Wall clock time and date at job start Wed Apr 1 2020 02:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46507 * 119.99936 * 2 1 4 4 C 1.52997 * 109.46741 * 269.99619 * 3 2 1 5 5 N 1.46900 * 109.47004 * 179.97438 * 4 3 2 6 6 C 1.46896 * 111.00135 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.47551 * 179.97438 * 6 5 4 8 8 O 1.21303 * 119.99901 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00699 * 180.02562 * 7 6 5 10 10 C 1.37098 * 120.00373 * 180.02562 * 9 7 6 11 11 H 1.08001 * 119.99975 * 0.02562 * 10 9 7 12 12 C 1.38945 * 120.00045 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99871 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99978 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46995 * 89.99867 * 14 12 10 16 16 H 1.48503 * 109.47403 * 209.99754 * 14 12 10 17 17 H 1.48499 * 109.47225 * 330.00327 * 14 12 10 18 18 C 1.34771 * 120.00443 * 179.97438 * 2 1 3 19 19 O 1.21724 * 120.00548 * 180.33063 * 18 2 1 20 20 C 1.46445 * 119.99746 * 0.32940 * 18 2 1 21 21 S 1.75828 * 125.46303 * 350.45019 * 20 18 2 22 22 C 1.70608 * 91.58646 * 180.02562 * 21 20 18 23 23 C 1.33778 * 110.99906 * 359.97438 * 22 21 20 24 24 C 1.36797 * 125.46116 * 170.47245 * 20 18 2 25 25 Cl 1.73603 * 123.37776 * 0.02562 * 24 20 18 26 26 H 1.08993 * 109.47435 * 263.48250 * 1 2 3 27 27 H 1.08996 * 109.46955 * 23.49188 * 1 2 3 28 28 H 1.09002 * 109.46765 * 143.48587 * 1 2 3 29 29 H 1.08998 * 109.46651 * 29.99261 * 3 2 1 30 30 H 1.08999 * 109.47317 * 149.99233 * 3 2 1 31 31 H 1.09002 * 109.47087 * 300.00011 * 4 3 2 32 32 H 1.08999 * 109.47530 * 59.99745 * 4 3 2 33 33 H 1.00907 * 110.99779 * 56.04719 * 5 4 3 34 34 H 1.08998 * 109.47296 * 300.00112 * 6 5 4 35 35 H 1.09004 * 109.46986 * 60.00349 * 6 5 4 36 36 H 0.97002 * 119.99508 * 0.02562 * 9 7 6 37 37 H 0.97011 * 119.99952 * 179.97438 * 13 12 10 38 38 H 1.08003 * 124.49877 * 179.73679 * 22 21 20 39 39 H 1.07995 * 122.44680 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1865 2.9828 -1.4426 6 6 3.4503 3.4384 -2.8140 7 6 4.2024 4.7436 -2.7739 8 8 4.4908 5.2450 -1.7076 9 7 4.5546 5.3541 -3.9227 10 6 5.2393 6.5413 -3.8862 11 1 5.4968 6.9872 -2.9368 12 6 5.6029 7.1703 -5.0705 13 7 6.2587 8.3086 -5.0355 14 14 5.1582 6.3988 -6.7126 15 1 3.8277 6.8942 -7.1482 16 1 6.1796 6.7673 -7.7256 17 1 5.1135 4.9214 -6.5694 18 6 2.1390 -1.1671 0.0005 19 8 3.3562 -1.1671 0.0066 20 6 1.4068 -2.4354 -0.0062 21 16 -0.3275 -2.6133 0.2223 22 6 -0.2226 -4.3086 0.0617 23 6 1.0413 -4.6928 -0.1496 24 6 1.9626 -3.6716 -0.1909 25 17 3.6601 -3.9266 -0.4504 26 1 -0.3634 -0.1166 1.0209 27 1 -0.3633 0.9425 -0.4096 28 1 -0.3633 -0.8260 -0.6115 29 1 1.6083 2.0284 0.5137 30 1 3.1499 1.1385 0.5139 31 1 3.0417 0.9506 -1.9563 32 1 1.5002 1.8406 -1.9564 33 1 4.0440 2.9057 -0.9163 34 1 4.0469 2.6908 -3.3367 35 1 2.5050 3.5802 -3.3379 36 1 4.3237 4.9534 -4.7754 37 1 6.5129 8.7476 -5.8624 38 1 -1.0642 -4.9824 0.1262 39 1 1.3183 -5.7288 -0.2774 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481232707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:48 Heat of formation + Delta-G solvation = -47.364957 kcal Electronic energy + Delta-G solvation = -24318.175273 eV Core-core repulsion = 20413.239905 eV Total energy + Delta-G solvation = -3904.935368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.11222 -40.30979 -38.99141 -37.46750 -37.07079 -36.32508 -35.78661 -33.76369 -31.97533 -30.26363 -28.31856 -27.60501 -26.10036 -25.09570 -23.45495 -21.77033 -21.27609 -20.33118 -20.28204 -19.16987 -17.90486 -17.60117 -17.29169 -16.95002 -16.73478 -16.65031 -16.34557 -15.62774 -15.29154 -14.98962 -14.86543 -14.58151 -14.50549 -14.43670 -14.17617 -14.14031 -13.88449 -13.77162 -13.63341 -13.42182 -12.99574 -12.78717 -12.47082 -12.42276 -12.12080 -11.98969 -11.94855 -11.59861 -11.52388 -11.07306 -10.49772 -10.26106 -10.06726 -9.81720 -9.45300 -9.32548 -8.42109 -6.03199 -0.68701 0.14604 0.81809 1.18387 1.29954 1.34960 1.42475 1.44010 1.74281 1.93142 2.00378 2.22348 2.74516 3.13653 3.35601 3.49905 3.96724 4.01238 4.05092 4.07758 4.13586 4.18815 4.40606 4.47235 4.50512 4.55882 4.68520 4.77397 4.80326 4.92877 4.97665 5.01726 5.32683 5.51540 5.85271 5.98023 6.17325 6.25303 6.58075 6.86462 6.97579 7.37814 7.93956 8.75439 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.019813 B = 0.001942 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.860497 B =14411.736560 C =14828.052529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.605 5.605 3 C 0.125 3.875 4 C 0.054 3.946 5 N -0.678 5.678 6 C 0.063 3.937 7 C 0.448 3.552 8 O -0.613 6.613 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.056 0.944 12 C -0.016 4.016 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.254 1.254 16 H -0.275 1.275 17 H -0.234 1.234 18 C 0.575 3.425 19 O -0.556 6.556 20 C -0.312 4.312 21 S 0.348 5.652 22 C -0.237 4.237 23 C -0.163 4.163 24 C 0.004 3.996 25 Cl -0.045 7.045 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.095 0.905 33 H 0.343 0.657 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.208 0.792 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.110 -31.313 7.010 39.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.338 5.338 3 C 0.002 3.998 4 C -0.076 4.076 5 N -0.310 5.310 6 C -0.069 4.069 7 C 0.236 3.764 8 O -0.498 6.498 9 N -0.232 5.232 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.215 4.215 13 N -0.574 5.574 14 Si 0.786 3.214 15 H -0.178 1.178 16 H -0.200 1.200 17 H -0.157 1.157 18 C 0.363 3.637 19 O -0.436 6.436 20 C -0.433 4.433 21 S 0.616 5.384 22 C -0.374 4.374 23 C -0.193 4.193 24 C -0.040 4.040 25 Cl -0.016 7.016 26 H 0.108 0.892 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.113 0.887 33 H 0.161 0.839 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.225 0.775 37 H 0.089 0.911 38 H 0.225 0.775 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -23.832 -29.473 7.947 38.726 hybrid contribution 2.695 -1.534 -1.446 3.422 sum -21.136 -31.007 6.501 38.084 Atomic orbital electron populations 1.22426 0.77163 1.05359 1.04362 1.47671 1.08372 1.04871 1.72857 1.21337 0.98098 0.84041 0.96337 1.22279 0.99222 0.88443 0.97634 1.60062 1.28315 1.29945 1.12656 1.21624 1.01055 0.92438 0.91827 1.20920 0.83429 0.88464 0.83556 1.90547 1.59526 1.68501 1.31179 1.42025 1.52256 1.21254 1.07649 1.19012 1.33275 0.98512 0.95051 0.92616 1.26134 0.96092 0.96207 1.03031 1.69808 1.39462 1.17928 1.30179 0.85352 0.79355 0.80126 0.76604 1.17825 1.20018 1.15736 1.17274 0.86586 0.83186 0.76615 1.90884 1.14377 1.87211 1.51113 1.24546 1.01751 0.96060 1.20976 1.83258 0.95902 0.96682 1.62549 1.26306 1.01645 1.05389 1.04107 1.19851 0.91576 1.00608 1.07225 1.20697 0.87375 0.93485 1.02394 1.98400 1.12286 1.96627 1.94309 0.89196 0.86405 0.89941 0.87081 0.91706 0.96229 0.88673 0.83885 0.91352 0.86116 0.77455 0.91106 0.77491 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 8.91 127.77 1.14 1.50 16 2 N -0.61 -10.47 2.87 -851.77 -2.45 -12.92 16 3 C 0.12 2.54 5.64 86.38 0.49 3.03 16 4 C 0.05 1.22 6.01 86.30 0.52 1.74 16 5 N -0.68 -20.52 6.13 -517.95 -3.17 -23.69 16 6 C 0.06 1.99 6.17 85.56 0.53 2.52 16 7 C 0.45 20.72 7.82 87.66 0.69 21.41 16 8 O -0.61 -34.67 15.78 -3.10 -0.05 -34.72 16 9 N -0.59 -28.38 5.09 -306.98 -1.56 -29.94 16 10 C -0.33 -19.59 10.16 84.04 0.85 -18.74 16 11 H 0.06 3.94 7.39 -2.91 -0.02 3.92 16 12 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 13 N -0.93 -56.82 13.96 21.66 0.30 -56.52 16 14 Si 0.97 39.25 27.74 68.60 1.90 41.15 16 15 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 16 H -0.28 -11.10 7.11 99.48 0.71 -10.40 16 17 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16 18 C 0.57 13.47 7.62 86.38 0.66 14.13 16 19 O -0.56 -17.96 14.73 -4.42 -0.07 -18.03 16 20 C -0.31 -5.59 6.22 24.07 0.15 -5.44 16 21 S 0.35 2.27 17.91 -56.49 -1.01 1.26 16 22 C -0.24 -1.47 10.92 66.81 0.73 -0.75 16 23 C -0.16 -1.96 10.06 21.10 0.21 -1.74 16 24 C 0.00 0.08 6.39 21.78 0.14 0.22 16 25 Cl -0.05 -1.08 27.30 -2.72 -0.07 -1.15 16 26 H 0.09 0.34 7.75 -2.39 -0.02 0.32 16 27 H 0.12 0.46 8.02 -2.39 -0.02 0.44 16 28 H 0.08 0.43 4.64 -20.47 -0.10 0.33 16 29 H 0.11 1.86 8.07 -2.39 -0.02 1.84 16 30 H 0.06 1.66 7.41 -2.39 -0.02 1.64 16 31 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.34 11.61 8.43 -89.69 -0.76 10.85 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 36 H 0.39 15.51 5.76 -92.71 -0.53 14.97 16 37 H 0.28 15.51 8.31 -92.70 -0.77 14.74 16 38 H 0.21 -0.16 8.06 -2.91 -0.02 -0.19 16 39 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -86.57 358.14 0.08 -86.49 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.31 Total: 30.61 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 6.57 Total: 17.45 kcal Atomic # 7 Polarization: -116.19 SS G_CDS: -6.88 Total: -123.07 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.11 Total: -52.74 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 1.90 Total: 41.15 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.01 Total: 1.26 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.07 Total: -1.15 kcal Total: -86.57 0.08 -86.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481232707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.128 kcal (2) G-P(sol) polarization free energy of solvation -86.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds