Wall clock time and date at job start Wed Apr 1 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34763 * 117.00525 * 2 1 4 4 O 1.21543 * 119.99770 * 359.97438 * 3 2 1 5 5 C 1.47228 * 120.00249 * 180.27169 * 3 2 1 6 6 C 1.47056 * 127.19927 * 359.74591 * 5 3 2 7 7 C 1.34158 * 105.94884 * 179.97438 * 6 5 3 8 8 O 1.34224 * 109.14620 * 0.02562 * 7 6 5 9 9 C 1.33621 * 110.92000 * 359.72552 * 8 7 6 10 10 S 1.76198 * 125.80752 * 180.28853 * 9 8 7 11 11 O 1.42095 * 106.40564 * 83.72614 * 10 9 8 12 12 O 1.42105 * 106.40159 * 216.64962 * 10 9 8 13 13 N 1.65600 * 107.21824 * 330.18512 * 10 9 8 14 14 C 1.47029 * 125.64652 * 90.02534 * 13 10 9 15 15 C 1.54322 * 107.27111 * 181.02522 * 14 13 10 16 16 C 1.55161 * 102.94380 * 22.19380 * 15 14 13 17 17 O 1.42897 * 111.00337 * 82.60918 * 16 15 14 18 18 C 1.50697 * 111.00489 * 206.42366 * 16 15 14 19 19 H 1.08005 * 120.00094 * 118.54167 * 18 16 15 20 20 C 1.37878 * 120.00294 * 298.54857 * 18 16 15 21 21 N 1.31515 * 119.99342 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00142 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47321 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47370 * 119.99787 * 22 20 18 25 25 H 1.48503 * 109.46785 * 239.99319 * 22 20 18 26 26 C 1.47429 * 125.65228 * 269.72013 * 13 10 9 27 27 H 1.09010 * 109.46220 * 60.00070 * 1 2 3 28 28 H 1.08994 * 109.47101 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46894 * 300.00924 * 1 2 3 30 30 H 1.08004 * 127.02866 * 0.02666 * 6 5 3 31 31 H 1.08000 * 125.43013 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.88239 * 300.44423 * 14 13 10 33 33 H 1.09002 * 109.88257 * 61.60855 * 14 13 10 34 34 H 1.08995 * 110.72284 * 140.55508 * 15 14 13 35 35 H 1.08995 * 110.72004 * 263.65151 * 15 14 13 36 36 H 0.96695 * 113.99851 * 61.45678 * 17 16 15 37 37 H 0.97006 * 119.99616 * 180.02562 * 21 20 18 38 38 H 1.09001 * 110.36176 * 274.74769 * 26 13 10 39 39 H 1.09000 * 110.36496 * 37.06713 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2007 0.0000 4 8 1.4021 2.2201 -0.0005 5 6 3.5342 1.2777 -0.0060 6 6 4.4833 0.1544 -0.0073 7 6 5.7065 0.7054 -0.0140 8 8 5.5872 2.0423 -0.0163 9 6 4.3016 2.4065 -0.0173 10 16 3.6992 4.0623 -0.0275 11 8 3.7005 4.4815 -1.3852 12 8 2.5351 4.0709 0.7875 13 7 4.8223 4.9973 0.7516 14 6 5.9602 5.6778 0.1160 15 6 6.7416 6.4031 1.2317 16 6 6.3249 5.6269 2.5089 17 8 7.1038 4.4388 2.6632 18 6 6.4312 6.5016 3.7315 19 1 5.5509 6.7189 4.3183 20 6 7.6523 7.0247 4.1008 21 7 8.7242 6.7598 3.3864 22 14 7.7842 8.1084 5.6166 23 1 6.4444 8.2516 6.2408 24 1 8.7199 7.4881 6.5887 25 1 8.2932 9.4473 5.2250 26 6 4.8431 5.2904 2.1963 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 4.2445 -0.8989 -0.0043 31 1 6.6388 0.1601 -0.0162 32 1 6.6041 4.9461 -0.3721 33 1 5.5984 6.4018 -0.6141 34 1 7.8157 6.3229 1.0650 35 1 6.4398 7.4485 1.2968 36 1 8.0519 4.6004 2.7632 37 1 9.5834 7.1275 3.6464 38 1 4.2026 6.1437 2.4194 39 1 4.5247 4.4169 2.7652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364884894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:22 Heat of formation + Delta-G solvation = -167.890866 kcal Electronic energy + Delta-G solvation = -29427.068873 eV Core-core repulsion = 25043.905194 eV Total energy + Delta-G solvation = -4383.163679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.085 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.76883 -40.34188 -38.10102 -37.05215 -36.60272 -35.64496 -34.31694 -33.34422 -32.22759 -30.38731 -29.27002 -28.31069 -28.14031 -24.90902 -24.36179 -22.26278 -21.71626 -20.94542 -19.85908 -19.26954 -18.38289 -17.61139 -17.18893 -17.01353 -16.73423 -16.58778 -16.17683 -15.46328 -15.35294 -14.96357 -14.51351 -14.26269 -13.97709 -13.51293 -13.45377 -13.30963 -13.04293 -12.96967 -12.44546 -12.28326 -11.99304 -11.88691 -11.85251 -11.79964 -11.58498 -11.35007 -11.05209 -10.98433 -10.82869 -10.74779 -10.50632 -10.43706 -10.21072 -10.02392 -9.43512 -9.38198 -8.72665 -8.47092 -8.21755 -6.29214 -4.36898 0.34331 0.53650 1.70853 2.31798 2.51381 2.72098 3.18596 3.27970 3.32239 3.38259 3.81091 4.23271 4.25664 4.51532 4.64632 4.91362 4.95588 4.97206 5.00993 5.07122 5.33047 5.36654 5.37431 5.79574 5.90007 5.91296 5.99646 6.06908 6.17375 6.33109 6.50668 6.56517 6.73177 6.91851 6.99045 7.32817 7.37207 7.48623 7.73163 8.02088 8.66045 9.29710 9.38210 10.78124 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.003453 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.113881 B = 8107.622452 C = 8276.119976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.349 6.349 3 C 0.516 3.484 4 O -0.464 6.464 5 C -0.128 4.128 6 C -0.187 4.187 7 C 0.003 3.997 8 O -0.102 6.102 9 C -0.471 4.471 10 S 2.715 3.285 11 O -0.939 6.939 12 O -0.902 6.902 13 N -0.992 5.992 14 C 0.117 3.883 15 C -0.131 4.131 16 C 0.250 3.750 17 O -0.583 6.583 18 C -0.535 4.535 19 H 0.066 0.934 20 C 0.073 3.927 21 N -0.894 5.894 22 Si 0.902 3.098 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.133 3.867 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.172 0.828 31 H 0.221 0.779 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.381 0.619 37 H 0.267 0.733 38 H 0.082 0.918 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.566 -12.639 -7.561 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.358 3.642 4 O -0.350 6.350 5 C -0.132 4.132 6 C -0.207 4.207 7 C -0.067 4.067 8 O 0.007 5.993 9 C -0.599 4.599 10 S 2.794 3.206 11 O -0.929 6.929 12 O -0.892 6.892 13 N -0.834 5.834 14 C -0.007 4.007 15 C -0.171 4.171 16 C 0.209 3.791 17 O -0.391 6.391 18 C -0.574 4.574 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.533 5.533 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C 0.009 3.991 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.190 0.810 31 H 0.238 0.762 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.785 -12.266 -8.053 16.610 hybrid contribution 0.962 -0.132 1.010 1.401 sum -6.823 -12.398 -7.043 15.807 Atomic orbital electron populations 1.23368 0.75405 1.03880 1.03206 1.86520 1.23894 1.31685 1.84493 1.20049 0.87369 0.82380 0.74357 1.91102 1.65902 1.34831 1.43158 1.20415 0.91271 0.93396 1.08154 1.23058 0.90665 0.99762 1.07185 1.24544 1.00663 0.80914 1.00560 1.84056 1.23614 1.24075 1.67584 1.37229 0.86987 1.23309 1.12418 1.02209 0.72917 0.71455 0.74019 1.93603 1.86484 1.78814 1.34041 1.93711 1.41868 1.84603 1.69006 1.58469 1.44528 1.60687 1.19705 1.21968 0.86549 0.95487 0.96731 1.23172 1.00223 0.99209 0.94512 1.19664 0.85043 0.82619 0.91806 1.86100 1.23522 1.33576 1.95911 1.21512 0.95007 1.29997 1.10865 0.91561 1.24983 0.95548 0.95631 0.96826 1.69728 0.99477 1.45286 1.38850 0.86378 0.78335 0.79907 0.82424 1.19572 1.20882 1.20870 1.22322 0.99730 1.00475 0.76532 0.91524 0.87758 0.91284 0.81039 0.76247 0.92376 0.92044 0.89501 0.91182 0.76943 0.92323 0.90003 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 101.05 1.07 1.39 16 2 O -0.35 -4.47 10.48 -40.66 -0.43 -4.89 16 3 C 0.52 8.37 7.94 34.38 0.27 8.64 16 4 O -0.46 -8.76 13.12 -27.29 -0.36 -9.12 16 5 C -0.13 -2.05 6.31 -103.30 -0.65 -2.70 16 6 C -0.19 -2.24 11.05 -37.45 -0.41 -2.65 16 7 C 0.00 0.03 12.03 29.30 0.35 0.39 16 8 O -0.10 -1.61 10.52 7.71 0.08 -1.53 16 9 C -0.47 -8.20 7.37 30.11 0.22 -7.98 16 10 S 2.71 52.11 5.58 -107.50 -0.60 51.51 16 11 O -0.94 -19.07 17.60 -57.17 -1.01 -20.08 16 12 O -0.90 -18.91 14.52 -66.97 -0.97 -19.88 16 13 N -0.99 -19.31 3.70 -111.28 -0.41 -19.72 16 14 C 0.12 2.19 6.99 -3.06 -0.02 2.17 16 15 C -0.13 -2.77 5.37 -24.90 -0.13 -2.91 16 16 C 0.25 5.77 0.87 -89.50 -0.08 5.70 16 17 O -0.58 -13.85 13.17 -35.23 -0.46 -14.32 16 18 C -0.54 -13.45 8.27 -34.44 -0.28 -13.73 16 19 H 0.07 1.66 7.79 -52.48 -0.41 1.25 16 20 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 21 N -0.89 -22.27 10.76 55.43 0.60 -21.68 16 22 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.13 2.80 6.17 -2.41 -0.01 2.79 16 27 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.17 1.46 8.06 -52.48 -0.42 1.03 16 31 H 0.22 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.90 7.55 -51.93 -0.39 1.51 16 35 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 36 H 0.38 9.10 7.56 45.56 0.34 9.45 16 37 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 38 H 0.08 1.64 8.03 -51.93 -0.42 1.23 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -31.83 350.76 -6.88 -38.71 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -3.81 Total: 8.17 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 0.22 Total: -7.18 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.18 Total: -41.40 kcal Atomic # 8 Polarization: -66.67 SS G_CDS: -3.15 Total: -69.82 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 52.11 SS G_CDS: -0.60 Total: 51.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.83 -6.88 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364884894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.185 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds