Wall clock time and date at job start Wed Apr 1 2020 03:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99392 * 2 1 4 4 H 1.48506 * 109.46864 * 239.99894 * 3 2 1 5 5 H 1.48495 * 109.47489 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46986 * 120.00251 * 3 2 1 7 7 C 1.37869 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00093 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46840 * 300.00031 * 9 7 2 11 11 N 1.46498 * 109.47204 * 179.97438 * 9 7 2 12 12 C 1.34778 * 119.99818 * 155.00038 * 11 9 7 13 13 O 1.21590 * 120.00051 * 4.86896 * 12 11 9 14 14 N 1.34775 * 119.99740 * 184.87190 * 12 11 9 15 15 N 1.36599 * 120.00446 * 5.03370 * 14 12 11 16 16 C 1.46471 * 111.00413 * 235.40132 * 15 14 12 17 17 C 1.53178 * 109.82977 * 162.95421 * 16 15 14 18 18 S 1.81820 * 108.67728 * 62.68367 * 17 16 15 19 19 O 1.42099 * 108.70080 * 61.93530 * 18 17 16 20 20 O 1.42099 * 108.70128 * 193.28852 * 18 17 16 21 21 C 1.81826 * 101.01788 * 307.68090 * 18 17 16 22 22 C 1.46511 * 110.94167 * 109.61642 * 15 14 12 23 23 C 1.52998 * 109.46995 * 59.99902 * 9 7 2 24 24 F 1.39896 * 109.47379 * 179.97438 * 23 9 7 25 25 F 1.39903 * 109.47271 * 300.00447 * 23 9 7 26 26 F 1.39904 * 109.47279 * 59.99738 * 23 9 7 27 27 H 0.97002 * 120.00630 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00410 * 335.00507 * 11 9 7 29 29 H 0.97007 * 119.99435 * 185.03900 * 14 12 11 30 30 H 1.09004 * 109.39747 * 42.86968 * 16 15 14 31 31 H 1.08993 * 109.39745 * 283.04642 * 16 15 14 32 32 H 1.08996 * 109.60479 * 182.43554 * 17 16 15 33 33 H 1.08997 * 109.60428 * 302.92573 * 17 16 15 34 34 H 1.09000 * 109.59733 * 172.07243 * 21 18 17 35 35 H 1.08997 * 109.60355 * 292.55719 * 21 18 17 36 36 H 1.09005 * 109.46507 * 76.94897 * 22 15 14 37 37 H 1.08997 * 109.34265 * 317.11757 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 1 0.6249 -2.5563 0.8920 11 7 2.2032 -3.6126 0.0015 12 6 1.8375 -4.8120 0.4956 13 8 0.6921 -4.9959 0.8597 14 7 2.7415 -5.8075 0.5860 15 7 4.0504 -5.5721 0.2743 16 6 4.5212 -6.5037 -0.7532 17 6 5.8118 -5.9724 -1.3843 18 16 7.0947 -5.8834 -0.0989 19 8 7.3367 -7.1937 0.3948 20 8 8.1822 -5.1137 -0.5931 21 6 6.2341 -4.9262 1.1852 22 6 4.8875 -5.5958 1.4765 23 6 0.3711 -2.5810 -1.2471 24 9 -0.3279 -3.7929 -1.2464 25 9 -0.5381 -1.5177 -1.2475 26 9 1.1749 -2.5076 -2.3898 27 1 -0.4851 0.8400 -0.0004 28 1 3.0968 -3.4866 -0.3542 29 1 2.4625 -6.6913 0.8725 30 1 3.7577 -6.6084 -1.5242 31 1 4.7134 -7.4759 -0.2997 32 1 6.1353 -6.6462 -2.1776 33 1 5.6359 -4.9781 -1.7948 34 1 6.8371 -4.9074 2.0930 35 1 6.0677 -3.9083 0.8328 36 1 5.0553 -6.6286 1.7819 37 1 4.3821 -5.0585 2.2790 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364443845.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:05 Heat of formation + Delta-G solvation = -214.738372 kcal Electronic energy + Delta-G solvation = -30224.263022 eV Core-core repulsion = 25329.503894 eV Total energy + Delta-G solvation = -4894.759129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.080 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.33132 -47.96108 -47.65130 -41.33652 -39.30560 -38.00025 -37.08254 -36.44016 -34.65459 -34.12072 -32.90982 -30.26842 -28.84174 -26.50976 -25.14254 -23.76059 -23.08966 -21.66304 -20.01082 -19.87557 -19.10954 -18.74717 -18.57982 -18.50295 -17.52824 -17.40253 -17.25619 -16.87498 -16.70767 -16.58220 -15.98074 -15.50432 -15.22118 -15.00967 -14.86785 -14.46698 -14.37229 -14.21572 -14.14090 -13.96999 -13.84925 -13.72783 -13.53783 -13.47097 -13.21909 -13.07812 -12.98199 -12.81168 -12.71582 -12.57073 -12.18309 -11.80152 -11.54774 -11.41661 -11.10866 -10.62536 -10.54373 -10.09090 -9.82481 -8.15644 -6.45731 -0.94298 1.43449 1.51765 1.52941 1.61211 1.71148 2.09883 2.33864 2.50161 2.64570 2.71057 3.00564 3.03453 3.45138 3.47448 3.84793 3.92495 3.94571 4.00212 4.05822 4.10760 4.27150 4.31338 4.70083 4.74016 4.86120 4.90602 4.96557 5.51357 5.52517 5.61920 5.71585 5.88806 6.25431 6.59379 7.23212 7.32707 7.71090 8.76630 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.003975 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.510287 B = 7042.146413 C = 8133.228628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.017 3.983 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.094 0.906 9 C 0.268 3.732 10 H 0.046 0.954 11 N -0.703 5.703 12 C 0.720 3.280 13 O -0.624 6.624 14 N -0.570 5.570 15 N -0.333 5.333 16 C 0.042 3.958 17 C -0.583 4.583 18 S 2.426 3.574 19 O -0.971 6.971 20 O -0.979 6.979 21 C -0.584 4.584 22 C 0.041 3.959 23 C 0.411 3.589 24 F -0.218 7.218 25 F -0.153 7.153 26 F -0.204 7.204 27 H 0.267 0.733 28 H 0.417 0.583 29 H 0.410 0.590 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.083 0.917 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.875 -10.727 -0.033 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.189 4.189 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.112 0.888 9 C 0.160 3.840 10 H 0.064 0.936 11 N -0.357 5.357 12 C 0.421 3.579 13 O -0.501 6.501 14 N -0.322 5.322 15 N -0.155 5.155 16 C -0.086 4.086 17 C -0.715 4.715 18 S 2.612 3.388 19 O -0.968 6.968 20 O -0.976 6.976 21 C -0.716 4.716 22 C -0.087 4.087 23 C 0.355 3.645 24 F -0.200 7.200 25 F -0.134 7.134 26 F -0.186 7.186 27 H 0.077 0.923 28 H 0.254 0.746 29 H 0.253 0.747 30 H 0.129 0.871 31 H 0.103 0.897 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.176 0.824 36 H 0.101 0.899 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.761 -10.472 -0.004 16.508 hybrid contribution -0.665 0.070 -0.077 0.673 sum 12.095 -10.402 -0.081 15.953 Atomic orbital electron populations 1.70531 1.07454 1.28073 1.44848 1.25944 0.95800 1.03494 0.93620 0.85277 0.78022 0.77054 0.79372 1.19105 1.21366 1.18632 1.21181 0.94593 0.88143 1.55459 0.88797 1.19209 0.88421 0.86792 0.89558 0.93581 1.44880 1.17684 1.08733 1.64424 1.15867 0.83114 0.80987 0.77978 1.90975 1.19368 1.82007 1.57794 1.44263 1.01473 1.12323 1.74150 1.61778 0.91272 1.51982 1.10468 1.22388 0.96807 0.94230 0.95211 1.30143 1.10594 1.13802 1.16963 1.07635 0.77120 0.75160 0.78919 1.93552 1.84950 1.38219 1.80077 1.93566 1.51274 1.72693 1.80083 1.30152 1.06821 1.15390 1.19232 1.22425 0.91303 1.02100 0.92895 1.23391 0.80890 0.72349 0.87881 1.93066 1.81612 1.48296 1.97008 1.93373 1.69072 1.54630 1.96330 1.92981 1.74180 1.96160 1.55252 0.92296 0.74553 0.74684 0.87142 0.89658 0.81489 0.82310 0.81758 0.82411 0.89860 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.35 9.50 21.44 0.20 -47.15 16 2 C 0.02 0.83 5.20 84.65 0.44 1.27 16 3 Si 0.98 39.19 29.54 68.60 2.03 41.21 16 4 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.29 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.56 -26.81 8.46 25.60 0.22 -26.59 16 8 H 0.09 4.10 7.74 -2.91 -0.02 4.07 16 9 C 0.27 12.91 2.20 44.25 0.10 13.00 16 10 H 0.05 2.57 7.65 -2.39 -0.02 2.55 16 11 N -0.70 -26.64 4.93 -461.41 -2.27 -28.92 16 12 C 0.72 26.06 8.26 179.05 1.48 27.54 16 13 O -0.62 -28.48 15.55 -4.00 -0.06 -28.54 16 14 N -0.57 -13.43 4.73 -184.74 -0.87 -14.31 16 15 N -0.33 -5.71 3.61 -515.18 -1.86 -7.57 16 16 C 0.04 0.51 5.68 86.44 0.49 1.00 16 17 C -0.58 -5.69 6.57 72.04 0.47 -5.22 16 18 S 2.43 33.52 5.34 -56.49 -0.30 33.22 16 19 O -0.97 -19.12 18.10 -127.39 -2.31 -21.42 16 20 O -0.98 -21.63 18.11 -127.39 -2.31 -23.93 16 21 C -0.58 -6.29 6.58 72.04 0.47 -5.81 16 22 C 0.04 0.56 5.69 86.44 0.49 1.05 16 23 C 0.41 20.75 2.81 71.98 0.20 20.96 16 24 F -0.22 -11.02 15.48 44.97 0.70 -10.32 16 25 F -0.15 -8.46 12.91 44.97 0.58 -7.88 16 26 F -0.20 -9.68 16.94 44.97 0.76 -8.92 16 27 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 28 H 0.42 13.41 7.63 -92.71 -0.71 12.71 16 29 H 0.41 8.01 8.92 -215.49 -1.92 6.08 16 30 H 0.11 1.44 8.11 -2.39 -0.02 1.42 16 31 H 0.09 0.77 7.93 -2.39 -0.02 0.75 16 32 H 0.17 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.16 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.16 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 0.86 7.93 -2.38 -0.02 0.84 16 37 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 Total: -1.00 -76.32 332.40 -2.82 -79.14 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -1.47 Total: 18.19 kcal Atomic # 6 Polarization: 22.83 SS G_CDS: 4.37 Total: 27.20 kcal Atomic # 7 Polarization: -93.14 SS G_CDS: -4.80 Total: -97.94 kcal Atomic # 8 Polarization: -69.23 SS G_CDS: -4.67 Total: -73.90 kcal Atomic # 9 Polarization: -29.16 SS G_CDS: 2.04 Total: -27.12 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.21 kcal Atomic # 16 Polarization: 33.52 SS G_CDS: -0.30 Total: 33.22 kcal Total: -76.32 -2.82 -79.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364443845.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.597 kcal (2) G-P(sol) polarization free energy of solvation -76.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds