Wall clock time and date at job start Wed Apr 1 2020 03:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29362 * 1 3 3 Si 1.86797 * 120.00447 * 2 1 4 4 H 1.48504 * 109.47264 * 269.99869 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00207 * 3 2 1 6 6 H 1.48507 * 109.46992 * 150.00238 * 3 2 1 7 7 C 1.46638 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99708 * 179.97438 * 7 2 1 9 9 O 1.22317 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.35719 * 116.99831 * 174.93398 * 9 7 2 11 11 C 1.38988 * 120.03713 * 5.53232 * 10 9 7 12 12 C 1.38110 * 120.07003 * 180.02562 * 11 10 9 13 13 C 1.38206 * 120.14740 * 359.67802 * 12 11 10 14 14 C 1.38951 * 120.06392 * 0.59735 * 13 12 11 15 15 N 1.39858 * 120.03395 * 179.69766 * 14 13 12 16 16 C 1.34767 * 120.00068 * 214.87100 * 15 14 13 17 17 O 1.21599 * 120.00113 * 355.51268 * 16 15 14 18 18 C 1.47587 * 120.00164 * 175.78962 * 16 15 14 19 19 C 1.39578 * 120.49843 * 359.71726 * 18 16 15 20 20 N 1.31637 * 120.62483 * 180.02562 * 19 18 16 21 21 C 1.32438 * 121.79815 * 0.02562 * 20 19 18 22 22 O 1.35503 * 119.52470 * 179.97438 * 21 20 19 23 23 C 1.39126 * 120.95726 * 359.97438 * 21 20 19 24 24 N 1.48009 * 120.36978 * 180.02562 * 23 21 20 25 25 O 1.31705 * 120.00100 * 179.97438 * 24 23 21 26 26 O 1.31706 * 120.00022 * 359.97438 * 24 23 21 27 27 C 1.37993 * 119.26190 * 359.76025 * 23 21 20 28 28 C 1.38752 * 119.92873 * 359.42628 * 14 13 12 29 29 H 0.97010 * 119.99532 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.96039 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.92824 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.96853 * 180.29564 * 13 12 11 33 33 H 0.97005 * 119.99519 * 34.86990 * 15 14 13 34 34 H 1.08003 * 119.69058 * 0.03506 * 19 18 16 35 35 H 0.96698 * 113.99736 * 89.99720 * 22 21 20 36 36 H 1.08008 * 120.82313 * 180.27662 * 27 23 21 37 37 H 1.08001 * 120.07171 * 180.25276 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2277 1.6176 0.0000 4 1 2.4753 2.0463 -1.4001 5 1 1.4253 2.6526 0.7001 6 1 3.5253 1.4399 0.7000 7 6 2.0267 -1.2700 -0.0006 8 1 3.1067 -1.2700 -0.0010 9 8 1.4150 -2.3292 -0.0015 10 6 2.1501 -3.4651 -0.1088 11 6 3.5384 -3.3992 -0.0954 12 6 4.2871 -4.5546 -0.2050 13 6 3.6591 -5.7802 -0.3217 14 6 2.2716 -5.8523 -0.3415 15 7 1.6368 -7.0923 -0.4659 16 6 0.4839 -7.1928 -1.1565 17 8 -0.0471 -6.1937 -1.6020 18 6 -0.1373 -8.5149 -1.3670 19 6 0.4632 -9.6685 -0.8604 20 7 -0.0885 -10.8491 -1.0471 21 6 -1.2228 -10.9914 -1.7158 22 8 -1.7498 -12.2287 -1.8811 23 6 -1.8812 -9.8888 -2.2510 24 7 -3.1485 -10.0628 -2.9956 25 8 -3.7660 -9.0139 -3.4988 26 8 -3.6587 -11.2665 -3.1549 27 6 -1.3424 -8.6306 -2.0753 28 6 1.5165 -4.6934 -0.2320 29 1 -0.4850 0.8402 0.0004 30 1 4.0321 -2.4434 0.0000 31 1 5.3657 -4.5007 -0.1948 32 1 4.2474 -6.6823 -0.4024 33 1 2.0264 -7.8799 -0.0550 34 1 1.3892 -9.5920 -0.3099 35 1 -2.3574 -12.4946 -1.1774 36 1 -1.8347 -7.7569 -2.4762 37 1 0.4379 -4.7472 -0.2430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464233910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:31 Heat of formation + Delta-G solvation = 40.888357 kcal Electronic energy + Delta-G solvation = -28157.726964 eV Core-core repulsion = 23680.465431 eV Total energy + Delta-G solvation = -4477.261533 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.088 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -41.99988 -40.44114 -39.84560 -38.97218 -38.04334 -37.06772 -34.77661 -34.53953 -33.73840 -32.71186 -32.00931 -29.62254 -28.62555 -27.41745 -25.45676 -25.00383 -24.09936 -22.56486 -21.55619 -20.79710 -19.97157 -19.16544 -18.94823 -18.62063 -17.87300 -17.45082 -17.29310 -16.81981 -16.07044 -15.70070 -15.47755 -15.16468 -14.94616 -14.64147 -14.36683 -14.30301 -14.25122 -14.00188 -13.75769 -12.87645 -12.82676 -12.68062 -12.12205 -11.74180 -11.73527 -11.70183 -11.31039 -11.25197 -11.17903 -11.01665 -10.91001 -10.75344 -10.59446 -10.16389 -10.09839 -9.84204 -9.18023 -9.07039 -7.79635 -7.35592 -6.82389 -3.71205 -1.30287 -0.36835 0.32784 0.51519 1.83993 2.19385 2.33208 2.41785 2.68418 2.96039 3.00470 3.04299 3.05984 3.29393 3.62697 3.74575 3.80826 3.87651 4.12812 4.41582 4.63652 4.87213 4.96997 4.97249 5.19321 5.33718 5.65196 5.85347 6.03668 6.20724 6.26469 6.38239 6.40115 6.58011 6.63409 6.83662 6.88328 7.05270 7.29246 7.43422 7.48367 7.74211 7.80476 8.03678 8.58600 9.92950 10.40062 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.002271 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.310063 B =12326.077317 C =13786.248156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.039 3.961 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.405 4.405 8 H 0.090 0.910 9 O -0.106 6.106 10 C 0.118 3.882 11 C -0.260 4.260 12 C -0.046 4.046 13 C -0.260 4.260 14 C 0.169 3.831 15 N -0.654 5.654 16 C 0.554 3.446 17 O -0.488 6.488 18 C -0.185 4.185 19 C 0.211 3.789 20 N -0.487 5.487 21 C 0.413 3.587 22 O -0.451 6.451 23 C -0.083 4.083 24 N -0.016 5.016 25 O -0.163 6.163 26 O -0.138 6.138 27 C 0.064 3.936 28 C -0.186 4.186 29 H 0.284 0.716 30 H 0.123 0.877 31 H 0.108 0.892 32 H 0.104 0.896 33 H 0.403 0.597 34 H 0.189 0.811 35 H 0.421 0.579 36 H 0.187 0.813 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.288 -19.274 0.919 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.174 4.174 3 Si 0.768 3.232 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.483 4.483 8 H 0.107 0.893 9 O -0.002 6.002 10 C 0.061 3.939 11 C -0.280 4.280 12 C -0.065 4.065 13 C -0.282 4.282 14 C 0.076 3.924 15 N -0.299 5.299 16 C 0.339 3.661 17 O -0.361 6.361 18 C -0.192 4.192 19 C 0.053 3.947 20 N -0.207 5.207 21 C 0.231 3.769 22 O -0.262 6.262 23 C -0.173 4.173 24 N 0.466 4.534 25 O -0.354 6.354 26 O -0.337 6.337 27 C 0.037 3.963 28 C -0.208 4.208 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.239 0.761 34 H 0.206 0.794 35 H 0.285 0.715 36 H 0.205 0.795 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.599 -18.993 0.752 19.075 hybrid contribution -0.251 0.935 0.008 0.968 sum 1.348 -18.058 0.759 18.124 Atomic orbital electron populations 1.68925 1.07872 1.29647 1.37932 1.26882 0.95159 0.98751 0.96654 0.85639 0.79460 0.78892 0.79250 1.19448 1.19998 1.18568 1.20848 0.92935 0.82597 1.51900 0.89321 1.80318 1.36906 1.11782 1.71194 1.19032 0.89743 0.86894 0.98196 1.20806 0.93521 0.98723 1.14949 1.20361 0.97985 0.91648 0.96542 1.20028 0.91456 0.97576 1.19100 1.17007 0.90878 0.82886 1.01596 1.43112 1.23589 1.10720 1.52455 1.17580 0.81629 0.87242 0.79653 1.90962 1.60811 1.36273 1.48096 1.21134 0.97308 0.96518 1.04205 1.23430 0.96947 0.85115 0.89229 1.67770 1.09591 1.26892 1.16432 1.19128 0.87256 0.84303 0.86196 1.84759 1.63896 1.27108 1.50410 1.21584 0.89606 0.96506 1.09650 1.50085 1.01491 1.03179 0.98679 1.96359 1.61600 1.26722 1.50732 1.96302 1.68866 1.04906 1.63663 1.21734 0.91039 0.96648 0.86859 1.19898 0.99961 0.89178 1.11744 0.90404 0.85981 0.87435 0.87797 0.76068 0.79411 0.71488 0.79539 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 53. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.36 13.66 55.99 0.76 -21.59 16 2 C 0.04 1.01 5.69 -15.20 -0.09 0.93 16 3 Si 0.94 19.17 29.64 -169.99 -5.04 14.13 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.40 -10.88 9.48 34.12 0.32 -10.56 16 8 H 0.09 2.23 5.02 -52.49 -0.26 1.96 16 9 O -0.11 -2.96 9.28 21.00 0.19 -2.77 16 10 C 0.12 2.86 6.58 -39.11 -0.26 2.60 16 11 C -0.26 -5.56 9.12 -39.35 -0.36 -5.92 16 12 C -0.05 -0.82 10.03 -39.64 -0.40 -1.22 16 13 C -0.26 -4.23 9.96 -39.33 -0.39 -4.62 16 14 C 0.17 2.92 6.29 -83.74 -0.53 2.39 16 15 N -0.65 -8.00 5.28 -10.81 -0.06 -8.05 16 16 C 0.55 7.29 7.61 -12.45 -0.09 7.20 16 17 O -0.49 -8.88 13.85 5.28 0.07 -8.81 16 18 C -0.19 -1.71 5.89 -104.83 -0.62 -2.32 16 19 C 0.21 1.36 10.71 -17.14 -0.18 1.17 16 20 N -0.49 -3.73 10.37 -12.96 -0.13 -3.86 16 21 C 0.41 3.46 7.73 -16.96 -0.13 3.33 16 22 O -0.45 -3.23 11.48 -40.30 -0.46 -3.70 16 23 C -0.08 -0.82 6.92 -79.71 -0.55 -1.37 16 24 N -0.02 -0.19 4.98 34.08 0.17 -0.02 16 25 O -0.16 -2.27 19.22 -31.57 -0.61 -2.87 16 26 O -0.14 -1.68 17.91 -39.21 -0.70 -2.39 16 27 C 0.06 0.64 9.22 -38.91 -0.36 0.28 16 28 C -0.19 -4.06 8.64 -39.20 -0.34 -4.40 16 29 H 0.28 6.99 8.26 -40.82 -0.34 6.65 16 30 H 0.12 2.59 5.68 -52.49 -0.30 2.30 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.10 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.40 2.95 6.88 -40.82 -0.28 2.67 16 34 H 0.19 0.50 6.42 -52.48 -0.34 0.16 16 35 H 0.42 0.97 9.06 45.56 0.41 1.38 16 36 H 0.19 2.01 7.33 -52.48 -0.38 1.62 16 37 H 0.13 2.97 6.23 -52.49 -0.33 2.64 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -34.46 341.87 -6.08 -40.54 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -1.46 Total: 6.76 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.97 Total: -12.52 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.74 Total: -33.53 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -1.50 Total: -20.54 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.04 Total: 14.13 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.46 -6.08 -40.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464233910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.428 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds