Wall clock time and date at job start Wed Apr 1 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99936 * 2 1 4 4 C 1.52997 * 109.46741 * 269.99619 * 3 2 1 5 5 N 1.46900 * 109.47004 * 179.97438 * 4 3 2 6 6 C 1.46896 * 111.00135 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47551 * 179.97438 * 6 5 4 8 8 O 1.21303 * 119.99901 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00699 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00373 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99975 * 0.02562 * 10 9 7 12 12 C 1.38945 * 120.00045 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99871 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99978 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46995 * 89.99867 * 14 12 10 16 16 H 1.48503 * 109.47403 * 209.99754 * 14 12 10 17 17 H 1.48499 * 109.47225 * 330.00327 * 14 12 10 18 18 C 1.34771 * 120.00443 * 179.97438 * 2 1 3 19 19 O 1.21724 * 120.00548 * 180.33063 * 18 2 1 20 20 C 1.46445 * 119.99746 * 0.32940 * 18 2 1 21 21 S 1.75828 * 125.46303 * 350.45019 * 20 18 2 22 22 C 1.70608 * 91.58646 * 180.02562 * 21 20 18 23 23 C 1.33778 * 110.99906 * 359.97438 * 22 21 20 24 24 C 1.36797 * 125.46116 * 170.47245 * 20 18 2 25 25 Cl 1.73603 * 123.37776 * 0.02562 * 24 20 18 26 26 H 1.08993 * 109.47435 * 263.48250 * 1 2 3 27 27 H 1.08996 * 109.46955 * 23.49188 * 1 2 3 28 28 H 1.09002 * 109.46765 * 143.48587 * 1 2 3 29 29 H 1.08998 * 109.46651 * 29.99261 * 3 2 1 30 30 H 1.08999 * 109.47317 * 149.99233 * 3 2 1 31 31 H 1.09002 * 109.47087 * 300.00011 * 4 3 2 32 32 H 1.08999 * 109.47530 * 59.99745 * 4 3 2 33 33 H 1.00907 * 110.99779 * 56.04719 * 5 4 3 34 34 H 1.08998 * 109.47296 * 300.00112 * 6 5 4 35 35 H 1.09004 * 109.46986 * 60.00349 * 6 5 4 36 36 H 0.97002 * 119.99508 * 0.02562 * 9 7 6 37 37 H 0.97011 * 119.99952 * 179.97438 * 13 12 10 38 38 H 1.08003 * 124.49877 * 179.73679 * 22 21 20 39 39 H 1.07995 * 122.44680 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1865 2.9828 -1.4426 6 6 3.4503 3.4384 -2.8140 7 6 4.2024 4.7436 -2.7739 8 8 4.4908 5.2450 -1.7076 9 7 4.5546 5.3541 -3.9227 10 6 5.2393 6.5413 -3.8862 11 1 5.4968 6.9872 -2.9368 12 6 5.6029 7.1703 -5.0705 13 7 6.2587 8.3086 -5.0355 14 14 5.1582 6.3988 -6.7126 15 1 3.8277 6.8942 -7.1482 16 1 6.1796 6.7673 -7.7256 17 1 5.1135 4.9214 -6.5694 18 6 2.1390 -1.1671 0.0005 19 8 3.3562 -1.1671 0.0066 20 6 1.4068 -2.4354 -0.0062 21 16 -0.3275 -2.6133 0.2223 22 6 -0.2226 -4.3086 0.0617 23 6 1.0413 -4.6928 -0.1496 24 6 1.9626 -3.6716 -0.1909 25 17 3.6601 -3.9266 -0.4504 26 1 -0.3634 -0.1166 1.0209 27 1 -0.3633 0.9425 -0.4096 28 1 -0.3633 -0.8260 -0.6115 29 1 1.6083 2.0284 0.5137 30 1 3.1499 1.1385 0.5139 31 1 3.0417 0.9506 -1.9563 32 1 1.5002 1.8406 -1.9564 33 1 4.0440 2.9057 -0.9163 34 1 4.0469 2.6908 -3.3367 35 1 2.5050 3.5802 -3.3379 36 1 4.3237 4.9534 -4.7754 37 1 6.5129 8.7476 -5.8624 38 1 -1.0642 -4.9824 0.1262 39 1 1.3183 -5.7288 -0.2774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481232707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:48 Heat of formation + Delta-G solvation = -18.898261 kcal Electronic energy + Delta-G solvation = -24316.940864 eV Core-core repulsion = 20413.239905 eV Total energy + Delta-G solvation = -3903.700959 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32856 -38.53670 -38.32079 -36.45883 -36.36642 -35.14888 -33.86815 -31.66736 -31.12111 -29.41365 -27.45664 -26.44039 -25.06771 -23.77166 -22.46073 -21.00976 -19.76154 -19.36605 -18.56370 -18.27574 -16.88362 -16.56634 -16.37572 -15.76260 -15.68642 -15.58688 -14.86568 -14.20103 -14.13295 -14.01770 -13.92433 -13.72641 -13.62368 -13.42267 -13.14122 -13.10994 -12.99538 -12.42541 -12.35941 -11.93472 -11.81055 -11.65668 -11.29670 -11.21192 -11.13525 -11.05468 -10.58027 -10.22109 -9.96046 -9.55631 -9.41913 -9.22883 -8.81643 -8.57139 -8.19432 -8.14550 -6.29414 -3.80748 -0.10897 0.68614 1.25877 1.73701 2.07104 2.47108 2.76436 3.04337 3.08215 3.16334 3.75825 3.99483 4.11472 4.21263 4.45132 4.50248 4.59630 4.77800 4.84579 4.97067 5.08891 5.12767 5.16365 5.24505 5.40787 5.41900 5.47575 5.62365 5.72964 5.79154 5.84739 5.93929 6.10837 6.89541 7.04947 7.54584 7.59937 7.76093 8.16232 8.61483 8.96659 9.44160 9.84388 10.83688 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.001942 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.860497 B =14411.736560 C =14828.052529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.610 5.610 3 C 0.120 3.880 4 C 0.045 3.955 5 N -0.666 5.666 6 C 0.050 3.950 7 C 0.450 3.550 8 O -0.564 6.564 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.583 3.417 19 O -0.504 6.504 20 C -0.271 4.271 21 S 0.266 5.734 22 C -0.251 4.251 23 C -0.144 4.144 24 C 0.020 3.980 25 Cl -0.014 7.014 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.173 0.827 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.887 -28.704 8.673 35.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.343 5.343 3 C -0.002 4.002 4 C -0.086 4.086 5 N -0.299 5.299 6 C -0.083 4.083 7 C 0.236 3.764 8 O -0.446 6.446 9 N -0.230 5.230 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.370 3.630 19 O -0.380 6.380 20 C -0.392 4.392 21 S 0.534 5.466 22 C -0.388 4.388 23 C -0.175 4.175 24 C -0.023 4.023 25 Cl 0.015 6.985 26 H 0.088 0.912 27 H 0.117 0.883 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.191 0.809 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.539 -26.846 9.601 34.563 hybrid contribution 1.499 -2.383 -2.127 3.529 sum -18.039 -29.229 7.475 35.151 Atomic orbital electron populations 1.22087 0.79881 1.03825 1.02682 1.47614 1.06746 1.06076 1.73905 1.21481 0.98457 0.82987 0.97305 1.22275 0.99140 0.90609 0.96600 1.60025 1.28587 1.27848 1.13445 1.21688 1.00233 0.95969 0.90436 1.19690 0.84818 0.87115 0.84764 1.90568 1.57997 1.66730 1.29291 1.42204 1.52246 1.22358 1.06221 1.19435 1.30903 0.96165 0.96800 0.86253 1.25042 0.97124 0.96010 0.98051 1.69626 1.38284 1.15938 1.28300 0.86665 0.79228 0.79273 0.84187 1.19607 1.20191 1.19523 1.16846 0.86867 0.81942 0.77318 1.90922 1.12125 1.86346 1.48613 1.24509 0.98580 0.97247 1.18870 1.83661 1.00562 0.97312 1.65062 1.25811 1.01501 1.04466 1.06987 1.19753 0.91315 1.00542 1.05886 1.20370 0.88409 0.92275 1.01232 1.98421 1.09542 1.96515 1.94010 0.91187 0.88336 0.90895 0.88807 0.89214 0.94911 0.91034 0.82726 0.93656 0.89482 0.79689 0.91630 0.80913 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 8.91 59.85 0.53 0.86 16 2 N -0.61 -5.74 2.87 -183.21 -0.53 -6.27 16 3 C 0.12 1.27 5.64 -4.04 -0.02 1.25 16 4 C 0.04 0.54 6.01 -3.83 -0.02 0.52 16 5 N -0.67 -10.45 6.13 -115.06 -0.70 -11.16 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.45 10.40 7.82 -10.99 -0.09 10.32 16 8 O -0.56 -15.34 15.78 5.54 0.09 -15.26 16 9 N -0.59 -14.30 5.09 -10.96 -0.06 -14.36 16 10 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 11 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.98 13.96 55.50 0.77 -25.21 16 14 Si 0.88 19.59 27.74 -169.99 -4.71 14.87 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 18 C 0.58 6.87 7.62 -12.96 -0.10 6.77 16 19 O -0.50 -7.73 14.73 5.17 0.08 -7.66 16 20 C -0.27 -2.58 6.22 -36.80 -0.23 -2.81 16 21 S 0.27 1.37 17.91 -107.50 -1.93 -0.56 16 22 C -0.25 -1.26 10.92 29.17 0.32 -0.94 16 23 C -0.14 -1.00 10.06 -41.38 -0.42 -1.42 16 24 C 0.02 0.19 6.39 -40.34 -0.26 -0.06 16 25 Cl -0.01 -0.16 27.30 -51.86 -1.42 -1.57 16 26 H 0.07 0.27 7.75 -51.93 -0.40 -0.13 16 27 H 0.10 0.41 8.02 -51.93 -0.42 -0.01 16 28 H 0.07 0.34 4.64 -23.49 -0.11 0.23 16 29 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.09 1.10 7.41 -51.93 -0.39 0.72 16 31 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.35 5.88 8.43 -39.29 -0.33 5.55 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.17 0.40 8.06 -52.48 -0.42 -0.03 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 358.14 15.07 5.40 5.40 Total: -1.00 -35.80 358.14 -7.96 -43.76 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.39 Total: 10.54 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.56 Total: 7.46 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.51 Total: -56.99 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.16 Total: -22.91 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.71 Total: 14.87 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -1.93 Total: -0.56 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.42 Total: -1.57 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.80 -7.96 -43.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481232707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.863 kcal (2) G-P(sol) polarization free energy of solvation -35.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds