Wall clock time and date at job start Wed Apr 1 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97661 * 124.71645 * 10 9 7 12 12 C 1.35238 * 107.86764 * 179.87611 * 11 10 9 13 13 C 1.40428 * 107.86466 * 0.38755 * 12 11 10 14 14 N 1.40059 * 125.97818 * 179.76157 * 13 12 11 15 15 C 1.34777 * 119.99889 * 0.02665 * 14 13 12 16 16 O 1.21795 * 119.99788 * 359.97438 * 15 14 13 17 17 C 1.46216 * 120.00084 * 180.02562 * 15 14 13 18 18 N 1.32520 * 125.57185 * 359.68720 * 17 15 14 19 19 C 1.32018 * 109.87780 * 179.85968 * 18 17 15 20 20 C 1.39400 * 107.94452 * 0.40320 * 19 18 17 21 21 C 1.40360 * 133.40333 * 179.79213 * 20 19 18 22 22 C 1.36478 * 119.17903 * 179.97438 * 21 20 19 23 23 Cl 1.73599 * 120.22192 * 179.97438 * 22 21 20 24 24 C 1.40448 * 119.55891 * 0.02562 * 22 21 20 25 25 C 1.35124 * 120.37511 * 0.02562 * 24 22 21 26 26 N 1.36190 * 120.62181 * 0.02562 * 25 24 22 27 27 N 1.31236 * 108.04763 * 359.75884 * 13 12 11 28 28 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 30 30 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 31 31 H 1.08000 * 126.06378 * 359.97438 * 11 10 9 32 32 H 1.07996 * 126.06708 * 180.13270 * 12 11 10 33 33 H 0.97000 * 120.00500 * 180.02562 * 14 13 12 34 34 H 1.07999 * 126.02752 * 180.16026 * 19 18 17 35 35 H 1.08001 * 120.40831 * 359.93805 * 21 20 19 36 36 H 1.08001 * 119.81230 * 179.97438 * 24 22 21 37 37 H 1.08007 * 119.68734 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9210 12 6 5.0533 -4.4047 -0.5784 13 6 4.2965 -4.6709 0.5742 14 7 4.2281 -5.8965 1.2486 15 6 4.9315 -6.9540 0.7977 16 8 5.6262 -6.8440 -0.1966 17 6 4.8596 -8.2337 1.5014 18 7 4.1462 -8.4748 2.5918 19 6 4.3052 -9.7315 2.9635 20 6 5.1811 -10.3378 2.0644 21 6 5.7116 -11.6330 1.9593 22 6 6.5673 -11.9205 0.9357 23 17 7.2399 -13.5133 0.7802 24 6 6.9011 -10.9188 0.0095 25 6 6.3807 -9.6775 0.1285 26 7 5.5265 -9.3779 1.1460 27 7 3.6647 -3.5705 0.9089 28 1 -0.4850 0.8400 0.0004 29 1 3.8711 -0.6780 -0.9023 30 1 3.8785 -0.6824 0.8776 31 1 5.2836 -2.6015 -1.7661 32 1 5.6845 -5.1080 -1.1011 33 1 3.6745 -5.9842 2.0403 34 1 3.8417 -10.2053 3.8163 35 1 5.4463 -12.3926 2.6798 36 1 7.5782 -11.1417 -0.8018 37 1 6.6452 -8.9154 -0.5898 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435241290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:14 Heat of formation + Delta-G solvation = 121.242523 kcal Electronic energy + Delta-G solvation = -25587.639298 eV Core-core repulsion = 21586.864099 eV Total energy + Delta-G solvation = -4000.775199 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.15275 -42.26734 -40.50602 -38.98427 -37.50922 -36.37711 -35.24254 -34.39711 -33.24002 -32.22043 -31.05171 -29.96479 -28.80966 -25.85472 -25.15622 -24.29240 -23.44905 -22.91107 -21.87129 -21.08668 -19.39083 -19.11021 -18.37158 -18.08453 -17.80294 -17.54829 -17.12099 -16.94398 -16.46618 -16.10418 -15.91157 -15.69286 -15.27774 -14.87234 -14.79282 -14.45120 -14.09818 -13.96854 -13.89891 -13.80602 -13.31955 -13.01348 -12.85425 -12.66700 -12.23002 -12.18870 -11.82710 -11.74638 -11.66415 -11.53461 -11.46757 -11.26175 -10.87520 -10.57967 -9.83763 -9.22652 -8.71945 -8.37051 -6.47792 -0.58483 -0.47730 0.76594 0.80691 0.84947 1.22700 1.36097 1.40418 1.48158 1.56026 1.85012 2.08437 2.28623 2.29779 2.33701 2.95472 3.01912 3.24034 3.45738 3.51110 3.74537 3.88871 4.09236 4.17215 4.25437 4.49557 4.57996 4.63334 4.69613 4.78437 4.84286 4.85977 5.02616 5.17495 5.24192 5.31068 5.65830 5.77791 5.98461 6.00542 6.38855 6.43462 6.58225 6.77527 6.95871 7.15003 8.80068 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.034317 B = 0.001875 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.725748 B =14933.086157 C =15492.137021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.227 1.227 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.025 0.975 9 C 0.238 3.762 10 N -0.341 5.341 11 C 0.065 3.935 12 C -0.290 4.290 13 C 0.264 3.736 14 N -0.608 5.608 15 C 0.621 3.379 16 O -0.539 6.539 17 C 0.054 3.946 18 N -0.419 5.419 19 C 0.006 3.994 20 C 0.029 3.971 21 C -0.056 4.056 22 C -0.032 4.032 23 Cl -0.032 7.032 24 C -0.106 4.106 25 C 0.056 3.944 26 N -0.321 5.321 27 N -0.345 5.345 28 H 0.272 0.728 29 H 0.087 0.913 30 H 0.046 0.954 31 H 0.216 0.784 32 H 0.174 0.826 33 H 0.426 0.574 34 H 0.230 0.770 35 H 0.196 0.804 36 H 0.192 0.808 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.688 -26.968 1.759 32.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.150 1.150 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.043 0.957 9 C 0.119 3.881 10 N -0.123 5.123 11 C -0.083 4.083 12 C -0.321 4.321 13 C 0.010 3.990 14 N -0.255 5.255 15 C 0.408 3.592 16 O -0.416 6.416 17 C -0.191 4.191 18 N -0.136 5.136 19 C -0.158 4.158 20 C -0.084 4.084 21 C -0.077 4.077 22 C -0.063 4.063 23 Cl -0.003 7.003 24 C -0.126 4.126 25 C -0.067 4.067 26 N 0.010 4.990 27 N -0.176 5.176 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.232 0.768 32 H 0.192 0.808 33 H 0.264 0.736 34 H 0.246 0.754 35 H 0.213 0.787 36 H 0.209 0.791 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 17.780 -25.422 2.116 31.094 hybrid contribution 0.195 -0.276 -0.428 0.545 sum 17.974 -25.698 1.688 31.405 Atomic orbital electron populations 1.70057 1.08631 1.28812 1.50626 1.25955 0.95802 1.03637 0.93205 0.85595 0.79946 0.77083 0.79593 1.19153 1.14968 1.20354 1.21239 0.90574 0.93713 1.53104 0.95686 1.19942 0.94115 0.74208 0.99873 1.48564 1.34192 1.09967 1.19553 1.23306 0.94134 0.94527 0.96343 1.21774 1.11738 0.97396 1.01205 1.19331 0.98212 0.86543 0.94914 1.41956 1.47010 1.06098 1.30429 1.16077 0.79145 0.81121 0.82864 1.90731 1.41309 1.83662 1.25870 1.21411 1.07465 0.89073 1.01121 1.69954 1.17250 1.18670 1.07726 1.23516 1.01093 0.88764 1.02410 1.20253 1.03277 0.90536 0.94291 1.20783 0.94873 0.93324 0.98698 1.20891 0.99051 0.88788 0.97522 1.98423 1.83662 1.20822 1.97382 1.21186 1.01214 0.89273 1.00963 1.22266 0.92883 0.99760 0.91766 1.42536 1.27759 1.09757 1.18966 1.77361 1.25595 0.96769 1.17875 0.91889 0.89518 0.93656 0.76757 0.80846 0.73633 0.75358 0.78721 0.79102 0.79721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 2 C 0.01 0.73 5.47 84.65 0.46 1.19 16 3 Si 0.96 40.86 27.47 68.60 1.88 42.74 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.23 -8.27 6.54 99.48 0.65 -7.62 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.97 9.79 25.60 0.25 -31.72 16 8 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 9 C 0.24 11.04 5.33 85.63 0.46 11.50 16 10 N -0.34 -15.39 3.67 -351.85 -1.29 -16.68 16 11 C 0.06 2.36 11.43 83.52 0.95 3.32 16 12 C -0.29 -10.95 9.60 22.11 0.21 -10.74 16 13 C 0.26 11.00 8.10 133.36 1.08 12.08 16 14 N -0.61 -21.51 5.44 -311.45 -1.69 -23.20 16 15 C 0.62 19.92 7.74 86.32 0.67 20.59 16 16 O -0.54 -17.99 12.45 -4.65 -0.06 -18.05 16 17 C 0.05 1.47 7.82 135.52 1.06 2.53 16 18 N -0.42 -10.56 10.79 -187.49 -2.02 -12.58 16 19 C 0.01 0.11 12.00 84.94 1.02 1.13 16 20 C 0.03 0.47 6.79 39.09 0.27 0.74 16 21 C -0.06 -0.55 9.88 22.38 0.22 -0.33 16 22 C -0.03 -0.31 6.33 22.40 0.14 -0.17 16 23 Cl -0.03 -0.26 28.97 -2.72 -0.08 -0.34 16 24 C -0.11 -1.10 9.79 22.09 0.22 -0.88 16 25 C 0.06 0.92 10.52 83.30 0.88 1.79 16 26 N -0.32 -6.80 2.96 -340.25 -1.01 -7.81 16 27 N -0.35 -16.61 12.42 -54.49 -0.68 -17.29 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.09 3.44 7.12 -2.39 -0.02 3.43 16 30 H 0.05 2.03 7.57 -2.39 -0.02 2.01 16 31 H 0.22 5.54 8.06 -2.91 -0.02 5.52 16 32 H 0.17 6.07 5.90 -2.91 -0.02 6.05 16 33 H 0.43 14.19 8.46 -92.71 -0.78 13.41 16 34 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.19 3.13 6.77 -2.91 -0.02 3.11 16 Total: -1.00 -79.83 343.91 3.56 -76.27 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.32 Total: 24.28 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 7.89 Total: 11.04 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -6.39 Total: -135.93 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.06 Total: -18.05 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 1.88 Total: 42.74 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -79.83 3.56 -76.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435241290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.514 kcal (2) G-P(sol) polarization free energy of solvation -79.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds