Wall clock time and date at job start Wed Apr 1 2020 03:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39724 * 125.77864 * 2 1 4 4 C 1.36170 * 107.85967 * 180.02562 * 3 2 1 5 5 N 1.39333 * 126.26193 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00638 * 0.03221 * 5 4 3 7 7 O 1.21551 * 119.99707 * 359.97438 * 6 5 4 8 8 C 1.48071 * 120.00689 * 179.97438 * 6 5 4 9 9 N 1.32837 * 119.57489 * 359.72738 * 8 6 5 10 10 C 1.31304 * 121.81059 * 179.75157 * 9 8 6 11 11 C 1.39926 * 120.74807 * 0.52232 * 10 9 8 12 12 C 1.43204 * 120.46261 * 179.76520 * 11 10 9 13 13 N 9.64874 * 170.63907 * 179.90962 * 3 1 2 14 14 C 1.39889 * 119.08292 * 359.74222 * 11 10 9 15 15 C 1.38553 * 118.34522 * 0.02562 * 14 11 10 16 16 Cl 1.73603 * 120.41304 * 179.97438 * 15 14 11 17 17 N 1.35814 * 107.46815 * 0.02562 * 4 3 2 18 18 C 1.46500 * 126.09283 * 180.02562 * 17 4 3 19 19 C 1.50697 * 109.47441 * 269.97872 * 18 17 4 20 20 H 1.08004 * 119.99544 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00524 * 180.02562 * 19 18 17 22 22 N 1.31519 * 119.99743 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00330 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47040 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46833 * 119.99786 * 23 21 19 26 26 H 1.48493 * 109.47335 * 239.99974 * 23 21 19 27 27 N 1.30838 * 125.77744 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46903 * 269.99948 * 1 2 3 29 29 H 1.09001 * 109.46660 * 29.99629 * 1 2 3 30 30 H 1.08991 * 109.47221 * 149.99848 * 1 2 3 31 31 H 1.07995 * 126.06968 * 0.02562 * 3 2 1 32 32 H 0.97004 * 119.99765 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.62693 * 180.26377 * 10 9 8 34 34 H 1.07998 * 120.82603 * 180.02562 * 14 11 10 35 35 H 1.08996 * 109.47305 * 29.98140 * 18 17 4 36 36 H 1.09010 * 109.46911 * 149.98131 * 18 17 4 37 37 H 0.97000 * 119.99649 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6195 0.7146 -0.0006 5 7 4.7493 1.5300 -0.0013 6 6 4.6129 2.8708 -0.0008 7 8 3.5040 3.3687 -0.0002 8 6 5.8135 3.7374 -0.0009 9 7 7.0212 3.1843 0.0039 10 6 8.1151 3.9106 -0.0009 11 6 8.0459 5.3081 -0.0004 12 6 9.2429 6.0943 -0.0005 13 7 10.1924 6.7178 -0.0025 14 6 6.7913 5.9268 -0.0002 15 6 5.6620 5.1240 0.0000 16 17 4.0783 5.8352 0.0009 17 7 3.6088 -0.6435 -0.0015 18 6 4.7858 -1.5158 -0.0018 19 6 5.1895 -1.8144 -1.4227 20 1 4.6258 -1.3959 -2.2435 21 6 6.2781 -2.6219 -1.6750 22 7 6.9642 -3.1319 -0.6755 23 14 6.7789 -2.9914 -3.4363 24 1 5.8520 -2.3019 -4.3694 25 1 8.1639 -2.5089 -3.6687 26 1 6.7191 -4.4564 -3.6710 27 7 2.2719 -1.0615 -0.0005 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9874 2.1598 0.0004 32 1 5.6343 1.1326 -0.0020 33 1 9.0792 3.4238 -0.0010 34 1 6.7051 7.0033 -0.0003 35 1 5.6076 -1.0174 0.5122 36 1 4.5477 -2.4475 0.5116 37 1 7.7303 -3.6997 -0.8531 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433192762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:40:58 Heat of formation + Delta-G solvation = 99.520527 kcal Electronic energy + Delta-G solvation = -26224.693980 eV Core-core repulsion = 22222.976844 eV Total energy + Delta-G solvation = -4001.717135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.53216 -41.79924 -40.20501 -37.93759 -37.69780 -36.28495 -35.61476 -34.15771 -33.74065 -32.82228 -30.75264 -29.89709 -27.77474 -27.06032 -25.11193 -24.73016 -23.36800 -21.31653 -21.08000 -20.53266 -19.05033 -18.82443 -18.50216 -17.80806 -16.92878 -16.82904 -16.50663 -16.32711 -15.99998 -15.75200 -15.35110 -15.06478 -14.65642 -14.52259 -14.43497 -14.37747 -14.28320 -14.01429 -13.75430 -13.54530 -13.36116 -13.18308 -13.08556 -12.87586 -12.70792 -12.50728 -12.28053 -11.92446 -11.65453 -11.56086 -11.23565 -11.11791 -10.73132 -10.64455 -10.32631 -9.59753 -9.04871 -8.33312 -6.50244 -1.24029 -0.29247 0.73926 0.76358 1.21892 1.36839 1.38304 1.41356 1.43890 1.52048 1.86195 2.09638 2.11871 2.35183 2.40332 2.54486 2.74774 2.97271 3.24423 3.38747 3.54594 3.86313 3.89156 4.17396 4.30821 4.56901 4.65122 4.74731 4.83995 4.88172 4.93330 4.94709 4.99493 5.24826 5.26542 5.54287 5.80124 5.98931 6.06676 6.14058 6.21958 6.36196 6.58892 6.81843 7.04443 7.21563 8.73489 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.008476 B = 0.003923 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.510814 B = 7135.469923 C = 9901.039818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.057 3.943 3 C -0.296 4.296 4 C 0.296 3.704 5 N -0.621 5.621 6 C 0.566 3.434 7 O -0.493 6.493 8 C 0.109 3.891 9 N -0.458 5.458 10 C 0.167 3.833 11 C -0.026 4.026 12 C 0.284 3.716 13 N -0.424 5.424 14 C -0.004 4.004 15 C -0.041 4.041 16 Cl -0.005 7.005 17 N -0.369 5.369 18 C 0.273 3.727 19 C -0.554 4.554 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.967 3.033 24 H -0.277 1.277 25 H -0.265 1.265 26 H -0.276 1.276 27 N -0.327 5.327 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.176 0.824 32 H 0.426 0.574 33 H 0.210 0.790 34 H 0.198 0.802 35 H 0.046 0.954 36 H 0.028 0.972 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.282 19.844 2.278 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.108 4.108 3 C -0.328 4.328 4 C 0.074 3.926 5 N -0.268 5.268 6 C 0.352 3.648 7 O -0.365 6.365 8 C -0.029 4.029 9 N -0.169 5.169 10 C 0.003 3.997 11 C -0.032 4.032 12 C -0.033 4.033 13 N -0.099 5.099 14 C -0.032 4.032 15 C -0.071 4.071 16 Cl 0.025 6.975 17 N -0.155 5.155 18 C 0.155 3.845 19 C -0.592 4.592 20 H 0.065 0.935 21 C -0.172 4.172 22 N -0.551 5.551 23 Si 0.792 3.208 24 H -0.201 1.201 25 H -0.190 1.190 26 H -0.201 1.201 27 N -0.152 5.152 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.193 0.807 32 H 0.264 0.736 33 H 0.227 0.773 34 H 0.215 0.785 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.609 18.866 2.345 19.021 hybrid contribution 0.495 0.475 -0.727 0.999 sum 1.104 19.341 1.618 19.440 Atomic orbital electron populations 1.20227 0.83874 1.03909 1.03880 1.22884 0.98747 0.90046 0.99102 1.21520 0.88627 1.01054 1.21589 1.18353 0.89159 0.82787 1.02284 1.42619 1.08275 1.05535 1.70385 1.18009 0.88708 0.80717 0.77387 1.90812 1.25251 1.73391 1.47044 1.20682 0.91723 0.90505 0.99989 1.67860 0.97589 1.39990 1.11413 1.23586 0.97969 0.88655 0.89467 1.16934 0.87768 0.92789 1.05736 1.24884 0.92154 0.92874 0.93352 1.81384 1.10982 1.09012 1.08556 1.21888 0.87369 1.02917 0.91002 1.21742 0.90616 0.91850 1.02937 1.98469 1.21029 1.82176 1.95848 1.49324 1.06287 1.02762 1.57100 1.19206 0.78629 0.88921 0.97790 1.21425 1.13753 1.32441 0.91605 0.93484 1.25645 0.95362 0.94338 1.01901 1.69999 1.19526 1.32797 1.32766 0.85369 0.78440 0.78156 0.78880 1.20136 1.18972 1.20116 1.77302 0.86344 1.23730 1.27840 0.89210 0.88651 0.91046 0.80728 0.73577 0.77335 0.78485 0.93625 0.95440 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.44 71.24 0.74 -0.88 16 2 C 0.06 2.23 7.20 43.07 0.31 2.54 16 3 C -0.30 -11.57 9.58 22.15 0.21 -11.36 16 4 C 0.30 12.43 7.68 131.21 1.01 13.44 16 5 N -0.62 -22.08 5.40 -310.60 -1.68 -23.76 16 6 C 0.57 17.17 7.77 86.85 0.67 17.84 16 7 O -0.49 -15.79 11.04 -3.88 -0.04 -15.83 16 8 C 0.11 2.48 6.75 41.91 0.28 2.76 16 9 N -0.46 -9.47 9.51 -183.84 -1.75 -11.22 16 10 C 0.17 2.15 10.91 85.18 0.93 3.08 16 11 C -0.03 -0.27 5.75 -21.22 -0.12 -0.39 16 12 C 0.28 3.52 15.36 88.33 1.36 4.87 16 13 N -0.42 -7.59 18.54 19.01 0.35 -7.24 16 14 C 0.00 -0.03 9.70 22.75 0.22 0.19 16 15 C -0.04 -0.69 6.36 22.65 0.14 -0.55 16 16 Cl 0.00 -0.09 26.00 -2.72 -0.07 -0.16 16 17 N -0.37 -17.65 3.62 -348.34 -1.26 -18.92 16 18 C 0.27 14.15 6.02 85.63 0.52 14.67 16 19 C -0.55 -30.40 9.39 25.60 0.24 -30.16 16 20 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 21 C 0.03 1.55 5.46 84.65 0.46 2.02 16 22 N -0.91 -49.91 13.29 21.45 0.28 -49.63 16 23 Si 0.97 42.12 29.54 68.60 2.03 44.14 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 N -0.33 -15.31 12.56 -47.48 -0.60 -15.91 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.18 6.32 5.83 -2.91 -0.02 6.31 16 32 H 0.43 15.02 7.31 -92.71 -0.68 14.34 16 33 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.05 2.31 7.52 -2.39 -0.02 2.29 16 36 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -69.45 354.65 4.73 -64.72 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.49 Total: 15.73 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 6.98 Total: 18.07 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -4.65 Total: -126.67 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.04 Total: -15.83 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.07 Total: -0.16 kcal Total: -69.45 4.73 -64.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433192762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.240 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds