64 22.58 0.24 -1.72 16 10 C -0.11 -2.04 6.66 22.06 0.15 -1.90 16 11 Cl -0.02 -0.38 29.12 -2.72 -0.08 -0.46 16 12 C 0.11 1.67 7.75 83.52 0.65 2.32 16 13 Cl 0.03 0.30 29.13 -2.72 -0.08 0.22 16 14 N -0.51 -7.57 5.62 -174.50 -0.98 -8.55 16 15 H 0.44 4.12 4.92 -92.71 -0.46 3.67 16 16 C 0.12 3.85 6.08 86.86 0.53 4.38 16 17 C -0.09 -2.54 2.55 -9.40 -0.02 -2.57 16 18 H 0.08 2.35 8.04 -2.39 -0.02 2.34 16 19 C 0.17 5.90 5.71 86.38 0.49 6.39 16 20 N -0.75 -36.84 5.45 -343.44 -1.87 -38.71 16 21 C -0.24 -13.17 9.99 84.03 0.84 -12.33 16 22 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 24 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 25 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 32 H 0.09 0.97 6.76 -2.39 -0.02 0.96 16 33 H 0.10 0.91 7.22 -2.38 -0.02 0.90 16 34 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 35 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 36 H 0.05 1.97 8.04 -2.38 -0.02 1.96 16 37 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.03 0.94 8.10 -2.38 -0.02 0.92 16 39 H 0.37 19.98 7.53 -92.71 -0.70 19.28 16 40 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -72.03 363.57 1.78 -70.26 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -0.06 Total: 21.59 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 5.33 Total: 7.54 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -5.29 Total: -125.44 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.08 Total: -21.86 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.16 Total: -0.24 kcal Total: -72.03 1.78 -70.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325544861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.968 kcal (2) G-P(sol) polarization free energy of solvation -72.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds