Wall clock time and date at job start Wed Apr 1 2020 04:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 N 1.41595 * 114.00255 * 2 1 4 4 C 1.34774 * 120.00021 * 95.06089 * 3 2 1 5 5 O 1.21579 * 119.99792 * 185.75278 * 4 3 2 6 6 C 1.47686 * 120.00388 * 5.75117 * 4 3 2 7 7 C 1.39662 * 120.16274 * 25.56495 * 6 4 3 8 8 C 1.37859 * 119.87651 * 179.97438 * 7 6 4 9 9 S 1.76204 * 119.88941 * 179.97438 * 8 7 6 10 10 O 1.42099 * 106.40118 * 336.45737 * 9 8 7 11 11 O 1.42101 * 106.39980 * 203.53725 * 9 8 7 12 12 C 1.76199 * 107.21549 * 89.99627 * 9 8 7 13 13 H 1.07995 * 120.00311 * 0.02562 * 12 9 8 14 14 C 1.37882 * 119.99469 * 179.72324 * 12 9 8 15 15 N 1.31516 * 120.00381 * 0.27141 * 14 12 9 16 16 Si 1.86798 * 119.99748 * 180.27616 * 14 12 9 17 17 H 1.48501 * 109.47331 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47128 * 119.99941 * 16 14 12 19 19 H 1.48494 * 109.47036 * 239.99799 * 16 14 12 20 20 C 1.38460 * 120.21651 * 0.25084 * 8 7 6 21 21 C 1.38205 * 120.34275 * 359.48986 * 20 8 7 22 22 C 1.38328 * 120.11169 * 0.51063 * 21 20 8 23 23 F 1.35102 * 120.10563 * 179.72249 * 22 21 20 24 24 C 1.46503 * 120.00005 * 275.05667 * 3 2 1 25 25 C 1.52998 * 109.47334 * 119.99913 * 24 3 2 26 26 C 1.53001 * 109.47253 * 240.00177 * 24 3 2 27 27 H 1.09006 * 109.46764 * 300.00617 * 1 2 3 28 28 H 1.08995 * 109.47188 * 59.99958 * 1 2 3 29 29 H 1.08998 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.06199 * 359.97438 * 7 6 4 31 31 H 0.96995 * 119.99804 * 179.97438 * 15 14 12 32 32 H 1.08000 * 119.82737 * 179.73010 * 20 8 7 33 33 H 1.07995 * 119.94369 * 180.26040 * 21 20 8 34 34 H 1.09009 * 109.47042 * 0.02562 * 24 3 2 35 35 H 1.09002 * 109.46750 * 59.99781 * 25 24 3 36 36 H 1.08993 * 109.47107 * 179.97438 * 25 24 3 37 37 H 1.09002 * 109.47000 * 300.00641 * 25 24 3 38 38 H 1.09001 * 109.46878 * 59.99871 * 26 24 3 39 39 H 1.09002 * 109.47371 * 179.97438 * 26 24 3 40 40 H 1.08995 * 109.47100 * 299.99947 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3731 1.8672 1.1626 5 8 2.7700 3.0164 1.1745 6 6 2.2945 1.1001 2.4222 7 6 2.3681 -0.2944 2.4003 8 6 2.2946 -1.0045 3.5796 9 16 2.3867 -2.7640 3.5523 10 8 1.9807 -3.1669 2.2515 11 8 1.7519 -3.2174 4.7400 12 6 4.0877 -3.1994 3.6998 13 1 4.8375 -2.4269 3.7848 14 6 4.4608 -4.5268 3.7128 15 7 3.5476 -5.4676 3.6099 16 14 6.2633 -4.9887 3.8769 17 1 7.0834 -3.7547 3.9767 18 1 6.4546 -5.8097 5.0995 19 1 6.6847 -5.7688 2.6858 20 6 2.1429 -0.3401 4.7848 21 6 2.0744 1.0399 4.8175 22 6 2.1466 1.7663 3.6425 23 9 2.0741 3.1150 3.6741 24 6 2.2008 2.0082 -1.2638 25 6 1.4153 3.3208 -1.2345 26 6 3.6888 2.3084 -1.4547 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.4824 -0.8155 1.4612 31 1 3.8102 -6.4013 3.6188 32 1 2.0816 -0.9029 5.7045 33 1 1.9602 1.5517 5.7616 34 1 1.8455 1.3909 -2.0891 35 1 1.7701 3.9381 -0.4092 36 1 1.5614 3.8527 -2.1746 37 1 0.3552 3.1069 -1.0984 38 1 4.2484 1.3732 -1.4756 39 1 3.8346 2.8398 -2.3952 40 1 4.0437 2.9258 -0.6295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346432851.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:13 Heat of formation + Delta-G solvation = -126.266935 kcal Electronic energy + Delta-G solvation = -29286.730885 eV Core-core repulsion = 24917.744945 eV Total energy + Delta-G solvation = -4368.985941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.93812 -40.38307 -38.39545 -37.39275 -35.37165 -35.02321 -34.08489 -33.17747 -31.91838 -30.58025 -30.15980 -27.36294 -26.51792 -26.22771 -24.38562 -23.08779 -22.15369 -19.99523 -19.11287 -18.48970 -17.47634 -16.94481 -16.75029 -16.25667 -16.17559 -15.83452 -15.54122 -15.04026 -14.74720 -14.44952 -14.32069 -14.19536 -14.03178 -13.95354 -13.54531 -13.37115 -13.12393 -12.95267 -12.79244 -12.39215 -12.10907 -11.97610 -11.88249 -11.57153 -11.40784 -11.30810 -11.27499 -11.26815 -10.62129 -10.56102 -10.39686 -10.28822 -9.95481 -9.59840 -9.33025 -9.22435 -9.04685 -9.00344 -8.75980 -6.79833 -5.43045 0.67523 1.10522 1.72348 1.98863 2.58486 3.02521 3.11300 3.18972 3.54596 3.76881 4.01831 4.14119 4.55105 4.68270 4.71982 4.78361 4.91850 5.04130 5.13806 5.17714 5.19107 5.23935 5.42106 5.48116 5.52990 5.56766 5.58204 5.70272 5.72498 5.75997 5.80992 6.02659 6.10555 6.14850 6.16257 6.25126 6.37043 6.78497 6.82300 7.22830 7.29663 7.86575 7.92631 8.78904 10.14974 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.004083 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.589206 B = 6856.650938 C = 7437.823663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 O -0.132 6.132 3 N -0.475 5.475 4 C 0.582 3.418 5 O -0.510 6.510 6 C -0.209 4.209 7 C 0.051 3.949 8 C -0.670 4.670 9 S 2.604 3.396 10 O -0.977 6.977 11 O -0.981 6.981 12 C -1.001 5.001 13 H 0.106 0.894 14 C 0.133 3.867 15 N -0.841 5.841 16 Si 0.923 3.077 17 H -0.261 1.261 18 H -0.270 1.270 19 H -0.269 1.269 20 C 0.030 3.970 21 C -0.192 4.192 22 C 0.188 3.812 23 F -0.120 7.120 24 C 0.145 3.855 25 C -0.176 4.176 26 C -0.169 4.169 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.169 0.831 31 H 0.292 0.708 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 12.712 -6.387 14.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 O -0.136 6.136 3 N -0.254 5.254 4 C 0.373 3.627 5 O -0.386 6.386 6 C -0.214 4.214 7 C 0.032 3.968 8 C -0.750 4.750 9 S 2.783 3.217 10 O -0.974 6.974 11 O -0.978 6.978 12 C -1.135 5.135 13 H 0.125 0.875 14 C -0.085 4.085 15 N -0.470 5.470 16 Si 0.746 3.254 17 H -0.184 1.184 18 H -0.194 1.194 19 H -0.194 1.194 20 C 0.011 3.989 21 C -0.212 4.212 22 C 0.167 3.833 23 F -0.098 7.098 24 C 0.045 3.955 25 C -0.234 4.234 26 C -0.227 4.227 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.134 0.866 30 H 0.186 0.814 31 H 0.103 0.897 32 H 0.174 0.826 33 H 0.165 0.835 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.141 12.580 -6.497 14.752 hybrid contribution 1.041 0.502 0.162 1.167 sum -3.100 13.082 -6.335 14.862 Atomic orbital electron populations 1.23463 0.81339 1.04765 1.01068 1.90722 1.20482 1.05899 1.96480 1.50189 1.58457 1.10298 1.06485 1.18064 0.77032 0.85295 0.82340 1.90780 1.46878 1.15985 1.84987 1.19931 1.14302 0.94976 0.92166 1.21517 0.85175 0.91217 0.98906 1.31879 1.14146 1.31063 0.97896 1.01220 0.77487 0.69358 0.73609 1.93353 1.84638 1.78496 1.40899 1.93349 1.78134 1.77206 1.49102 1.30121 1.16247 1.00089 1.66999 0.87549 1.24760 1.00740 0.94494 0.88508 1.69894 1.35167 1.02533 1.39431 0.86083 0.81226 0.79317 0.78746 1.18431 1.19449 1.19427 1.21130 0.86674 0.93160 0.97896 1.21202 1.07918 0.94909 0.97128 1.17827 0.95189 0.76892 0.93373 1.91560 1.92469 1.28560 1.97219 1.21348 0.97135 0.92786 0.84226 1.22369 0.99642 0.97374 1.03997 1.22202 0.94351 1.02970 1.03156 0.92962 0.92778 0.86555 0.81383 0.89726 0.82641 0.83543 0.88573 0.89642 0.91193 0.92821 0.91750 0.91066 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 11.45 101.05 1.16 1.06 16 2 O -0.13 -1.95 7.94 -11.47 -0.09 -2.05 16 3 N -0.48 -6.83 2.90 -54.79 -0.16 -6.98 16 4 C 0.58 9.61 6.90 -12.40 -0.09 9.52 16 5 O -0.51 -8.90 12.00 5.30 0.06 -8.84 16 6 C -0.21 -3.64 5.75 -104.92 -0.60 -4.24 16 7 C 0.05 0.95 8.23 -39.19 -0.32 0.63 16 8 C -0.67 -13.36 5.81 -39.64 -0.23 -13.59 16 9 S 2.60 64.92 4.65 -107.50 -0.50 64.42 16 10 O -0.98 -26.25 17.15 -57.17 -0.98 -27.23 16 11 O -0.98 -26.41 17.14 -57.17 -0.98 -27.39 16 12 C -1.00 -26.17 9.58 30.60 0.29 -25.88 16 13 H 0.11 2.56 7.81 -52.49 -0.41 2.15 16 14 C 0.13 3.53 5.46 -17.82 -0.10 3.44 16 15 N -0.84 -23.42 13.19 55.43 0.73 -22.69 16 16 Si 0.92 19.71 29.54 -169.99 -5.02 14.69 16 17 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 C 0.03 0.52 9.51 -39.51 -0.38 0.14 16 21 C -0.19 -2.87 10.02 -39.56 -0.40 -3.26 16 22 C 0.19 3.08 7.25 -38.96 -0.28 2.80 16 23 F -0.12 -1.96 15.87 2.25 0.04 -1.93 16 24 C 0.15 1.65 3.51 -67.93 -0.24 1.41 16 25 C -0.18 -1.81 9.12 37.16 0.34 -1.47 16 26 C -0.17 -1.87 9.12 37.16 0.34 -1.53 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.17 3.20 5.38 -52.49 -0.28 2.92 16 31 H 0.29 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.16 2.44 7.60 -52.49 -0.40 2.04 16 33 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.10 0.92 8.13 -51.92 -0.42 0.49 16 35 H 0.08 1.08 5.98 -51.93 -0.31 0.77 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.01 6.37 -51.93 -0.33 0.68 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -33.12 358.02 -6.68 -39.80 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -4.67 Total: 3.78 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: -0.50 Total: -30.97 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 0.57 Total: -29.67 kcal Atomic # 8 Polarization: -63.52 SS G_CDS: -1.99 Total: -65.51 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 64.92 SS G_CDS: -0.50 Total: 64.42 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.12 -6.68 -39.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346432851.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.464 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds