Wall clock time and date at job start Wed Apr 1 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34763 * 117.00525 * 2 1 4 4 O 1.21543 * 119.99770 * 359.97438 * 3 2 1 5 5 C 1.47228 * 120.00249 * 180.27169 * 3 2 1 6 6 C 1.47056 * 127.19927 * 359.74591 * 5 3 2 7 7 C 1.34158 * 105.94884 * 179.97438 * 6 5 3 8 8 O 1.34224 * 109.14620 * 0.02562 * 7 6 5 9 9 C 1.33621 * 110.92000 * 359.72552 * 8 7 6 10 10 S 1.76198 * 125.80752 * 180.28853 * 9 8 7 11 11 O 1.42095 * 106.40564 * 83.72614 * 10 9 8 12 12 O 1.42105 * 106.40159 * 216.64962 * 10 9 8 13 13 N 1.65600 * 107.21824 * 330.18512 * 10 9 8 14 14 C 1.47029 * 125.64652 * 90.02534 * 13 10 9 15 15 C 1.54322 * 107.27111 * 181.02522 * 14 13 10 16 16 C 1.55161 * 102.94380 * 22.19380 * 15 14 13 17 17 O 1.42897 * 111.00337 * 82.60918 * 16 15 14 18 18 C 1.50697 * 111.00489 * 206.42366 * 16 15 14 19 19 H 1.08005 * 120.00094 * 118.54167 * 18 16 15 20 20 C 1.37878 * 120.00294 * 298.54857 * 18 16 15 21 21 N 1.31515 * 119.99342 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 120.00142 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47321 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47370 * 119.99787 * 22 20 18 25 25 H 1.48503 * 109.46785 * 239.99319 * 22 20 18 26 26 C 1.47429 * 125.65228 * 269.72013 * 13 10 9 27 27 H 1.09010 * 109.46220 * 60.00070 * 1 2 3 28 28 H 1.08994 * 109.47101 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46894 * 300.00924 * 1 2 3 30 30 H 1.08004 * 127.02866 * 0.02666 * 6 5 3 31 31 H 1.08000 * 125.43013 * 179.97438 * 7 6 5 32 32 H 1.09001 * 109.88239 * 300.44423 * 14 13 10 33 33 H 1.09002 * 109.88257 * 61.60855 * 14 13 10 34 34 H 1.08995 * 110.72284 * 140.55508 * 15 14 13 35 35 H 1.08995 * 110.72004 * 263.65151 * 15 14 13 36 36 H 0.96695 * 113.99851 * 61.45678 * 17 16 15 37 37 H 0.97006 * 119.99616 * 180.02562 * 21 20 18 38 38 H 1.09001 * 110.36176 * 274.74769 * 26 13 10 39 39 H 1.09000 * 110.36496 * 37.06713 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2007 0.0000 4 8 1.4021 2.2201 -0.0005 5 6 3.5342 1.2777 -0.0060 6 6 4.4833 0.1544 -0.0073 7 6 5.7065 0.7054 -0.0140 8 8 5.5872 2.0423 -0.0163 9 6 4.3016 2.4065 -0.0173 10 16 3.6992 4.0623 -0.0275 11 8 3.7005 4.4815 -1.3852 12 8 2.5351 4.0709 0.7875 13 7 4.8223 4.9973 0.7516 14 6 5.9602 5.6778 0.1160 15 6 6.7416 6.4031 1.2317 16 6 6.3249 5.6269 2.5089 17 8 7.1038 4.4388 2.6632 18 6 6.4312 6.5016 3.7315 19 1 5.5509 6.7189 4.3183 20 6 7.6523 7.0247 4.1008 21 7 8.7242 6.7598 3.3864 22 14 7.7842 8.1084 5.6166 23 1 6.4444 8.2516 6.2408 24 1 8.7199 7.4881 6.5887 25 1 8.2932 9.4473 5.2250 26 6 4.8431 5.2904 2.1963 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 4.2445 -0.8989 -0.0043 31 1 6.6388 0.1601 -0.0162 32 1 6.6041 4.9461 -0.3721 33 1 5.5984 6.4018 -0.6141 34 1 7.8157 6.3229 1.0650 35 1 6.4398 7.4485 1.2968 36 1 8.0519 4.6004 2.7632 37 1 9.5834 7.1275 3.6464 38 1 4.2026 6.1437 2.4194 39 1 4.5247 4.4169 2.7652 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364884894.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:21 Heat of formation + Delta-G solvation = -192.491628 kcal Electronic energy + Delta-G solvation = -29428.135642 eV Core-core repulsion = 25043.905194 eV Total energy + Delta-G solvation = -4384.230448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.085 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.86156 -41.48795 -39.78950 -38.56522 -37.77587 -37.17984 -36.06665 -34.45600 -34.13497 -31.44837 -30.95523 -30.00445 -29.00744 -26.73600 -25.48571 -23.33272 -23.22741 -22.17542 -21.61629 -20.46017 -19.84020 -19.07240 -18.65394 -18.52208 -17.93174 -17.74329 -17.32070 -16.92937 -16.79997 -16.53465 -16.12334 -15.87813 -15.15859 -15.04267 -14.63606 -14.48680 -14.41734 -14.15613 -13.97398 -13.68215 -13.51851 -13.43547 -13.39741 -13.16008 -13.14420 -12.90669 -12.78729 -12.57223 -12.24419 -12.16967 -12.01419 -11.93294 -11.81195 -11.33526 -11.20804 -10.60026 -10.42646 -10.08242 -10.02195 -8.18234 -6.31884 -1.08040 -0.72479 0.75183 1.18307 1.33808 1.44371 1.49608 1.56741 1.58917 2.15110 2.38050 2.43863 3.06404 3.17447 3.21576 3.51012 3.68246 3.86704 4.10574 4.17132 4.24302 4.27769 4.28041 4.40304 4.55303 4.56707 4.65044 4.70259 4.90939 5.00045 5.03780 5.14159 5.23380 5.33631 5.49588 5.53777 5.61736 5.84097 6.15604 6.33517 6.72365 7.38484 7.47983 8.87584 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019055 B = 0.003453 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.113881 B = 8107.622452 C = 8276.119976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.340 6.340 3 C 0.512 3.488 4 O -0.501 6.501 5 C -0.138 4.138 6 C -0.181 4.181 7 C 0.018 3.982 8 O -0.118 6.118 9 C -0.510 4.510 10 S 2.733 3.267 11 O -0.959 6.959 12 O -0.928 6.928 13 N -0.995 5.995 14 C 0.117 3.883 15 C -0.122 4.122 16 C 0.238 3.762 17 O -0.586 6.586 18 C -0.559 4.559 19 H 0.058 0.942 20 C 0.038 3.962 21 N -0.905 5.905 22 Si 0.956 3.044 23 H -0.274 1.274 24 H -0.281 1.281 25 H -0.279 1.279 26 C 0.136 3.864 27 H 0.067 0.933 28 H 0.147 0.853 29 H 0.063 0.937 30 H 0.210 0.790 31 H 0.273 0.727 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.377 0.623 37 H 0.269 0.731 38 H 0.085 0.915 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 -14.688 -7.801 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.256 6.256 3 C 0.356 3.644 4 O -0.390 6.390 5 C -0.143 4.143 6 C -0.200 4.200 7 C -0.051 4.051 8 O -0.010 6.010 9 C -0.642 4.642 10 S 2.817 3.183 11 O -0.949 6.949 12 O -0.919 6.919 13 N -0.836 5.836 14 C -0.007 4.007 15 C -0.162 4.162 16 C 0.197 3.803 17 O -0.394 6.394 18 C -0.598 4.598 19 H 0.076 0.924 20 C -0.164 4.164 21 N -0.544 5.544 22 Si 0.783 3.217 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.205 1.205 26 C 0.012 3.988 27 H 0.086 0.914 28 H 0.165 0.835 29 H 0.082 0.918 30 H 0.227 0.773 31 H 0.289 0.711 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.227 0.773 37 H 0.079 0.921 38 H 0.103 0.897 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.303 -14.291 -8.302 18.069 hybrid contribution 0.803 0.303 1.072 1.373 sum -6.500 -13.988 -7.230 17.035 Atomic orbital electron populations 1.23780 0.73337 1.06632 1.03083 1.86517 1.25848 1.29682 1.83581 1.20295 0.87707 0.82805 0.73577 1.91081 1.66728 1.36194 1.45012 1.20812 0.91723 0.94597 1.07144 1.23542 0.89539 1.00531 1.06376 1.25694 1.02687 0.79249 0.97447 1.84033 1.22685 1.26457 1.67813 1.36418 0.88312 1.22692 1.16825 1.01222 0.72292 0.71637 0.73197 1.93565 1.86735 1.79882 1.34720 1.93672 1.43348 1.85427 1.69408 1.58372 1.44703 1.61699 1.18860 1.22008 0.86427 0.96090 0.96163 1.22981 0.99889 0.98816 0.94534 1.19790 0.86022 0.82460 0.92036 1.86089 1.23318 1.34020 1.95994 1.21748 0.95089 1.30981 1.11951 0.92383 1.25558 0.95342 0.96549 0.98929 1.69789 0.99628 1.45473 1.39508 0.85536 0.77939 0.78543 0.79698 1.19842 1.20731 1.20504 1.22193 0.98606 1.00508 0.77527 0.91412 0.83499 0.91789 0.77288 0.71142 0.90995 0.90293 0.90436 0.91875 0.77336 0.92115 0.89698 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.57 113.37 1.20 1.60 16 2 O -0.34 -8.13 10.48 -56.74 -0.59 -8.72 16 3 C 0.51 16.39 7.94 70.18 0.56 16.94 16 4 O -0.50 -19.32 13.12 27.34 0.36 -18.96 16 5 C -0.14 -4.26 6.31 -19.01 -0.12 -4.38 16 6 C -0.18 -3.72 11.05 23.65 0.26 -3.46 16 7 C 0.02 0.35 12.03 66.89 0.80 1.16 16 8 O -0.12 -3.53 10.52 4.67 0.05 -3.48 16 9 C -0.51 -17.60 7.37 67.41 0.50 -17.11 16 10 S 2.73 106.78 5.58 -56.49 -0.32 106.47 16 11 O -0.96 -39.53 17.60 -128.00 -2.25 -41.78 16 12 O -0.93 -40.22 14.52 -118.64 -1.72 -41.94 16 13 N -1.00 -39.09 3.70 -505.98 -1.87 -40.96 16 14 C 0.12 4.36 6.99 86.73 0.61 4.97 16 15 C -0.12 -5.20 5.37 31.78 0.17 -5.03 16 16 C 0.24 11.10 0.87 -10.07 -0.01 11.10 16 17 O -0.59 -28.00 13.17 -148.98 -1.96 -29.96 16 18 C -0.56 -28.38 8.27 25.60 0.21 -28.17 16 19 H 0.06 2.96 7.79 -2.91 -0.02 2.94 16 20 C 0.04 1.87 5.29 84.65 0.45 2.32 16 21 N -0.90 -44.92 10.76 21.45 0.23 -44.69 16 22 Si 0.96 40.36 29.54 68.60 2.03 42.39 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 26 C 0.14 5.83 6.17 86.93 0.54 6.37 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.27 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.08 3.40 7.55 -2.39 -0.02 3.39 16 35 H 0.06 2.71 8.04 -2.39 -0.02 2.69 16 36 H 0.38 18.17 7.56 -74.06 -0.56 17.61 16 37 H 0.27 12.77 8.31 -92.70 -0.77 12.00 16 38 H 0.08 3.51 8.03 -2.39 -0.02 3.49 16 39 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -70.01 350.76 -0.34 -70.35 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.55 Total: 24.96 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.16 Total: -13.68 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.64 Total: -85.65 kcal Atomic # 8 Polarization: -138.71 SS G_CDS: -6.12 Total: -144.84 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Atomic # 16 Polarization: 106.78 SS G_CDS: -0.32 Total: 106.47 kcal Total: -70.01 -0.34 -70.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364884894.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.140 kcal (2) G-P(sol) polarization free energy of solvation -70.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds