Wall clock time and date at job start Wed Apr 1 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99392 * 2 1 4 4 H 1.48506 * 109.46864 * 239.99894 * 3 2 1 5 5 H 1.48495 * 109.47489 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46986 * 120.00251 * 3 2 1 7 7 C 1.37869 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00093 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46840 * 300.00031 * 9 7 2 11 11 N 1.46498 * 109.47204 * 179.97438 * 9 7 2 12 12 C 1.34778 * 119.99818 * 155.00038 * 11 9 7 13 13 O 1.21590 * 120.00051 * 4.86896 * 12 11 9 14 14 N 1.34775 * 119.99740 * 184.87190 * 12 11 9 15 15 N 1.36599 * 120.00446 * 5.03370 * 14 12 11 16 16 C 1.46471 * 111.00413 * 235.40132 * 15 14 12 17 17 C 1.53178 * 109.82977 * 162.95421 * 16 15 14 18 18 S 1.81820 * 108.67728 * 62.68367 * 17 16 15 19 19 O 1.42099 * 108.70080 * 61.93530 * 18 17 16 20 20 O 1.42099 * 108.70128 * 193.28852 * 18 17 16 21 21 C 1.81826 * 101.01788 * 307.68090 * 18 17 16 22 22 C 1.46511 * 110.94167 * 109.61642 * 15 14 12 23 23 C 1.52998 * 109.46995 * 59.99902 * 9 7 2 24 24 F 1.39896 * 109.47379 * 179.97438 * 23 9 7 25 25 F 1.39903 * 109.47271 * 300.00447 * 23 9 7 26 26 F 1.39904 * 109.47279 * 59.99738 * 23 9 7 27 27 H 0.97002 * 120.00630 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00410 * 335.00507 * 11 9 7 29 29 H 0.97007 * 119.99435 * 185.03900 * 14 12 11 30 30 H 1.09004 * 109.39747 * 42.86968 * 16 15 14 31 31 H 1.08993 * 109.39745 * 283.04642 * 16 15 14 32 32 H 1.08996 * 109.60479 * 182.43554 * 17 16 15 33 33 H 1.08997 * 109.60428 * 302.92573 * 17 16 15 34 34 H 1.09000 * 109.59733 * 172.07243 * 21 18 17 35 35 H 1.08997 * 109.60355 * 292.55719 * 21 18 17 36 36 H 1.09005 * 109.46507 * 76.94897 * 22 15 14 37 37 H 1.08997 * 109.34265 * 317.11757 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 1 0.6249 -2.5563 0.8920 11 7 2.2032 -3.6126 0.0015 12 6 1.8375 -4.8120 0.4956 13 8 0.6921 -4.9959 0.8597 14 7 2.7415 -5.8075 0.5860 15 7 4.0504 -5.5721 0.2743 16 6 4.5212 -6.5037 -0.7532 17 6 5.8118 -5.9724 -1.3843 18 16 7.0947 -5.8834 -0.0989 19 8 7.3367 -7.1937 0.3948 20 8 8.1822 -5.1137 -0.5931 21 6 6.2341 -4.9262 1.1852 22 6 4.8875 -5.5958 1.4765 23 6 0.3711 -2.5810 -1.2471 24 9 -0.3279 -3.7929 -1.2464 25 9 -0.5381 -1.5177 -1.2475 26 9 1.1749 -2.5076 -2.3898 27 1 -0.4851 0.8400 -0.0004 28 1 3.0968 -3.4866 -0.3542 29 1 2.4625 -6.6913 0.8725 30 1 3.7577 -6.6084 -1.5242 31 1 4.7134 -7.4759 -0.2997 32 1 6.1353 -6.6462 -2.1776 33 1 5.6359 -4.9781 -1.7948 34 1 6.8371 -4.9074 2.0930 35 1 6.0677 -3.9083 0.8328 36 1 5.0553 -6.6286 1.7819 37 1 4.3821 -5.0585 2.2790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364443845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:06 Heat of formation + Delta-G solvation = -186.187435 kcal Electronic energy + Delta-G solvation = -30223.024961 eV Core-core repulsion = 25329.503894 eV Total energy + Delta-G solvation = -4893.521067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.080 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -48.32353 -45.97309 -45.59589 -40.16561 -38.16405 -37.22415 -36.33178 -34.68813 -33.55035 -32.43361 -32.31982 -28.80531 -27.65419 -24.56862 -24.52116 -22.44326 -21.91161 -20.11706 -19.23336 -18.52790 -18.09365 -16.86307 -16.77025 -16.71265 -16.60440 -16.53425 -16.19498 -15.95522 -15.51685 -14.89885 -14.68898 -14.37225 -14.11529 -13.53649 -13.33309 -13.06007 -12.91455 -12.84750 -12.76364 -12.50354 -12.48269 -12.37282 -12.30775 -12.26252 -12.23316 -11.96296 -11.80360 -11.18946 -11.10980 -10.88319 -10.83851 -10.49680 -10.43044 -9.89561 -9.69044 -9.42963 -9.14113 -8.72973 -8.22019 -6.24824 -4.48940 -0.32252 2.29797 2.43633 3.18310 3.23907 3.24986 3.30274 3.56363 3.66682 3.68458 4.07725 4.16306 4.28166 4.45191 4.57646 4.61165 4.67256 4.78521 4.92322 4.94076 5.30086 5.35513 5.43351 5.45212 5.84009 5.89107 6.21171 6.23369 6.78573 7.08331 7.19967 7.33321 7.60392 7.65012 8.47484 8.66423 9.08408 9.21054 10.66597 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.003975 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.510287 B = 7042.146413 C = 8133.228628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.260 3.740 10 H 0.083 0.917 11 N -0.709 5.709 12 C 0.720 3.280 13 O -0.577 6.577 14 N -0.590 5.590 15 N -0.321 5.321 16 C 0.047 3.953 17 C -0.594 4.594 18 S 2.412 3.588 19 O -0.941 6.941 20 O -0.938 6.938 21 C -0.593 4.593 22 C 0.045 3.955 23 C 0.416 3.584 24 F -0.216 7.216 25 F -0.138 7.138 26 F -0.210 7.210 27 H 0.269 0.731 28 H 0.404 0.596 29 H 0.397 0.603 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.065 0.935 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.978 -10.541 0.182 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.143 4.143 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.153 3.847 10 H 0.101 0.899 11 N -0.362 5.362 12 C 0.420 3.580 13 O -0.451 6.451 14 N -0.344 5.344 15 N -0.142 5.142 16 C -0.082 4.082 17 C -0.725 4.725 18 S 2.594 3.406 19 O -0.938 6.938 20 O -0.935 6.935 21 C -0.724 4.724 22 C -0.084 4.084 23 C 0.359 3.641 24 F -0.198 7.198 25 F -0.119 7.119 26 F -0.192 7.192 27 H 0.079 0.921 28 H 0.240 0.760 29 H 0.238 0.762 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.169 0.831 36 H 0.083 0.917 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.769 -10.219 0.210 14.847 hybrid contribution -0.068 0.095 -0.135 0.178 sum 10.700 -10.124 0.075 14.731 Atomic orbital electron populations 1.70393 1.05840 1.27471 1.43560 1.25067 0.95133 1.00046 0.94088 0.86290 0.79344 0.81401 0.78900 1.19811 1.20908 1.19828 1.20823 0.93760 0.88024 1.56222 0.90489 1.19637 0.88278 0.85157 0.91603 0.89947 1.45186 1.17943 1.09211 1.63842 1.15795 0.83041 0.80598 0.78524 1.91005 1.16928 1.81065 1.56105 1.44749 1.00662 1.13347 1.75613 1.61765 0.92773 1.50550 1.09117 1.22273 0.96451 0.93755 0.95715 1.30208 1.12491 1.12523 1.17270 1.08228 0.77300 0.76263 0.78829 1.93594 1.84063 1.36741 1.79373 1.93616 1.48679 1.72048 1.79199 1.30201 1.07768 1.15599 1.18804 1.22359 0.91303 1.00828 0.93877 1.23169 0.80910 0.72823 0.87187 1.93075 1.81473 1.48278 1.96961 1.93403 1.68446 1.53851 1.96209 1.92984 1.74476 1.96198 1.55544 0.92063 0.76039 0.76156 0.87152 0.91552 0.83860 0.83199 0.83847 0.83136 0.91689 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.47 9.50 55.43 0.53 -21.94 16 2 C 0.07 1.65 5.20 -17.82 -0.09 1.56 16 3 Si 0.91 19.54 29.54 -169.99 -5.02 14.52 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.55 -13.50 8.46 -34.44 -0.29 -13.79 16 8 H 0.08 1.76 7.74 -52.48 -0.41 1.36 16 9 C 0.26 6.21 2.20 -69.08 -0.15 6.06 16 10 H 0.08 2.21 7.65 -51.93 -0.40 1.81 16 11 N -0.71 -13.72 4.93 -59.81 -0.29 -14.02 16 12 C 0.72 13.26 8.26 -86.92 -0.72 12.54 16 13 O -0.58 -13.03 15.55 5.29 0.08 -12.95 16 14 N -0.59 -7.47 4.73 27.63 0.13 -7.34 16 15 N -0.32 -3.16 3.61 -114.19 -0.41 -3.57 16 16 C 0.05 0.36 5.68 -3.97 -0.02 0.33 16 17 C -0.59 -3.79 6.57 37.25 0.24 -3.55 16 18 S 2.41 19.19 5.34 -107.50 -0.57 18.62 16 19 O -0.94 -10.14 18.10 -57.81 -1.05 -11.19 16 20 O -0.94 -10.99 18.11 -57.81 -1.05 -12.04 16 21 C -0.59 -3.99 6.58 37.25 0.25 -3.75 16 22 C 0.05 0.37 5.69 -3.94 -0.02 0.34 16 23 C 0.42 10.41 2.81 37.16 0.10 10.52 16 24 F -0.22 -5.40 15.48 2.25 0.03 -5.36 16 25 F -0.14 -3.75 12.91 2.25 0.03 -3.72 16 26 F -0.21 -5.06 16.94 2.25 0.04 -5.02 16 27 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 28 H 0.40 6.88 7.63 -40.82 -0.31 6.57 16 29 H 0.40 4.26 8.92 -185.15 -1.65 2.60 16 30 H 0.11 0.89 8.11 -51.93 -0.42 0.46 16 31 H 0.07 0.41 7.93 -51.93 -0.41 0.00 16 32 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.15 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.15 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.43 7.93 -51.93 -0.41 0.02 16 37 H 0.11 0.99 8.11 -51.93 -0.42 0.57 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -35.21 332.40 -8.51 -43.71 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.26 Total: 5.02 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.71 Total: 10.27 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.05 Total: -46.87 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -2.01 Total: -36.18 kcal Atomic # 9 Polarization: -14.21 SS G_CDS: 0.10 Total: -14.11 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 19.19 SS G_CDS: -0.57 Total: 18.62 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.21 -8.51 -43.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364443845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.473 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds