Wall clock time and date at job start Wed Apr 1 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00099 * 2 1 4 4 H 1.48498 * 109.47042 * 240.00341 * 3 2 1 5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47177 * 120.00342 * 3 2 1 7 7 C 1.38811 * 120.00464 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00525 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99545 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99876 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46983 * 179.97438 * 10 9 7 12 12 H 1.08994 * 110.05388 * 306.41391 * 11 10 9 13 13 C 1.54264 * 110.03370 * 67.83389 * 11 10 9 14 14 C 1.55031 * 104.28582 * 142.80180 * 13 11 10 15 15 C 1.54885 * 102.67780 * 322.23277 * 14 13 11 16 16 H 1.09007 * 110.48990 * 279.02503 * 15 14 13 17 17 N 1.46510 * 110.48504 * 156.51722 * 15 14 13 18 18 C 1.34771 * 119.99794 * 88.24014 * 17 15 14 19 19 O 1.21713 * 120.00237 * 359.97438 * 18 17 15 20 20 C 1.46546 * 119.99737 * 179.97438 * 18 17 15 21 21 C 1.37957 * 126.22343 * 179.97438 * 20 18 17 22 22 C 1.39795 * 107.12958 * 179.77018 * 21 20 18 23 23 Cl 1.73597 * 126.06355 * 180.30098 * 22 21 20 24 24 C 1.35717 * 107.87498 * 0.41672 * 22 21 20 25 25 Cl 1.73599 * 125.58836 * 179.84572 * 24 22 21 26 26 N 1.35671 * 108.82885 * 359.58092 * 24 22 21 27 27 H 0.97003 * 125.69485 * 180.26946 * 26 24 22 28 28 C 1.53885 * 110.03228 * 184.99632 * 11 10 9 29 29 H 0.97000 * 120.00015 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00287 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47385 * 59.99894 * 10 9 7 32 32 H 1.09002 * 109.46968 * 299.99810 * 10 9 7 33 33 H 1.09005 * 110.48690 * 261.57389 * 13 11 10 34 34 H 1.08999 * 110.48986 * 24.07678 * 13 11 10 35 35 H 1.09000 * 110.87437 * 203.89880 * 14 13 11 36 36 H 1.08997 * 110.69327 * 80.48394 * 14 13 11 37 37 H 0.96992 * 119.99714 * 268.24021 * 17 15 14 38 38 H 1.08006 * 126.43449 * 0.04608 * 21 20 18 39 39 H 1.08992 * 110.03080 * 121.42984 * 28 11 10 40 40 H 1.08999 * 110.02493 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3594 -4.7086 0.8243 13 6 0.3043 -4.8663 -1.3418 14 6 0.1423 -6.3796 -1.6372 15 6 1.4872 -6.9682 -1.1437 16 1 2.2634 -6.8300 -1.8966 17 7 1.3368 -8.3889 -0.8191 18 6 1.5129 -9.3211 -1.7763 19 8 1.7965 -8.9828 -2.9106 20 6 1.3630 -10.7423 -1.4515 21 6 1.5128 -11.7987 -2.3260 22 6 1.2870 -12.9708 -1.5984 23 17 1.3584 -14.5897 -2.2208 24 6 0.9996 -12.6184 -0.3197 25 17 0.6388 -13.7178 0.9744 26 7 1.0461 -11.2664 -0.2170 27 1 0.8836 -10.7541 0.5906 28 6 1.8161 -6.1562 0.1260 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0002 31 1 2.6848 -3.7145 0.8894 32 1 2.6847 -3.7145 -0.8906 33 1 -0.6710 -4.3893 -1.2449 34 1 0.8870 -4.3847 -2.1270 35 1 0.0124 -6.5550 -2.7052 36 1 -0.6919 -6.7952 -1.0721 37 1 1.1104 -8.6585 0.0847 38 1 1.7624 -11.7327 -3.3748 39 1 1.4766 -6.6937 1.0113 40 1 2.8893 -5.9762 0.1871 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486205334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:08 Heat of formation + Delta-G solvation = -4.904143 kcal Electronic energy + Delta-G solvation = -24285.680625 eV Core-core repulsion = 20380.542790 eV Total energy + Delta-G solvation = -3905.137835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.075 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04885 -39.86670 -38.08499 -37.37155 -36.92507 -35.00318 -33.60929 -31.74972 -31.15865 -29.84120 -28.86612 -27.60709 -24.58255 -23.41096 -22.21443 -21.54334 -20.96396 -20.63178 -19.83592 -19.27510 -17.03766 -16.90341 -16.53313 -15.99617 -15.34114 -15.06352 -14.91426 -14.63007 -14.30259 -14.22519 -13.84921 -13.73612 -13.37821 -13.27613 -12.81915 -12.43358 -12.36599 -12.27167 -11.98171 -11.81489 -11.51984 -11.37578 -11.12300 -10.86690 -10.77837 -10.70428 -10.47084 -10.38095 -10.21646 -9.96044 -9.68617 -9.58971 -9.35206 -8.86691 -8.79166 -6.91841 -5.76723 -3.05068 0.65818 0.87896 1.60088 1.68200 2.53928 2.81218 2.86571 3.43881 3.48239 3.49238 4.21061 4.31857 4.55706 4.60004 4.72230 4.83510 4.94379 5.08487 5.40845 5.47709 5.48641 5.54145 5.58378 5.64531 5.78218 5.81141 5.84916 5.99992 6.06624 6.21907 6.23463 6.29531 6.37995 6.49884 6.60116 6.77278 6.89861 7.08025 7.69339 7.75708 8.42520 9.53617 10.12053 10.46666 11.46132 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.032422 B = 0.001664 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.399661 B =16820.459070 C =17248.752376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.074 0.926 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.140 3.860 16 H 0.100 0.900 17 N -0.719 5.719 18 C 0.589 3.411 19 O -0.514 6.514 20 C -0.015 4.015 21 C -0.086 4.086 22 C -0.099 4.099 23 Cl -0.026 7.026 24 C 0.098 3.902 25 Cl 0.006 6.994 26 N -0.522 5.522 27 H 0.428 0.572 28 C -0.121 4.121 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.393 0.607 38 H 0.169 0.831 39 H 0.065 0.935 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -31.088 0.888 31.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.036 3.964 16 H 0.118 0.882 17 N -0.369 5.369 18 C 0.375 3.625 19 O -0.389 6.389 20 C -0.129 4.129 21 C -0.112 4.112 22 C -0.134 4.134 23 Cl 0.002 6.998 24 C -0.047 4.047 25 Cl 0.034 6.966 26 N -0.124 5.124 27 H 0.267 0.733 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.226 0.774 38 H 0.187 0.813 39 H 0.083 0.917 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.718 -30.796 0.240 30.806 hybrid contribution -0.129 0.748 1.137 1.367 sum 0.589 -30.049 1.377 30.086 Atomic orbital electron populations 1.69644 1.05098 1.25735 1.57798 1.24735 0.95528 0.97681 1.03079 0.86267 0.78520 0.83557 0.77839 1.21261 1.21695 1.21327 1.19191 0.90999 0.84250 1.42670 0.91296 1.42339 1.05858 0.99935 1.89457 1.20793 0.93021 0.85380 0.97677 1.21884 0.97717 0.93665 0.98217 0.90727 1.22348 1.01152 0.94045 0.97341 1.22925 0.96271 0.96650 1.01361 1.22070 0.98916 0.77179 0.98223 0.88218 1.46046 1.71540 1.07273 1.12053 1.16805 0.77583 0.82693 0.85439 1.90912 1.47486 1.80548 1.19960 1.20545 1.13861 0.94058 0.84394 1.21191 1.02135 0.87588 1.00328 1.19634 1.13850 0.88351 0.91516 1.98361 1.97316 1.17605 1.86498 1.20602 1.10727 0.82365 0.90958 1.98440 1.93135 1.57833 1.47178 1.41892 1.54363 1.04722 1.11407 0.73253 1.22411 1.01660 0.95950 0.95920 0.93494 0.78264 0.96591 0.96192 0.91111 0.90715 0.91153 0.91588 0.77377 0.81326 0.91683 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.19 5.45 -59.91 -0.33 -18.52 16 10 C 0.16 3.06 5.31 -4.04 -0.02 3.04 16 11 C -0.10 -1.40 2.96 -89.50 -0.27 -1.67 16 12 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.11 -1.61 6.08 -25.00 -0.15 -1.77 16 14 C -0.13 -1.58 6.59 -24.66 -0.16 -1.75 16 15 C 0.14 1.52 3.18 -66.27 -0.21 1.31 16 16 H 0.10 1.26 7.61 -51.92 -0.40 0.86 16 17 N -0.72 -6.10 5.16 -53.54 -0.28 -6.38 16 18 C 0.59 6.12 7.78 -12.91 -0.10 6.02 16 19 O -0.51 -7.33 16.56 5.18 0.09 -7.24 16 20 C -0.01 -0.12 7.06 -81.94 -0.58 -0.70 16 21 C -0.09 -0.76 10.64 -39.10 -0.42 -1.17 16 22 C -0.10 -0.81 6.66 -39.90 -0.27 -1.08 16 23 Cl -0.03 -0.21 29.12 -51.86 -1.51 -1.72 16 24 C 0.10 0.70 7.75 -16.76 -0.13 0.57 16 25 Cl 0.01 0.03 29.13 -51.86 -1.51 -1.48 16 26 N -0.52 -3.10 6.01 -6.51 -0.04 -3.14 16 27 H 0.43 1.28 8.19 -40.82 -0.33 0.94 16 28 C -0.12 -1.32 6.19 -25.61 -0.16 -1.48 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.38 9.99 7.55 -40.82 -0.31 9.68 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.22 7.76 -51.93 -0.40 0.81 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.39 2.11 7.47 -40.82 -0.30 1.80 16 38 H 0.17 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.06 0.57 7.72 -51.93 -0.40 0.17 16 40 H 0.08 0.84 7.67 -51.93 -0.40 0.45 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -32.54 367.94 -10.08 -42.62 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.04 Total: 6.35 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.71 Total: -6.02 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.08 Total: -55.41 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.09 Total: -7.24 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -3.02 Total: -3.19 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.54 -10.08 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486205334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.720 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds