Wall clock time and date at job start Wed Apr 1 2020 03:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38301 * 120.06995 * 0.57427 * 12 11 10 14 14 C 1.50698 * 119.92966 * 179.70327 * 13 12 11 15 15 N 1.46508 * 109.46930 * 269.97659 * 14 13 12 16 16 C 1.37267 * 119.99865 * 179.97438 * 15 14 13 17 17 N 1.33539 * 120.40496 * 0.02562 * 16 15 14 18 18 C 1.31025 * 121.94427 * 179.97438 * 17 16 15 19 19 Cl 1.73599 * 118.84329 * 179.97438 * 18 17 16 20 20 N 1.34492 * 122.31603 * 0.03430 * 18 17 16 21 21 H 0.96996 * 120.13369 * 179.97438 * 20 18 17 22 22 C 1.37675 * 119.74393 * 359.96539 * 20 18 17 23 23 N 1.32460 * 135.08134 * 179.97438 * 22 20 18 24 24 C 1.32821 * 108.71440 * 180.02562 * 23 22 20 25 25 N 1.31605 * 110.16433 * 359.97438 * 24 23 22 26 26 C 1.34334 * 108.19165 * 359.76314 * 25 24 23 27 27 C 1.38297 * 120.13831 * 359.68148 * 13 12 11 28 28 C 1.38101 * 120.07230 * 0.04164 * 27 13 12 29 29 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 32 32 H 1.09003 * 109.47622 * 29.97563 * 14 13 12 33 33 H 1.09004 * 109.47221 * 149.98114 * 14 13 12 34 34 H 0.96994 * 120.00085 * 0.02562 * 15 14 13 35 35 H 1.07996 * 124.91683 * 179.97438 * 24 23 22 36 36 H 1.07999 * 119.96698 * 180.02562 * 27 13 12 37 37 H 1.07992 * 120.03608 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5686 -5.8202 -0.3255 14 6 4.3848 -7.0815 -0.4440 15 7 4.6432 -7.6233 0.8925 16 6 5.3726 -8.7772 1.0360 17 7 5.8509 -9.4123 -0.0369 18 6 6.5510 -10.5152 0.0652 19 17 7.1331 -11.2746 -1.3833 20 7 6.8334 -11.0802 1.2525 21 1 7.3542 -11.8976 1.2912 22 6 6.3805 -10.4940 2.4129 23 7 6.4736 -10.7749 3.7040 24 6 5.8283 -9.8393 4.3914 25 7 5.3134 -8.9480 3.5714 26 6 5.6309 -9.3014 2.3148 27 6 4.2024 -4.5970 -0.2043 28 6 3.4573 -3.4394 -0.0951 29 1 -0.4850 0.8400 0.0004 30 1 0.3579 -4.7892 -0.2301 31 1 1.6954 -6.8451 -0.4339 32 1 3.8358 -7.8156 -1.0337 33 1 5.3321 -6.8566 -0.9342 34 1 4.2983 -7.1670 1.6758 35 1 5.7392 -9.8138 5.4673 36 1 5.2812 -4.5470 -0.1947 37 1 3.9527 -2.4846 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458157604.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:09 Heat of formation + Delta-G solvation = 111.103093 kcal Electronic energy + Delta-G solvation = -25450.516517 eV Core-core repulsion = 21449.301640 eV Total energy + Delta-G solvation = -4001.214878 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.073 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.53395 -39.78954 -39.31925 -38.15727 -37.51894 -36.45281 -34.02516 -32.46150 -31.21590 -30.52257 -30.34816 -29.05537 -26.08477 -25.04962 -24.77412 -23.22033 -22.16219 -21.65708 -20.82684 -19.13788 -18.62192 -18.16011 -17.74696 -17.23508 -16.72426 -16.59924 -15.44783 -15.17150 -15.01970 -14.63574 -14.27586 -14.17933 -14.03702 -13.93403 -13.74066 -13.50821 -12.88056 -12.64002 -12.52549 -12.31356 -12.06789 -11.73721 -11.50524 -11.19373 -11.04417 -10.89986 -10.81422 -10.57181 -10.54864 -9.87320 -9.50757 -9.50221 -9.14902 -8.97625 -8.38374 -7.99828 -7.44365 -6.59062 -4.17945 -0.24315 0.10655 1.19837 1.85352 2.04687 2.05131 2.77914 3.06114 3.07190 3.09986 3.16246 3.47667 3.75648 3.85700 3.97008 4.38649 4.46827 4.73098 4.91364 4.95930 5.10153 5.19375 5.22242 5.52189 5.57567 5.66441 5.82994 6.03356 6.15214 6.23665 6.43782 6.50250 6.58718 6.70697 6.86608 6.93547 7.04031 7.06681 7.15385 7.27202 7.30416 7.61563 7.85088 8.28771 8.85753 9.52232 10.57963 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.017717 B = 0.002062 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.000147 B =13576.484103 C =14338.125836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.094 0.906 9 O -0.169 6.169 10 C 0.164 3.836 11 C -0.195 4.195 12 C -0.049 4.049 13 C -0.229 4.229 14 C 0.170 3.830 15 N -0.640 5.640 16 C 0.542 3.458 17 N -0.548 5.548 18 C 0.466 3.534 19 Cl 0.059 6.941 20 N -0.531 5.531 21 H 0.426 0.574 22 C 0.218 3.782 23 N -0.537 5.537 24 C 0.194 3.806 25 N -0.494 5.494 26 C -0.116 4.116 27 C -0.045 4.045 28 C -0.237 4.237 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.431 0.569 35 H 0.200 0.800 36 H 0.109 0.891 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.900 -20.902 -2.938 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.108 3.892 11 C -0.214 4.214 12 C -0.068 4.068 13 C -0.230 4.230 14 C 0.048 3.952 15 N -0.259 5.259 16 C 0.295 3.705 17 N -0.283 5.283 18 C 0.172 3.828 19 Cl 0.087 6.913 20 N -0.145 5.145 21 H 0.265 0.735 22 C -0.034 4.034 23 N -0.261 5.261 24 C -0.098 4.098 25 N -0.214 5.214 26 C -0.256 4.256 27 C -0.064 4.064 28 C -0.257 4.257 29 H 0.083 0.917 30 H 0.138 0.862 31 H 0.131 0.869 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.272 0.728 35 H 0.217 0.783 36 H 0.127 0.873 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.059 -20.040 -3.186 24.130 hybrid contribution 0.897 0.177 0.441 1.015 sum 13.955 -19.863 -2.746 24.430 Atomic orbital electron populations 1.70021 1.06050 1.28162 1.44781 1.25343 0.95879 0.99014 0.96163 0.85748 0.78751 0.79465 0.79326 1.19359 1.20137 1.19348 1.21335 0.91898 0.80653 1.53195 0.88855 1.83976 1.34598 1.11622 1.76877 1.19458 0.90330 0.88055 0.91311 1.20211 0.99773 0.90228 1.11234 1.20520 0.92634 0.96929 0.96744 1.19067 0.93561 0.93102 1.17314 1.20423 0.99734 0.93490 0.81511 1.45603 1.47632 1.20246 1.12403 1.17867 0.82641 0.84339 0.85697 1.67333 1.21135 1.09917 1.29866 1.22393 0.89868 0.88384 0.82141 1.98543 1.85069 1.77964 1.29723 1.41442 1.44921 1.25543 1.02634 0.73491 1.19519 1.02112 0.94308 0.87427 1.70101 1.26572 1.30851 0.98594 1.24916 0.96614 0.88456 0.99783 1.70564 1.24147 1.29186 0.97489 1.19969 1.12107 0.99899 0.93594 1.20631 0.98384 0.91647 0.95736 1.21154 0.93762 0.99011 1.11743 0.91692 0.86228 0.86895 0.90058 0.90097 0.72814 0.78333 0.87330 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.26 13.67 55.48 0.76 -23.50 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.73 29.55 -169.99 -5.02 14.71 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.40 -10.55 9.49 30.89 0.29 -10.26 16 8 H 0.09 2.29 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.59 9.76 0.05 0.00 -4.59 16 10 C 0.16 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.20 -3.79 9.99 -39.39 -0.39 -4.19 16 12 C -0.05 -0.78 9.69 -39.61 -0.38 -1.17 16 13 C -0.23 -3.36 5.25 -104.58 -0.55 -3.90 16 14 C 0.17 1.95 5.81 -5.19 -0.03 1.92 16 15 N -0.64 -7.68 5.64 -61.38 -0.35 -8.03 16 16 C 0.54 6.64 7.53 -155.15 -1.17 5.47 16 17 N -0.55 -5.57 9.53 -10.42 -0.10 -5.66 16 18 C 0.47 3.64 8.23 -90.43 -0.74 2.90 16 19 Cl 0.06 0.28 29.19 -51.86 -1.51 -1.23 16 20 N -0.53 -4.34 5.36 -10.45 -0.06 -4.40 16 21 H 0.43 2.06 8.84 -40.82 -0.36 1.70 16 22 C 0.22 2.81 8.54 -155.46 -1.33 1.48 16 23 N -0.54 -7.73 11.32 -13.54 -0.15 -7.88 16 24 C 0.19 2.79 12.89 -91.43 -1.18 1.61 16 25 N -0.49 -7.76 11.38 -12.41 -0.14 -7.90 16 26 C -0.12 -1.64 7.16 -84.76 -0.61 -2.25 16 27 C -0.05 -0.74 9.69 -39.61 -0.38 -1.12 16 28 C -0.24 -4.75 9.17 -39.39 -0.36 -5.11 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.12 2.27 8.06 -52.49 -0.42 1.84 16 31 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.43 5.57 8.46 -40.82 -0.35 5.22 16 35 H 0.20 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.13 2.61 5.64 -52.49 -0.30 2.31 16 LS Contribution 347.15 15.07 5.23 5.23 Total: -1.00 -32.66 347.15 -11.47 -44.13 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -2.94 Total: 9.30 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -7.19 Total: -10.18 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.04 Total: -57.37 kcal Atomic # 8 Polarization: -4.59 SS G_CDS: 0.00 Total: -4.59 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.66 -11.47 -44.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458157604.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.236 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds