Wall clock time and date at job start Wed Apr 1 2020 03:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35238 * 107.86764 * 179.87611 * 11 10 9 13 13 C 1.40428 * 107.86466 * 0.38755 * 12 11 10 14 14 N 1.40059 * 125.97818 * 179.76157 * 13 12 11 15 15 C 1.34777 * 119.99889 * 0.02665 * 14 13 12 16 16 O 1.21795 * 119.99788 * 359.97438 * 15 14 13 17 17 C 1.46216 * 120.00084 * 180.02562 * 15 14 13 18 18 N 1.32520 * 125.57185 * 359.68720 * 17 15 14 19 19 C 1.32018 * 109.87780 * 179.85968 * 18 17 15 20 20 C 1.39400 * 107.94452 * 0.40320 * 19 18 17 21 21 C 1.40360 * 133.40333 * 179.79213 * 20 19 18 22 22 C 1.36478 * 119.17903 * 179.97438 * 21 20 19 23 23 Cl 1.73599 * 120.22192 * 179.97438 * 22 21 20 24 24 C 1.40448 * 119.55891 * 0.02562 * 22 21 20 25 25 C 1.35124 * 120.37511 * 0.02562 * 24 22 21 26 26 N 1.36190 * 120.62181 * 0.02562 * 25 24 22 27 27 N 1.31236 * 108.04763 * 359.75884 * 13 12 11 28 28 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 30 30 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 31 31 H 1.08000 * 126.06378 * 359.97438 * 11 10 9 32 32 H 1.07996 * 126.06708 * 180.13270 * 12 11 10 33 33 H 0.97000 * 120.00500 * 180.02562 * 14 13 12 34 34 H 1.07999 * 126.02752 * 180.16026 * 19 18 17 35 35 H 1.08001 * 120.40831 * 359.93805 * 21 20 19 36 36 H 1.08001 * 119.81230 * 179.97438 * 24 22 21 37 37 H 1.08007 * 119.68734 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0533 -4.4047 -0.5784 13 6 4.2965 -4.6709 0.5742 14 7 4.2281 -5.8965 1.2486 15 6 4.9315 -6.9540 0.7977 16 8 5.6262 -6.8440 -0.1966 17 6 4.8596 -8.2337 1.5014 18 7 4.1462 -8.4748 2.5918 19 6 4.3052 -9.7315 2.9635 20 6 5.1811 -10.3378 2.0644 21 6 5.7116 -11.6330 1.9593 22 6 6.5673 -11.9205 0.9357 23 17 7.2399 -13.5133 0.7802 24 6 6.9011 -10.9188 0.0095 25 6 6.3807 -9.6775 0.1285 26 7 5.5265 -9.3779 1.1460 27 7 3.6647 -3.5705 0.9089 28 1 -0.4850 0.8400 0.0004 29 1 3.8711 -0.6780 -0.9023 30 1 3.8785 -0.6824 0.8776 31 1 5.2836 -2.6015 -1.7661 32 1 5.6845 -5.1080 -1.1011 33 1 3.6745 -5.9842 2.0403 34 1 3.8417 -10.2053 3.8163 35 1 5.4463 -12.3926 2.6798 36 1 7.5782 -11.1417 -0.8018 37 1 6.6452 -8.9154 -0.5898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435241290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:15 Heat of formation + Delta-G solvation = 142.841801 kcal Electronic energy + Delta-G solvation = -25586.702683 eV Core-core repulsion = 21586.864099 eV Total energy + Delta-G solvation = -3999.838584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.39535 -40.78629 -39.26499 -38.31116 -36.93348 -35.00070 -33.70995 -33.32730 -31.71370 -31.23260 -29.51748 -28.98004 -27.16538 -24.85653 -24.39156 -22.75966 -22.57378 -21.69507 -20.42081 -19.74247 -18.39760 -17.63302 -17.06146 -17.04005 -16.69524 -16.57800 -16.27403 -15.64285 -15.17149 -15.09588 -14.70727 -14.37872 -14.05756 -13.69480 -13.42787 -13.41195 -13.14338 -12.75619 -12.59061 -12.42009 -12.17377 -12.09675 -11.67450 -11.22589 -10.92205 -10.87834 -10.86962 -10.59054 -10.30714 -10.05126 -9.90132 -9.89522 -9.55014 -8.77235 -8.29560 -8.06378 -7.58314 -6.23665 -4.26375 0.07252 0.24697 1.38661 1.71543 1.79381 2.62252 2.70351 2.74583 3.02633 3.15994 3.20629 3.23984 3.60033 3.66183 3.85975 4.00103 4.15182 4.17481 4.22356 4.39263 4.70121 4.89239 5.03742 5.07708 5.21981 5.32393 5.37214 5.65098 5.79876 5.94260 6.06992 6.31503 6.38440 6.39435 6.45075 6.60847 7.11870 7.22895 7.24707 7.49073 7.76000 7.99451 8.31745 8.49241 8.86041 9.30798 10.88947 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.034317 B = 0.001875 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.725748 B =14933.086157 C =15492.137021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.265 1.265 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.316 5.316 11 C 0.053 3.947 12 C -0.283 4.283 13 C 0.260 3.740 14 N -0.603 5.603 15 C 0.618 3.382 16 O -0.524 6.524 17 C 0.103 3.897 18 N -0.398 5.398 19 C 0.006 3.994 20 C 0.024 3.976 21 C -0.066 4.066 22 C -0.031 4.031 23 Cl -0.047 7.047 24 C -0.130 4.130 25 C 0.085 3.915 26 N -0.324 5.324 27 N -0.289 5.289 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.424 0.576 34 H 0.195 0.805 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.770 -25.431 2.133 29.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.098 5.098 11 C -0.096 4.096 12 C -0.314 4.314 13 C 0.006 3.994 14 N -0.249 5.249 15 C 0.403 3.597 16 O -0.399 6.399 17 C -0.146 4.146 18 N -0.114 5.114 19 C -0.156 4.156 20 C -0.087 4.087 21 C -0.086 4.086 22 C -0.061 4.061 23 Cl -0.018 7.018 24 C -0.151 4.151 25 C -0.037 4.037 26 N 0.007 4.993 27 N -0.119 5.119 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.188 0.812 32 H 0.180 0.820 33 H 0.261 0.739 34 H 0.212 0.788 35 H 0.180 0.820 36 H 0.181 0.819 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 14.830 -23.864 2.512 28.209 hybrid contribution 1.049 -0.294 -0.556 1.223 sum 15.879 -24.157 1.956 28.975 Atomic orbital electron populations 1.69873 1.06149 1.27310 1.49029 1.24835 0.94880 0.98798 0.94249 0.86888 0.80202 0.83820 0.79014 1.19685 1.18975 1.20589 1.21105 0.87722 0.95765 1.52788 0.89583 1.20090 0.97543 0.72821 0.98312 1.48678 1.32583 1.10203 1.18299 1.22564 0.95943 0.94603 0.96524 1.21527 1.11542 0.96884 1.01422 1.18969 0.99428 0.86219 0.94758 1.41837 1.46239 1.06582 1.30238 1.15802 0.80094 0.80744 0.83069 1.90781 1.40762 1.83209 1.25180 1.22085 1.04017 0.89089 0.99435 1.70015 1.16862 1.16928 1.07609 1.22821 1.01389 0.89751 1.01667 1.19799 1.03841 0.90032 0.95057 1.20397 0.95944 0.93983 0.98310 1.20740 0.99376 0.88194 0.97761 1.98405 1.83952 1.21952 1.97459 1.20823 1.02766 0.90504 1.01053 1.22094 0.91614 0.98653 0.91338 1.42448 1.28187 1.10132 1.18533 1.77455 1.23185 0.95396 1.15891 0.92157 0.92797 0.94333 0.81220 0.82041 0.73866 0.78801 0.81991 0.81862 0.79279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.96 55.43 0.77 -25.75 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 20.05 27.47 -169.99 -4.67 15.38 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.26 -5.62 6.54 56.52 0.37 -5.25 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.05 9.79 -34.44 -0.34 -15.39 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 C 0.23 5.42 5.33 -5.20 -0.03 5.39 16 10 N -0.32 -7.06 3.67 -62.56 -0.23 -7.29 16 11 C 0.05 0.99 11.43 -17.24 -0.20 0.80 16 12 C -0.28 -5.31 9.60 -39.83 -0.38 -5.69 16 13 C 0.26 5.18 8.10 -154.47 -1.25 3.93 16 14 N -0.60 -10.02 5.44 -12.44 -0.07 -10.08 16 15 C 0.62 9.44 7.74 -13.06 -0.10 9.34 16 16 O -0.52 -8.46 12.45 5.10 0.06 -8.39 16 17 C 0.10 1.35 7.82 -153.85 -1.20 0.15 16 18 N -0.40 -4.92 10.79 -10.61 -0.11 -5.04 16 19 C 0.01 0.06 12.00 -17.04 -0.20 -0.15 16 20 C 0.02 0.22 6.79 -84.20 -0.57 -0.35 16 21 C -0.07 -0.43 9.88 -39.42 -0.39 -0.82 16 22 C -0.03 -0.20 6.33 -39.38 -0.25 -0.45 16 23 Cl -0.05 -0.27 28.97 -51.86 -1.50 -1.77 16 24 C -0.13 -0.84 9.79 -39.86 -0.39 -1.23 16 25 C 0.09 0.74 10.52 -16.72 -0.18 0.56 16 26 N -0.32 -3.50 2.96 -58.90 -0.17 -3.67 16 27 N -0.29 -6.62 12.42 31.42 0.39 -6.23 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.05 1.15 7.12 -51.93 -0.37 0.78 16 30 H 0.04 0.89 7.57 -51.93 -0.39 0.50 16 31 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.16 2.84 5.90 -52.49 -0.31 2.53 16 33 H 0.42 6.47 8.46 -40.82 -0.35 6.13 16 34 H 0.20 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 36 H 0.16 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.19 1.59 6.77 -52.48 -0.36 1.23 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -33.90 343.91 -8.98 -42.88 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -3.05 Total: 6.67 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -5.58 Total: -1.88 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: 0.58 Total: -58.07 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.06 Total: -8.39 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.38 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.50 Total: -1.77 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.90 -8.98 -42.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435241290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.721 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds