Wall clock time and date at job start Wed Apr 1 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46754 * 270.00132 * 3 2 1 5 5 H 1.48495 * 109.46949 * 29.99887 * 3 2 1 6 6 H 1.48495 * 109.47225 * 150.00346 * 3 2 1 7 7 C 1.38814 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99872 * 157.93626 * 7 2 1 9 9 N 1.36935 * 120.00273 * 337.93463 * 7 2 1 10 10 C 1.46504 * 119.99937 * 324.92932 * 9 7 2 11 11 C 1.52993 * 109.47058 * 270.00095 * 10 9 7 12 12 C 1.53001 * 109.47105 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47179 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00193 * 179.97438 * 13 12 11 15 15 O 1.21716 * 120.00043 * 0.02562 * 14 13 12 16 16 C 1.46541 * 120.00283 * 180.02562 * 14 13 12 17 17 C 1.37963 * 126.22317 * 180.02562 * 16 14 13 18 18 C 1.39790 * 107.12767 * 179.97438 * 17 16 14 19 19 Cl 1.73602 * 126.06540 * 180.02562 * 18 17 16 20 20 C 1.35725 * 107.87739 * 359.97438 * 18 17 16 21 21 Cl 1.73598 * 125.58408 * 180.02562 * 20 18 17 22 22 N 1.35666 * 108.82769 * 359.75758 * 20 18 17 23 23 H 0.97000 * 125.69133 * 180.25299 * 22 20 18 24 24 C 1.46494 * 120.00432 * 144.92717 * 9 7 2 25 25 C 1.53008 * 117.49603 * 3.23731 * 24 9 7 26 26 C 1.53005 * 117.50060 * 294.58235 * 24 9 7 27 27 H 0.96995 * 119.99672 * 356.06739 * 1 2 3 28 28 H 1.09004 * 109.46899 * 29.99431 * 10 9 7 29 29 H 1.08991 * 109.47322 * 149.99588 * 10 9 7 30 30 H 1.09002 * 109.47423 * 299.99679 * 11 10 9 31 31 H 1.09002 * 109.47930 * 59.99783 * 11 10 9 32 32 H 1.08999 * 109.47331 * 299.99413 * 12 11 10 33 33 H 1.08998 * 109.47503 * 59.99842 * 12 11 10 34 34 H 0.96999 * 120.00323 * 359.97438 * 13 12 11 35 35 H 1.07998 * 126.43796 * 359.97184 * 17 16 14 36 36 H 1.08998 * 115.55292 * 148.90958 * 24 9 7 37 37 H 1.09004 * 117.49709 * 0.02562 * 25 24 9 38 38 H 1.09001 * 117.49616 * 145.02232 * 25 24 9 39 39 H 1.08992 * 117.50031 * 214.97936 * 26 24 9 40 40 H 1.09007 * 117.49694 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4008 -2.3449 0.4444 10 6 0.4456 -2.2814 1.5535 11 6 1.1887 -2.4675 2.8778 12 6 0.1912 -2.4006 4.0360 13 7 0.9027 -2.5794 5.3041 14 6 0.2226 -2.5566 6.4675 15 8 -0.9828 -2.3879 6.4645 16 6 0.9343 -2.7349 7.7360 17 6 0.3695 -2.7347 8.9947 18 6 1.4057 -2.9369 9.9109 19 17 1.2415 -3.0225 11.6370 20 6 2.5629 -3.0555 9.2117 21 17 4.1355 -3.3192 9.8981 22 7 2.2884 -2.9402 7.8881 23 1 2.9375 -2.9912 7.1690 24 6 1.7039 -3.6308 -0.1884 25 6 2.7654 -3.6431 -1.2903 26 6 1.2873 -3.8150 -1.6491 27 1 -0.4849 0.8381 0.0576 28 1 -0.0520 -1.3115 1.5493 29 1 -0.2968 -3.0711 1.4392 30 1 1.6864 -3.4373 2.8821 31 1 1.9312 -1.6777 2.9921 32 1 -0.3060 -1.4306 4.0318 33 1 -0.5515 -3.1901 3.9221 34 1 1.8633 -2.7142 5.3066 35 1 -0.6767 -2.6030 9.2283 36 1 1.6464 -4.5015 0.4648 37 1 3.2386 -2.6945 -1.5439 38 1 3.4061 -4.5221 -1.3621 39 1 0.9562 -4.8067 -1.9568 40 1 0.7874 -2.9794 -2.1391 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479873708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:57 Heat of formation + Delta-G solvation = 39.311168 kcal Electronic energy + Delta-G solvation = -24458.658097 eV Core-core repulsion = 20555.437582 eV Total energy + Delta-G solvation = -3903.220515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.87482 -39.28990 -37.26746 -37.19137 -36.80637 -35.49010 -33.70675 -31.93691 -31.43372 -30.06799 -28.97681 -25.60642 -23.99236 -22.66081 -21.54359 -21.24852 -21.08565 -20.70207 -19.80493 -19.14047 -16.61110 -16.52143 -15.98287 -15.78228 -15.46255 -15.12574 -15.03674 -14.65635 -14.27237 -14.08146 -13.79093 -13.61940 -13.57219 -12.72553 -12.31526 -12.30612 -12.21321 -12.00040 -11.85225 -11.61546 -11.25828 -11.11159 -10.91740 -10.82026 -10.74039 -10.39107 -10.26346 -10.03082 -9.73659 -9.64724 -9.44434 -9.33340 -9.15065 -8.63091 -8.54436 -6.65716 -5.87381 -3.47883 0.83305 1.02075 1.72811 1.83236 2.72903 3.06001 3.08128 3.28066 3.37057 3.38092 4.36553 4.40499 4.51763 4.86119 4.97504 5.07278 5.23480 5.25044 5.51639 5.59078 5.79524 5.84242 5.87797 6.00162 6.04050 6.15955 6.19587 6.27537 6.42938 6.46748 6.55545 6.57222 6.63356 6.96249 7.00272 7.16649 7.33884 7.57800 7.72043 7.98424 8.38717 9.06461 9.69565 10.25118 11.08686 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.002123 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.971057 B =13183.147528 C =13335.649580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.011 3.989 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.551 5.551 10 C 0.149 3.851 11 C -0.146 4.146 12 C 0.121 3.879 13 N -0.721 5.721 14 C 0.584 3.416 15 O -0.519 6.519 16 C -0.011 4.011 17 C -0.089 4.089 18 C -0.098 4.098 19 Cl -0.029 7.029 20 C 0.096 3.904 21 Cl 0.004 6.996 22 N -0.522 5.522 23 H 0.428 0.572 24 C 0.120 3.880 25 C -0.197 4.197 26 C -0.222 4.222 27 H 0.256 0.744 28 H 0.103 0.897 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.393 0.607 35 H 0.169 0.831 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 -7.839 18.845 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.189 4.189 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.187 4.187 12 C -0.002 4.002 13 N -0.372 5.372 14 C 0.370 3.630 15 O -0.394 6.394 16 C -0.125 4.125 17 C -0.115 4.115 18 C -0.133 4.133 19 Cl 0.000 7.000 20 C -0.048 4.048 21 Cl 0.032 6.968 22 N -0.123 5.123 23 H 0.268 0.732 24 C 0.011 3.989 25 C -0.235 4.235 26 C -0.263 4.263 27 H 0.066 0.934 28 H 0.121 0.879 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.226 0.774 35 H 0.186 0.814 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.915 -7.576 18.815 20.870 hybrid contribution 1.573 0.717 -0.228 1.744 sum 6.488 -6.859 18.588 20.848 Atomic orbital electron populations 1.70030 1.05489 1.26172 1.50668 1.25131 0.94976 0.98746 1.00069 0.86445 0.79497 0.83756 0.77949 1.21197 1.21365 1.20373 1.19036 0.94400 0.85456 1.40033 0.91689 1.43400 1.49133 1.01424 1.32823 1.20852 0.90462 1.03450 0.83010 1.22473 0.98856 1.01270 0.96061 1.21570 0.95605 1.02336 0.80687 1.46085 1.11223 1.73159 1.06687 1.16832 0.86749 0.77718 0.81727 1.90898 1.12876 1.49280 1.86376 1.20619 0.81425 1.14413 0.96027 1.21166 0.99698 1.02462 0.88218 1.19612 0.92247 1.14841 0.86636 1.98353 1.97771 1.97245 1.06641 1.20580 0.88582 1.11678 0.83965 1.98433 1.21647 1.94954 1.81743 1.41924 1.08643 1.55628 1.06112 0.73155 1.21223 1.00391 0.90190 0.87087 1.23038 0.91956 1.01813 1.06705 1.23366 0.97320 1.00677 1.04920 0.93404 0.87910 0.95241 0.93156 0.91511 0.90857 0.91353 0.77378 0.81375 0.89654 0.88507 0.90819 0.91227 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.03 11.33 55.49 0.63 -23.40 16 2 C 0.01 0.30 4.96 -17.43 -0.09 0.21 16 3 Si 0.89 20.52 29.61 -169.99 -5.03 15.48 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.26 -6.58 8.63 -15.06 -0.13 -6.71 16 8 H 0.07 1.66 6.55 -52.48 -0.34 1.31 16 9 N -0.55 -12.67 2.78 -165.66 -0.46 -13.13 16 10 C 0.15 3.13 5.34 -4.04 -0.02 3.11 16 11 C -0.15 -2.41 5.65 -26.73 -0.15 -2.57 16 12 C 0.12 1.79 5.67 -4.04 -0.02 1.76 16 13 N -0.72 -8.67 5.55 -61.66 -0.34 -9.01 16 14 C 0.58 7.72 7.78 -12.92 -0.10 7.62 16 15 O -0.52 -8.77 16.88 5.17 0.09 -8.69 16 16 C -0.01 -0.12 7.06 -81.93 -0.58 -0.69 16 17 C -0.09 -0.95 10.64 -39.10 -0.42 -1.36 16 18 C -0.10 -0.98 6.66 -39.90 -0.27 -1.24 16 19 Cl -0.03 -0.26 29.12 -51.86 -1.51 -1.77 16 20 C 0.10 0.86 7.75 -16.76 -0.13 0.73 16 21 Cl 0.00 0.03 29.13 -51.86 -1.51 -1.48 16 22 N -0.52 -4.28 6.01 -6.51 -0.04 -4.32 16 23 H 0.43 2.38 8.19 -40.82 -0.33 2.04 16 24 C 0.12 2.43 6.56 -67.93 -0.45 1.98 16 25 C -0.20 -3.72 9.80 -26.69 -0.26 -3.98 16 26 C -0.22 -4.38 10.36 -26.69 -0.28 -4.65 16 27 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 28 H 0.10 2.50 5.36 -51.93 -0.28 2.22 16 29 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.39 3.59 7.60 -40.82 -0.31 3.28 16 35 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 37 H 0.10 2.00 6.37 -51.93 -0.33 1.67 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -29.23 372.23 -10.41 -39.64 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -4.96 Total: 6.85 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.89 Total: -5.78 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.21 Total: -49.86 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.48 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -3.02 Total: -3.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.23 -10.41 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479873708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.949 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds