Wall clock time and date at job start Wed Apr 1 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39724 * 125.77864 * 2 1 4 4 C 1.36170 * 107.85967 * 180.02562 * 3 2 1 5 5 N 1.39333 * 126.26193 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00638 * 0.03221 * 5 4 3 7 7 O 1.21551 * 119.99707 * 359.97438 * 6 5 4 8 8 C 1.48071 * 120.00689 * 179.97438 * 6 5 4 9 9 N 1.32837 * 119.57489 * 359.72738 * 8 6 5 10 10 C 1.31304 * 121.81059 * 179.75157 * 9 8 6 11 11 C 1.39926 * 120.74807 * 0.52232 * 10 9 8 12 12 C 1.43204 * 120.46261 * 179.76520 * 11 10 9 13 13 N 9.64874 * 170.63907 * 179.90962 * 3 1 2 14 14 C 1.39889 * 119.08292 * 359.74222 * 11 10 9 15 15 C 1.38553 * 118.34522 * 0.02562 * 14 11 10 16 16 Cl 1.73603 * 120.41304 * 179.97438 * 15 14 11 17 17 N 1.35814 * 107.46815 * 0.02562 * 4 3 2 18 18 C 1.46500 * 126.09283 * 180.02562 * 17 4 3 19 19 C 1.50697 * 109.47441 * 269.97872 * 18 17 4 20 20 H 1.08004 * 119.99544 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00524 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99743 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00330 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47040 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46833 * 119.99786 * 23 21 19 26 26 H 1.48493 * 109.47335 * 239.99974 * 23 21 19 27 27 N 1.30838 * 125.77744 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46903 * 269.99948 * 1 2 3 29 29 H 1.09001 * 109.46660 * 29.99629 * 1 2 3 30 30 H 1.08991 * 109.47221 * 149.99848 * 1 2 3 31 31 H 1.07995 * 126.06968 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99765 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.62693 * 180.26377 * 10 9 8 34 34 H 1.07998 * 120.82603 * 180.02562 * 14 11 10 35 35 H 1.08996 * 109.47305 * 29.98140 * 18 17 4 36 36 H 1.09010 * 109.46911 * 149.98131 * 18 17 4 37 37 H 0.97000 * 119.99649 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6195 0.7146 -0.0006 5 7 4.7493 1.5300 -0.0013 6 6 4.6129 2.8708 -0.0008 7 8 3.5040 3.3687 -0.0002 8 6 5.8135 3.7374 -0.0009 9 7 7.0212 3.1843 0.0039 10 6 8.1151 3.9106 -0.0009 11 6 8.0459 5.3081 -0.0004 12 6 9.2429 6.0943 -0.0005 13 7 10.1924 6.7178 -0.0025 14 6 6.7913 5.9268 -0.0002 15 6 5.6620 5.1240 0.0000 16 17 4.0783 5.8352 0.0009 17 7 3.6088 -0.6435 -0.0015 18 6 4.7858 -1.5158 -0.0018 19 6 5.1895 -1.8144 -1.4227 20 1 4.6258 -1.3959 -2.2435 21 6 6.2781 -2.6219 -1.6750 22 7 6.9642 -3.1319 -0.6755 23 14 6.7789 -2.9914 -3.4363 24 1 5.8520 -2.3019 -4.3694 25 1 8.1639 -2.5089 -3.6687 26 1 6.7191 -4.4564 -3.6710 27 7 2.2719 -1.0615 -0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9874 2.1598 0.0004 32 1 5.6343 1.1326 -0.0020 33 1 9.0792 3.4238 -0.0010 34 1 6.7051 7.0033 -0.0003 35 1 5.6076 -1.0174 0.5122 36 1 4.5477 -2.4475 0.5116 37 1 7.7303 -3.6997 -0.8531 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433192762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:58 Heat of formation + Delta-G solvation = 118.340773 kcal Electronic energy + Delta-G solvation = -26223.877873 eV Core-core repulsion = 22222.976844 eV Total energy + Delta-G solvation = -4000.901028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.38682 -40.61040 -38.99690 -37.18696 -36.93194 -34.87347 -33.82117 -33.34268 -32.09712 -31.99316 -29.20146 -28.41368 -26.18507 -25.97340 -24.40205 -22.97819 -22.09830 -19.91457 -19.84532 -19.66963 -17.83457 -17.60423 -16.82612 -16.37434 -15.82481 -15.77735 -15.46862 -14.84681 -14.80333 -14.33212 -14.11856 -14.06602 -13.96217 -13.57291 -13.51833 -13.05766 -12.90307 -12.77939 -12.52290 -12.40994 -12.06781 -11.80977 -11.70749 -11.49115 -11.06084 -10.90108 -10.63698 -10.49677 -10.39008 -10.33089 -9.85620 -9.78587 -9.56046 -9.50267 -8.70861 -7.92992 -7.49253 -6.31938 -4.40017 -0.46904 0.34669 1.50931 1.85568 2.09619 2.49289 2.54237 2.98170 3.09295 3.16341 3.24994 3.29661 3.32252 3.52139 3.60965 3.72138 3.95074 4.09581 4.25938 4.38639 4.52711 4.96956 5.01779 5.11994 5.33907 5.54268 5.61709 6.01755 6.12224 6.14811 6.21632 6.35350 6.59327 6.80014 6.84485 6.99233 7.04075 7.46617 7.53962 7.61191 7.78240 7.81826 8.16269 8.60213 8.70415 9.27542 10.75361 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.008476 B = 0.003923 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.510814 B = 7135.469923 C = 9901.039818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.288 4.288 4 C 0.297 3.703 5 N -0.614 5.614 6 C 0.566 3.434 7 O -0.481 6.481 8 C 0.128 3.872 9 N -0.434 5.434 10 C 0.160 3.840 11 C -0.046 4.046 12 C 0.255 3.745 13 N -0.390 5.390 14 C -0.025 4.025 15 C -0.042 4.042 16 Cl 0.004 6.996 17 N -0.343 5.343 18 C 0.256 3.744 19 C -0.539 4.539 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.280 5.280 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.427 0.573 33 H 0.185 0.815 34 H 0.164 0.836 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.876 17.859 2.921 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.320 4.320 4 C 0.075 3.925 5 N -0.261 5.261 6 C 0.350 3.650 7 O -0.353 6.353 8 C -0.012 4.012 9 N -0.144 5.144 10 C -0.003 4.003 11 C -0.052 4.052 12 C -0.062 4.062 13 N -0.064 5.064 14 C -0.054 4.054 15 C -0.073 4.073 16 Cl 0.033 6.967 17 N -0.129 5.129 18 C 0.138 3.862 19 C -0.578 4.578 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.105 5.105 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.265 0.735 33 H 0.202 0.798 34 H 0.182 0.818 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.018 16.852 2.978 17.113 hybrid contribution 0.668 0.973 -0.972 1.529 sum 0.686 17.824 2.006 17.950 Atomic orbital electron populations 1.20023 0.87554 1.02478 1.02057 1.22014 0.96546 0.90980 1.02009 1.21281 0.88956 1.00520 1.21262 1.17954 0.87638 0.83397 1.03489 1.42437 1.09211 1.04887 1.69552 1.17435 0.87461 0.81410 0.78729 1.90848 1.24216 1.73406 1.46802 1.21164 0.92541 0.90366 0.97161 1.67917 0.97228 1.38969 1.10272 1.23177 0.98014 0.88226 0.90918 1.17055 0.88044 0.93313 1.06825 1.25087 0.92775 0.93822 0.94504 1.81328 1.09918 1.07804 1.07382 1.21598 0.88732 1.01596 0.93477 1.21746 0.90179 0.92662 1.02663 1.98469 1.20140 1.82289 1.95795 1.49539 1.06515 1.01994 1.54837 1.19661 0.77798 0.89713 0.99010 1.21365 1.13355 1.31745 0.91306 0.91647 1.24914 0.95672 0.94886 0.98094 1.69927 1.19185 1.32589 1.30964 0.86320 0.78379 0.78389 0.83743 1.19570 1.20635 1.20580 1.77355 0.86138 1.21831 1.25221 0.91364 0.91108 0.91499 0.81946 0.73453 0.79849 0.81827 0.93634 0.92491 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.00 0.38 -0.51 16 2 C 0.05 0.96 7.20 -82.46 -0.59 0.36 16 3 C -0.29 -5.61 9.58 -39.77 -0.38 -5.99 16 4 C 0.30 6.07 7.68 -152.78 -1.17 4.89 16 5 N -0.61 -10.63 5.40 -12.14 -0.07 -10.69 16 6 C 0.57 8.56 7.77 -12.23 -0.09 8.47 16 7 O -0.48 -7.76 11.04 5.32 0.06 -7.71 16 8 C 0.13 1.50 6.75 -82.93 -0.56 0.94 16 9 N -0.43 -4.72 9.51 -9.46 -0.09 -4.81 16 10 C 0.16 1.22 10.91 -17.15 -0.19 1.03 16 11 C -0.05 -0.31 5.75 -106.72 -0.61 -0.93 16 12 C 0.25 1.96 15.36 -22.47 -0.35 1.62 16 13 N -0.39 -3.94 18.54 41.84 0.78 -3.17 16 14 C -0.03 -0.17 9.70 -38.85 -0.38 -0.54 16 15 C -0.04 -0.40 6.36 -39.00 -0.25 -0.65 16 16 Cl 0.00 0.04 26.00 -51.86 -1.35 -1.31 16 17 N -0.34 -7.87 3.62 -61.45 -0.22 -8.10 16 18 C 0.26 6.30 6.02 -5.20 -0.03 6.27 16 19 C -0.54 -14.32 9.39 -34.44 -0.32 -14.64 16 20 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -24.03 13.29 55.43 0.74 -23.30 16 23 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 N -0.28 -6.35 12.56 33.64 0.42 -5.93 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.16 2.98 5.83 -52.49 -0.31 2.67 16 32 H 0.43 7.23 7.31 -40.82 -0.30 6.94 16 33 H 0.18 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.16 0.63 8.06 -52.49 -0.42 0.21 16 35 H 0.05 1.09 7.52 -51.93 -0.39 0.70 16 36 H 0.06 1.51 8.14 -51.92 -0.42 1.09 16 37 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 354.65 15.07 5.34 5.34 Total: -1.00 -31.18 354.65 -7.14 -38.31 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -3.08 Total: 3.85 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.65 Total: 2.02 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 1.56 Total: -56.00 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.06 Total: -7.71 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.35 Total: -1.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.18 -7.14 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433192762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.652 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds