Wall clock time and date at job start Wed Apr 1 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29362 * 1 3 3 Si 1.86797 * 120.00447 * 2 1 4 4 H 1.48504 * 109.47264 * 269.99869 * 3 2 1 5 5 H 1.48502 * 109.47125 * 30.00207 * 3 2 1 6 6 H 1.48507 * 109.46992 * 150.00238 * 3 2 1 7 7 C 1.46638 * 119.99559 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99708 * 179.97438 * 7 2 1 9 9 O 1.22317 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.35719 * 116.99831 * 174.93398 * 9 7 2 11 11 C 1.38988 * 120.03713 * 5.53232 * 10 9 7 12 12 C 1.38110 * 120.07003 * 180.02562 * 11 10 9 13 13 C 1.38206 * 120.14740 * 359.67802 * 12 11 10 14 14 C 1.38951 * 120.06392 * 0.59735 * 13 12 11 15 15 N 1.39858 * 120.03395 * 179.69766 * 14 13 12 16 16 C 1.34767 * 120.00068 * 214.87100 * 15 14 13 17 17 O 1.21599 * 120.00113 * 355.51268 * 16 15 14 18 18 C 1.47587 * 120.00164 * 175.78962 * 16 15 14 19 19 C 1.39578 * 120.49843 * 359.71726 * 18 16 15 20 20 N 1.31637 * 120.62483 * 180.02562 * 19 18 16 21 21 C 1.32438 * 121.79815 * 0.02562 * 20 19 18 22 22 O 1.35503 * 119.52470 * 179.97438 * 21 20 19 23 23 C 1.39126 * 120.95726 * 359.97438 * 21 20 19 24 24 N 1.48009 * 120.36978 * 180.02562 * 23 21 20 25 25 O 1.31705 * 120.00100 * 179.97438 * 24 23 21 26 26 O 1.31706 * 120.00022 * 359.97438 * 24 23 21 27 27 C 1.37993 * 119.26190 * 359.76025 * 23 21 20 28 28 C 1.38752 * 119.92873 * 359.42628 * 14 13 12 29 29 H 0.97010 * 119.99532 * 359.97438 * 1 2 3 30 30 H 1.08000 * 119.96039 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.92824 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.96853 * 180.29564 * 13 12 11 33 33 H 0.97005 * 119.99519 * 34.86990 * 15 14 13 34 34 H 1.08003 * 119.69058 * 0.03506 * 19 18 16 35 35 H 0.96698 * 113.99736 * 89.99720 * 22 21 20 36 36 H 1.08008 * 120.82313 * 180.27662 * 27 23 21 37 37 H 1.08001 * 120.07171 * 180.25276 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2936 0.0000 0.0000 3 14 2.2277 1.6176 0.0000 4 1 2.4753 2.0463 -1.4001 5 1 1.4253 2.6526 0.7001 6 1 3.5253 1.4399 0.7000 7 6 2.0267 -1.2700 -0.0006 8 1 3.1067 -1.2700 -0.0010 9 8 1.4150 -2.3292 -0.0015 10 6 2.1501 -3.4651 -0.1088 11 6 3.5384 -3.3992 -0.0954 12 6 4.2871 -4.5546 -0.2050 13 6 3.6591 -5.7802 -0.3217 14 6 2.2716 -5.8523 -0.3415 15 7 1.6368 -7.0923 -0.4659 16 6 0.4839 -7.1928 -1.1565 17 8 -0.0471 -6.1937 -1.6020 18 6 -0.1373 -8.5149 -1.3670 19 6 0.4632 -9.6685 -0.8604 20 7 -0.0885 -10.8491 -1.0471 21 6 -1.2228 -10.9914 -1.7158 22 8 -1.7498 -12.2287 -1.8811 23 6 -1.8812 -9.8888 -2.2510 24 7 -3.1485 -10.0628 -2.9956 25 8 -3.7660 -9.0139 -3.4988 26 8 -3.6587 -11.2665 -3.1549 27 6 -1.3424 -8.6306 -2.0753 28 6 1.5165 -4.6934 -0.2320 29 1 -0.4850 0.8402 0.0004 30 1 4.0321 -2.4434 0.0000 31 1 5.3657 -4.5007 -0.1948 32 1 4.2474 -6.6823 -0.4024 33 1 2.0264 -7.8799 -0.0550 34 1 1.3892 -9.5920 -0.3099 35 1 -2.3574 -12.4946 -1.1774 36 1 -1.8347 -7.7569 -2.4762 37 1 0.4379 -4.7472 -0.2430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464233910.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:30 Heat of formation + Delta-G solvation = 13.010154 kcal Electronic energy + Delta-G solvation = -28158.935854 eV Core-core repulsion = 23680.465431 eV Total energy + Delta-G solvation = -4478.470422 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.088 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.79514 -41.96134 -41.21530 -39.89003 -38.90397 -38.39872 -35.90862 -35.69638 -34.53896 -34.49783 -32.91551 -31.23799 -30.08251 -28.28302 -27.10741 -26.11223 -24.86923 -23.93552 -23.07883 -22.08167 -20.69514 -20.36159 -20.08204 -19.71355 -19.32106 -18.53673 -18.09036 -17.77564 -17.05284 -16.89304 -16.77625 -16.64939 -16.29748 -16.11298 -16.01431 -15.57143 -15.45548 -14.89446 -14.55130 -14.40145 -14.23631 -13.81993 -13.44931 -13.27803 -12.90949 -12.74489 -12.70034 -12.64960 -12.36951 -12.11911 -12.04250 -12.00915 -11.73708 -11.35185 -11.26944 -10.92394 -10.85221 -10.84504 -9.39233 -8.94873 -8.62196 -5.68558 -2.16308 -1.16390 -0.46498 -0.33473 0.46576 0.72522 1.23252 1.33983 1.44721 1.50410 1.61851 1.71109 2.03481 2.16748 2.58838 2.71247 2.80582 3.02785 3.17103 3.22443 3.33020 3.53578 3.89212 4.13138 4.21281 4.23357 4.42663 4.48330 4.57481 4.72346 4.81126 5.03986 5.11378 5.28731 5.41409 5.46469 5.60431 5.77685 5.79257 6.00240 6.18805 6.24340 6.28035 6.76650 6.92458 8.16991 8.66138 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017192 B = 0.002271 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.310063 B =12326.077317 C =13786.248156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.023 4.023 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.250 1.250 7 C -0.442 4.442 8 H 0.094 0.906 9 O -0.171 6.171 10 C 0.095 3.905 11 C -0.268 4.268 12 C -0.045 4.045 13 C -0.215 4.215 14 C 0.183 3.817 15 N -0.635 5.635 16 C 0.560 3.440 17 O -0.547 6.547 18 C -0.190 4.190 19 C 0.249 3.751 20 N -0.484 5.484 21 C 0.439 3.561 22 O -0.455 6.455 23 C -0.096 4.096 24 N -0.011 5.011 25 O -0.236 6.236 26 O -0.111 6.111 27 C 0.063 3.937 28 C -0.216 4.216 29 H 0.286 0.714 30 H 0.117 0.883 31 H 0.155 0.845 32 H 0.167 0.833 33 H 0.434 0.566 34 H 0.239 0.761 35 H 0.444 0.556 36 H 0.166 0.834 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.604 -24.175 1.775 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.228 4.228 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.192 1.192 6 H -0.173 1.173 7 C -0.521 4.521 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.043 3.957 11 C -0.288 4.288 12 C -0.063 4.063 13 C -0.235 4.235 14 C 0.089 3.911 15 N -0.283 5.283 16 C 0.347 3.653 17 O -0.424 6.424 18 C -0.196 4.196 19 C 0.090 3.910 20 N -0.204 5.204 21 C 0.256 3.744 22 O -0.270 6.270 23 C -0.188 4.188 24 N 0.466 4.534 25 O -0.410 6.410 26 O -0.322 6.322 27 C 0.036 3.964 28 C -0.238 4.238 29 H 0.097 0.903 30 H 0.135 0.865 31 H 0.172 0.828 32 H 0.184 0.816 33 H 0.276 0.724 34 H 0.255 0.745 35 H 0.313 0.687 36 H 0.184 0.816 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.920 -23.879 1.600 24.654 hybrid contribution -1.346 1.603 -0.246 2.108 sum 4.575 -22.276 1.355 22.781 Atomic orbital electron populations 1.69042 1.09781 1.30487 1.42466 1.28102 0.96149 1.02152 0.96385 0.84577 0.78284 0.73924 0.79445 1.18867 1.19173 1.17290 1.21177 0.93272 0.83251 1.54353 0.88893 1.80337 1.38089 1.12785 1.75909 1.19763 0.91404 0.87038 0.97518 1.21082 0.92557 1.00496 1.14686 1.20948 1.00245 0.90571 0.94533 1.20782 0.90812 0.99349 1.12578 1.17127 0.91620 0.83392 0.98979 1.42892 1.23197 1.09965 1.52253 1.18049 0.81051 0.87907 0.78279 1.90977 1.62304 1.38798 1.50298 1.20668 0.97337 0.95424 1.06193 1.24114 0.97056 0.83245 0.86538 1.68036 1.09064 1.26775 1.16490 1.19213 0.86864 0.84096 0.84196 1.84702 1.64501 1.26009 1.51775 1.21654 0.89119 0.97080 1.10922 1.50332 1.02018 1.02733 0.98315 1.96386 1.63419 1.26923 1.54293 1.96257 1.68789 1.04971 1.62156 1.21632 0.91508 0.96398 0.86847 1.20042 0.99410 0.90568 1.13776 0.90306 0.86547 0.82785 0.81551 0.72432 0.74532 0.68719 0.81610 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.28 13.66 23.22 0.32 -52.96 16 2 C -0.02 -1.30 5.69 87.25 0.50 -0.80 16 3 Si 1.02 41.84 29.64 68.60 2.03 43.87 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.69 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.44 -25.81 9.48 70.01 0.66 -25.15 16 8 H 0.09 5.00 5.02 -2.91 -0.01 4.99 16 9 O -0.17 -10.43 9.28 52.21 0.48 -9.94 16 10 C 0.10 4.83 6.58 22.57 0.15 4.98 16 11 C -0.27 -11.35 9.12 22.42 0.20 -11.14 16 12 C -0.04 -1.36 10.03 22.23 0.22 -1.14 16 13 C -0.21 -5.55 9.96 22.43 0.22 -5.32 16 14 C 0.18 5.71 6.29 38.15 0.24 5.95 16 15 N -0.64 -12.73 5.28 -306.37 -1.62 -14.35 16 16 C 0.56 13.77 7.61 86.71 0.66 14.43 16 17 O -0.55 -20.75 13.85 -4.03 -0.06 -20.81 16 18 C -0.19 -2.99 5.89 -20.00 -0.12 -3.11 16 19 C 0.25 1.81 10.71 85.05 0.91 2.72 16 20 N -0.48 -4.87 10.37 -307.78 -3.19 -8.06 16 21 C 0.44 5.75 7.73 84.81 0.66 6.41 16 22 O -0.46 -4.72 11.48 -66.91 -0.77 -5.49 16 23 C -0.10 -1.78 6.92 36.53 0.25 -1.53 16 24 N -0.01 -0.27 4.98 -46.10 -0.23 -0.50 16 25 O -0.24 -7.17 19.22 3.51 0.07 -7.10 16 26 O -0.11 -2.54 17.91 10.81 0.19 -2.35 16 27 C 0.06 1.24 9.22 22.70 0.21 1.45 16 28 C -0.22 -9.68 8.64 22.52 0.19 -9.49 16 29 H 0.29 15.49 8.26 -92.70 -0.77 14.73 16 30 H 0.12 5.03 5.68 -2.91 -0.02 5.01 16 31 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.43 3.18 6.88 -92.70 -0.64 2.55 16 34 H 0.24 -0.72 6.42 -2.91 -0.02 -0.74 16 35 H 0.44 0.20 9.06 -74.06 -0.67 -0.47 16 36 H 0.17 4.01 7.33 -2.91 -0.02 3.99 16 37 H 0.10 5.08 6.23 -2.91 -0.02 5.06 16 Total: -1.00 -88.73 341.87 2.11 -86.62 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.09 Total: 12.82 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 4.96 Total: -21.74 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -4.72 Total: -75.88 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -0.08 Total: -45.69 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -88.73 2.11 -86.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464233910.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.632 kcal (2) G-P(sol) polarization free energy of solvation -88.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds